Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t29774H Brassica oleracea HOM05D007686 ORTHO05D009709 3.9e-35 153.7 256 100.0
C05p10280 Brassica napus HOM05D002540 ORTHO05D002672 8.7e-35 152.5 256 99.6
A06p08670 Brassica napus HOM05D002540 ORTHO05D002672 2.5e-34 151.0 256 99.6
BraA06t24064Z Brassica rapa HOM05D007686 ORTHO05D009709 2.5e-34 151.0 256 99.6
BcaC05g25091 Brassica carinata HOM05D007686 ORTHO05D009709 7.4e-34 149.4 256 83.2
C08p15790 Brassica napus HOM05D002540 ORTHO05D002672 9.0e-32 142.5 256 97.7
BolC8t49205H Brassica oleracea HOM05D002540 ORTHO05D002672 9.0e-32 142.5 256 97.7
AT1G13040 Arabidopsis thaliana HOM05D007686 ORTHO05D009709 1.0e-30 139.0 256 96.1
Sp1g11590 Schrenkiella parvula HOM05D007686 ORTHO05D009709 2.9e-30 137.5 256 96.1
CARHR013370 Cardamine hirsuta HOM05D007686 ORTHO05D009709 3.8e-30 137.1 256 96.1
AL1G24690 Arabidopsis lyrata HOM05D007686 ORTHO05D009709 1.1e-29 135.6 255 96.1
Thhalv10007381m.g Eutrema salsugineum HOM05D007686 ORTHO05D009709 3.0e-27 127.5 256 94.9
THA.LOC104805275 Tarenaya hassleriana HOM05D007686 ORTHO05D009709 8.8e-27 125.9 256 93.8
A08p32500 Brassica napus HOM05D007686 ORTHO05D009709 1.1e-26 125.6 256 94.5
BraA08t35174Z Brassica rapa HOM05D007686 ORTHO05D009709 1.1e-26 125.6 256 94.5
Carub.0001s1279 Capsella rubella HOM05D007686 ORTHO05D009709 6.3e-25 119.8 256 93.0
Aa31LG1G1760 Aethionema arabicum HOM05D007686 ORTHO05D009709 1.8e-24 118.2 256 91.8
Manes.13G021400 Manihot esculenta HOM05D007686 ORTHO05D009709 1.5e-15 88.6 256 51.6
Manes.13G022000 Manihot esculenta HOM05D007686 ORTHO05D009709 1.5e-15 88.6 256 52.7
Gohir.D02G157000 Gossypium hirsutum HOM05D007686 ORTHO05D009709 1.9e-13 81.6 56 64.3
Cpa.g.sc33.48 Carica papaya HOM05D007686 ORTHO05D009709 1.6e-12 78.6 51 72.5
TWI18G1075 Tripterygium wilfordii HOM05D007686 ORTHO05D009709 3.6e-12 77.4 51 70.6
Thecc.02G263700 Theobroma cacao HOM05D007686 ORTHO05D009709 6.1e-12 76.6 55 61.8
Sabra08G0140000 Salix brachista HOM05D007686 ORTHO05D009709 8.0e-12 76.3 256 45.7
Eucgr.H02473 Eucalyptus grandis HOM05D007686 ORTHO05D009709 1.4e-11 75.5 256 71.9
MD16G1103300 Malus domestica HOM05D007686 ORTHO05D009709 1.4e-11 75.5 51 70.6
CANSAT01G2773 Cannabis sativa HOM05D007686 ORTHO05D009709 3.9e-11 73.9 51 70.6
MD13G1103100 Malus domestica HOM05D007686 ORTHO05D009709 3.9e-11 73.9 51 68.6
arahy.Tifrunner.gnm1.ann1.BXJH78 Arachis hypogaea HOM05D007686 ORTHO05D009709 6.7e-11 73.2 51 64.7
TWI36G0128 Tripterygium wilfordii HOM05D007686 ORTHO05D009709 6.7e-11 73.2 256 58.6
FAN12G1967 Fragaria x ananassa HOM05D007686 ORTHO05D009709 8.8e-11 72.8 50 70.0
QL03p056833 Quercus lobata HOM05D007686 ORTHO05D009709 8.8e-11 72.8 51 64.7
QL93p1848_0021 Quercus lobata HOM05D007686 ORTHO05D009709 8.8e-11 72.8 51 64.7
RcHm_v2.0_Chr4g0432731 Rosa chinensis HOM05D007686 ORTHO05D009709 2.0e-10 71.6 51 62.7
COL.COLO4_23488 Corchorus olitorius HOM05D007686 ORTHO05D009709 2.6e-10 71.2 54 55.6
PGR119G1810 Punica granatum HOM05D007686 ORTHO05D009709 2.6e-10 71.2 48 70.8
