Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t29685H Brassica oleracea HOM05D001791 ORTHO05D024528 1.7e-64 249.2 130 100.0
BolC1t02701H Brassica oleracea HOM05D001791 ORTHO05D024528 1.8e-61 239.2 130 96.2
A04p08380 Brassica napus HOM05D001791 ORTHO05D024528 4.2e-55 218.0 129 90.7
BraA01t03205Z Brassica rapa HOM05D001791 ORTHO05D001787 4.4e-36 154.8 85 95.3
BcaC03g16604 Brassica carinata HOM05D001791 ORTHO05D001787 2.9e-27 125.6 138 58.7
C01p20740 Brassica napus HOM05D001791 ORTHO05D001787 2.9e-27 125.6 69 92.8
C05p10820 Brassica napus HOM05D001791 ORTHO05D001787 1.3e-24 116.7 73 84.9
BolC5t29826H Brassica oleracea HOM05D001791 ORTHO05D001787 1.3e-24 116.7 73 84.9
BraA06t24112Z Brassica rapa HOM05D001791 ORTHO05D001787 1.7e-24 116.3 73 86.3
A06p09250 Brassica napus HOM05D001791 ORTHO05D001787 3.3e-23 112.1 74 83.8
BcaB07g31812 Brassica carinata HOM05D001791 ORTHO05D001787 4.3e-23 111.7 70 85.7
BcaB01g05490 Brassica carinata HOM05D001791 ORTHO05D001787 1.2e-22 110.2 75 77.3
AT1G12330 Arabidopsis thaliana HOM05D001791 ORTHO05D001787 4.7e-22 108.2 73 82.2
Carub.0001s1200 Capsella rubella HOM05D001791 ORTHO05D001787 4.7e-22 108.2 73 82.2
CARHR012630 Cardamine hirsuta HOM05D001791 ORTHO05D001787 4.7e-22 108.2 73 82.2
Sp1g10950 Schrenkiella parvula HOM05D001791 ORTHO05D001787 1.8e-21 106.3 73 80.8
Thhalv10007416m.g Eutrema salsugineum HOM05D001791 ORTHO05D001787 2.4e-21 105.9 73 80.8
AL1G23660 Arabidopsis lyrata HOM05D001791 ORTHO05D001787 4.0e-21 105.1 73 80.8
C08p15380 Brassica napus HOM05D001791 ORTHO05D001787 5.8e-20 101.3 72 75.0
Aa31LG1G2280 Aethionema arabicum HOM05D001793 ORTHO05D001938 1.7e-19 99.8 73 79.5
A02p28720 Brassica napus HOM05D001791 ORTHO05D001787 2.2e-19 99.4 57 86.0
BcaB03g13193 Brassica carinata HOM05D001791 ORTHO05D001787 4.9e-19 98.2 73 76.7
A08p32880 Brassica napus HOM05D001791 ORTHO05D001787 8.4e-19 97.4 85 68.2
BraA08t35210Z Brassica rapa HOM05D001791 ORTHO05D001787 8.4e-19 97.4 85 68.2
BcaB03g13194 Brassica carinata HOM05D001791 ORTHO05D001787 1.4e-18 96.7 80 67.5
THA.LOC104818392 Tarenaya hassleriana HOM05D001791 ORTHO05D001787 1.9e-18 96.3 133 55.6
BolC8t49166H Brassica oleracea HOM05D001791 ORTHO05D001787 2.4e-18 95.9 131 51.1
Gohir.A08G174000 Gossypium hirsutum HOM05D001791 ORTHO05D001787 1.1e-15 87.0 82 58.5
Gorai.004G202800 Gossypium raimondii HOM05D001791 ORTHO05D001787 1.1e-15 87.0 82 58.5
Duzib205G2035 Durio zibethinus HOM05D001791 ORTHO05D001787 1.9e-15 86.3 82 58.5
Sabra03G0080200 Salix brachista HOM05D001791 ORTHO05D001787 1.9e-15 86.3 82 59.8