CiPaw.05G168000 Carya illinoinensis HOM05D007686 ORTHO05D009709 4.4e-10 70.5 51 60.8
Ciclev10031251m.g Citrus clementina HOM05D007686 ORTHO05D009709 5.7e-10 70.1 51 66.7
Rhsim12G0039200 Rhododendron simsii HOM05D007686 ORTHO05D009709 5.7e-10 70.1 49 67.3
CSS0050065 Camellia sinensis var. sinensis HOM05D007686 ORTHO05D009709 7.4e-10 69.7 51 62.7
Migut.K00622 Erythranthe guttata HOM05D007686 ORTHO05D009709 7.4e-10 69.7 51 64.7
SGA_v2.0_scaffold100G29576 Striga asiatica HOM05D007686 ORTHO05D009709 7.4e-10 69.7 51 60.8
Lalb_Chr07g0185471 Lupinus albus HOM05D007686 ORTHO05D009709 9.7e-10 69.3 51 64.7
Atru.chr11.2166 Acer truncatum HOM05D007686 ORTHO05D009709 1.3e-09 68.9 51 66.7
Prupe.1G242700 Prunus persica HOM05D007686 ORTHO05D009709 1.3e-09 68.9 51 62.7
Potri.008G185000 Populus trichocarpa HOM05D007686 ORTHO05D009709 1.7e-09 68.6 256 45.7
Hma1.2p1_0815F.1_g222720 Hydrangea macrophylla HOM05D007686 ORTHO05D009709 2.2e-09 68.2 51 60.8
TPR.G6255 Trifolium pratense HOM05D007686 ORTHO05D009709 2.2e-09 68.2 51 60.8
MSTRG.555 Avicennia marina HOM05D007686 ORTHO05D009709 2.8e-09 67.8 51 64.7
DCAR_031167 Daucus carota HOM05D002540 ORTHO05D002672 2.8e-09 67.8 51 62.7
Dinv14741 Davidia involucrata HOM05D007686 ORTHO05D009709 2.8e-09 67.8 51 62.7
Gorai.005G176400 Gossypium raimondii HOM05D007686 ORTHO05D009709 2.8e-09 67.8 45 64.4
Gohir.D04G180200 Gossypium hirsutum HOM05D007686 ORTHO05D009709 4.8e-09 67.0 256 43.8
Gorai.012G173300 Gossypium raimondii HOM05D007686 ORTHO05D009709 4.8e-09 67.0 256 74.6
HanXRQChr08g0208401 Helianthus annuus HOM05D007686 ORTHO05D009709 6.3e-09 66.6 256 71.5
ECA233G6157 Erigeron canadensis HOM05D007686 ORTHO05D009709 8.2e-09 66.2 47 66.0
Lj3P1060G37 Lonicera japonica HOM05D007686 ORTHO05D009709 8.2e-09 66.2 51 58.8
Medtr8g089700 Medicago truncatula HOM05D007686 ORTHO05D009709 8.2e-09 66.2 51 58.8
Psat7g058760 Pisum sativum HOM05D007686 ORTHO05D009709 1.1e-08 65.9 51 56.9
GSVIVG01000559001 Vitis vinifera HOM05D007686 ORTHO05D009709 1.4e-08 65.5 51 58.8
Gohir.A04G137000 Gossypium hirsutum HOM05D007686 ORTHO05D009709 1.8e-08 65.1 256 51.2
Phvul.002G258900 Phaseolus vulgaris HOM05D007686 ORTHO05D009709 1.8e-08 65.1 48 62.5
Glyma.05G173932 Glycine max HOM05D007686 ORTHO05D009709 2.4e-08 64.7 52 59.6
Glyma.08G131100 Glycine max HOM05D007686 ORTHO05D009709 2.4e-08 64.7 48 62.5
Solyc06g008190.1 Solanum lycopersicum HOM05D007686 ORTHO05D009709 7.0e-08 63.2 51 56.9
Sopen06g003050 Solanum pennellii HOM05D007686 ORTHO05D009709 7.0e-08 63.2 51 56.9
Lj4g0016926 Lotus japonicus HOM05D007686 ORTHO05D009709 9.1e-08 62.8 54 55.6
Ca_17785_v3 Cicer arietinum L. HOM05D007686 ORTHO05D009709 1.6e-07 62.0 51 52.9
Lsat_1_v5_gn_8_152860 Lactuca sativa HOM05D007686 ORTHO05D009709 3.5e-07 60.8 56 53.6
SHI17831 Sapria himalayana HOM05D007686 ORTHO05D009709 7.7e-07 59.7 50 54.0
Sc06g0009620 Simmondsia chinensis HOM05D007686 ORTHO05D009709 7.7e-07 59.7 48 58.3


User provided reference genes

Program Settings