C02p44320 Brassica napus HOM05D001791 ORTHO05D024528 2.5e-15 85.9 87 58.6
QL05p030002 Quercus lobata HOM05D001791 ORTHO05D001787 2.5e-15 85.9 80 57.5
QL12p015057 Quercus lobata HOM05D001791 ORTHO05D001787 2.5e-15 85.9 80 57.5
Manes.02G033200 Manihot esculenta HOM05D001791 ORTHO05D001787 4.3e-15 85.1 81 56.8
Lj4g0014037 Lotus japonicus HOM05D001791 ORTHO05D001787 9.6e-15 84.0 71 66.2
Thecc.03G262300 Theobroma cacao HOM05D001791 ORTHO05D001787 9.6e-15 84.0 82 57.3
Duzib068G0729 Durio zibethinus HOM05D001791 ORTHO05D001787 1.6e-14 83.2 82 56.1
Potri.003G115700 Populus trichocarpa HOM05D001791 ORTHO05D001787 1.6e-14 83.2 82 56.1
Sabra01G0089800 Salix brachista HOM05D001791 ORTHO05D001787 1.6e-14 83.2 82 57.3
Gohir.D08G192700 Gossypium hirsutum HOM05D001791 ORTHO05D001787 2.1e-14 82.8 82 56.1
MELO3C013989.2 Cucumis melo HOM05D001791 ORTHO05D001787 2.8e-14 82.4 74 63.5
CsaV3_3G003230 Cucumis sativus L. HOM05D001791 ORTHO05D001787 2.8e-14 82.4 74 63.5
Cpa.g.sc29.85 Carica papaya HOM05D001791 ORTHO05D001787 3.6e-14 82.0 75 58.7
ClCG10G003190 Citrullus lanatus HOM05D001791 ORTHO05D001787 3.6e-14 82.0 74 64.9
QL08p053426 Quercus lobata HOM05D001791 ORTHO05D001787 3.6e-14 82.0 81 54.3
Glyma.05G241700 Glycine max HOM05D001791 ORTHO05D001787 4.8e-14 81.6 75 56.0
COL.COLO4_23873 Corchorus olitorius HOM05D001791 ORTHO05D001787 8.1e-14 80.9 87 52.9
TAR375G0535 Trochodendron aralioides HOM05D001791 ORTHO05D001787 8.1e-14 80.9 80 55.0
Dinv39074 Davidia involucrata HOM05D001791 ORTHO05D001787 1.1e-13 80.5 73 60.3
HanXRQChr17g0550411 Helianthus annuus HOM05D001791 ORTHO05D001787 1.1e-13 80.5 72 58.3
Eucgr.D01987 Eucalyptus grandis HOM05D001791 ORTHO05D001787 1.4e-13 80.1 76 56.6
Manes.01G073000 Manihot esculenta HOM05D001791 ORTHO05D001787 1.4e-13 80.1 74 56.8
Haze_09048 Corylus avellana HOM05D001791 ORTHO05D001787 1.8e-13 79.7 69 62.3
TAR374G0056 Trochodendron aralioides HOM05D001791 ORTHO05D001787 1.8e-13 79.7 76 56.6
Ciclev10019946m.g Citrus clementina HOM05D001791 ORTHO05D001787 2.4e-13 79.3 82 56.1
Gorai.004G202300 Gossypium raimondii HOM05D001791 ORTHO05D001787 2.4e-13 79.3 82 54.9
Lsat_1_v5_gn_3_3741 Lactuca sativa HOM05D001791 ORTHO05D001787 2.4e-13 79.3 71 59.2
arahy.Tifrunner.gnm1.ann1.03CHBD Arachis hypogaea HOM05D001791 ORTHO05D001787 3.1e-13 79.0 70 60.0
arahy.Tifrunner.gnm1.ann1.240DSL Arachis hypogaea HOM05D001791 ORTHO05D001787 3.1e-13 79.0 70 60.0
Ca_17240_v3 Cicer arietinum L. HOM05D001791 ORTHO05D001787 3.1e-13 79.0 78 55.1
ECA246G0683 Erigeron canadensis HOM05D001791 ORTHO05D001787 3.1e-13 79.0 69 58.0
Glyma.08G049200 Glycine max HOM05D001791 ORTHO05D001787 3.1e-13 79.0 75 57.3
CiPaw.11G147200 Carya illinoinensis HOM05D001791 ORTHO05D001787 4.0e-13 78.6 81 54.3
Medtr8g106210 Medicago truncatula HOM05D001791 ORTHO05D001787 4.0e-13 78.6 75 60.0
Potri.001G117000 Populus trichocarpa HOM05D001791 ORTHO05D001787 4.0e-13 78.6 82 54.9
Cfa012020 Carpinus fangiana HOM05D001791 ORTHO05D001787 5.3e-13 78.2 69 60.9
Sopen08g027880 Solanum pennellii HOM05D001791 ORTHO05D001787 5.3e-13 78.2 79 58.2
Atru.chr9.1437 Acer truncatum HOM05D001791 ORTHO05D001787 6.9e-13 77.8 84 53.6
CSS0019690 Camellia sinensis var. sinensis HOM05D001791 ORTHO05D001787 6.9e-13 77.8 75 56.0
TPR.G12740 Trifolium pratense HOM05D001791 ORTHO05D001787 6.9e-13 77.8 77 55.8
MSTRG.25551 Avicennia marina HOM05D001791 ORTHO05D001787 1.2e-12 77.0 89 52.8
CAN.G630.78 Capsicum annuum HOM05D001791 ORTHO05D001787 1.2e-12 77.0 78 57.7
ClCG01G003620 Citrullus lanatus HOM05D001791 ORTHO05D001787 1.2e-12 77.0 77 57.1
Lj2P208T15 Lonicera japonica HOM05D001791 ORTHO05D001787 1.2e-12 77.0 94 50.0
Peaxi162Scf00271g00128 Petunia axillaris HOM05D001791 ORTHO05D001787 1.2e-12 77.0 82 56.1
Sc01g0009200 Simmondsia chinensis HOM05D001791 ORTHO05D001787 1.2e-12 77.0 98 46.9
Phvul.002G325000 Phaseolus vulgaris HOM05D001791 ORTHO05D001787 1.5e-12 76.6 77 55.8
TWI60G0377 Tripterygium wilfordii HOM05D001791 ORTHO05D001787 2.0e-12 76.3 69 58.0
Cc08_g13270 Coffea canephora HOM05D001791 ORTHO05D001787 2.6e-12 75.9 70 61.4
FAN04G2441 Fragaria x ananassa HOM05D001791 ORTHO05D001787 2.6e-12 75.9 81 53.1
FAN13G0899 Fragaria x ananassa HOM05D001791 ORTHO05D001787 2.6e-12 75.9 81 53.1
Solyc08g079510.3 Solanum lycopersicum HOM05D001791 ORTHO05D001787 2.6e-12 75.9 79 55.7
FvH4_5g00760 Fragaria vesca HOM05D001791 ORTHO05D001787 3.4e-12 75.5 81 53.1
FAN18G0073 Fragaria x ananassa HOM05D001791 ORTHO05D001787 3.4e-12 75.5 81 53.1
SalBow6G1467 Salvia bowleyana HOM05D001791 ORTHO05D001787 3.4e-12 75.5 87 50.6
PGSC0003DMG400003956 Solanum tuberosum HOM05D001791 ORTHO05D001787 3.4e-12 75.5 77 55.8
VMungo0606G0001 Vigna mungo HOM05D001791 ORTHO05D001787 3.4e-12 75.5 76 55.3
Lalb_Chr05g0222021 Lupinus albus HOM05D001791 ORTHO05D001787 4.4e-12 75.1 72 55.6
BolC3t13068H Brassica oleracea HOM05D001791 ORTHO05D024528 5.8e-12 74.7 87 56.3
MELO3C005583.2 Cucumis melo HOM05D001791 ORTHO05D001787 5.8e-12 74.7 77 55.8
CsaV3_5G003720 Cucumis sativus L. HOM05D001791 ORTHO05D001787 5.8e-12 74.7 77 55.8
MD04G1079100 Malus domestica HOM05D001791 ORTHO05D001787 5.8e-12 74.7 86 53.5
Lalb_Chr16g0387351 Lupinus albus HOM05D001791 ORTHO05D001787 9.9e-12 73.9 72 55.6
Nn4g26382 Nelumbo nucifera HOM05D001791 ORTHO05D001787 1.3e-11 73.6 83 51.8
Ah.02g116210 Amaranthus hybridus HOM05D001791 ORTHO05D001787 1.7e-11 73.2 86 54.7
RcHm_v2.0_Chr7g0201471 Rosa chinensis HOM05D001791 ORTHO05D001787 1.7e-11 73.2 82 47.6
TWI81G0909 Tripterygium wilfordii HOM05D001791 ORTHO05D001787 1.7e-11 73.2 76 52.6
EL10Ac5g12619 Beta vulgaris HOM05D001791 ORTHO05D001787 2.2e-11 72.8 70 54.3
vmacro14039 Vaccinium macrocarpon HOM05D001791 ORTHO05D001787 2.2e-11 72.8 80 50.0
Sed0023887 Sechium edule HOM05D001791 ORTHO05D001787 2.9e-11 72.4 78 55.1
DCAR_000857 Daucus carota HOM05D001791 ORTHO05D001787 3.8e-11 72.0 79 45.6
Nitab4.5_0003534g0030 Nicotiana tabacum HOM05D001791 ORTHO05D001787 3.8e-11 72.0 79 54.4
Nitab4.5_0010237g0050 Nicotiana tabacum HOM05D001791 ORTHO05D001787 3.8e-11 72.0 79 54.4
Psat7g003800 Pisum sativum HOM05D001791 ORTHO05D001787 3.8e-11 72.0 100 44.0
Hund11563 Selenicereus undatus HOM05D001791 ORTHO05D001787 3.8e-11 72.0 107 45.8
AUR62017387 Chenopodium quinoa HOM05D001791 ORTHO05D001787 4.9e-11 71.6 116 42.2
Duzib084G1358 Durio zibethinus HOM05D001791 ORTHO05D001787 4.9e-11 71.6 82 48.8
Migut.A00838 Erythranthe guttata HOM05D001791 ORTHO05D001787 4.9e-11 71.6 89 49.4
HanXRQChr06g0164641 Helianthus annuus HOM05D001791 ORTHO05D001787 4.9e-11 71.6 115 41.7
CANSAT21G0380 Cannabis sativa HOM05D001791 ORTHO05D001787 8.4e-11 70.9 85 49.4
Dinv37760 Davidia involucrata HOM05D001791 ORTHO05D001787 1.4e-10 70.1 69 58.0
Ah.12g058180 Amaranthus hybridus HOM05D001791 ORTHO05D001787 1.9e-10 69.7 111 43.2
Oeu016506.1 Olea europaea HOM05D001791 ORTHO05D001787 1.9e-10 69.7 85 49.4
AUR62010515 Chenopodium quinoa HOM05D001791 ORTHO05D001787 2.4e-10 69.3 114 41.2
DCAR_005649 Daucus carota HOM05D001791 ORTHO05D001787 2.4e-10 69.3 83 44.6
CiPaw.12G104500 Carya illinoinensis HOM05D001791 ORTHO05D001787 3.2e-10 68.9 81 49.4
PGR042G3389 Punica granatum HOM05D001791 ORTHO05D001787 3.2e-10 68.9 83 49.4
Rhsim07G0101100 Rhododendron simsii HOM05D001791 ORTHO05D001787 3.2e-10 68.9 79 48.1
unitig_22.g5482 Utricularia gibba HOM05D001791 ORTHO05D001787 4.2e-10 68.6 79 51.9
unitig_21.g20532 Utricularia gibba HOM05D001791 ORTHO05D001787 1.6e-09 66.6 72 50.0
Aqoxy7G00640 Aquilegia oxysepala HOM05D001791 ORTHO05D001787 2.1e-09 66.2 84 48.8
SGA_v2.0_scaffold120G32810 Striga asiatica HOM05D001791 ORTHO05D001787 2.1e-09 66.2 100 43.0
PSO782G2332 Papaver somniferum HOM05D001791 ORTHO05D001787 7.8e-09 64.3 91 45.1
unitig_8.g3901 Utricularia gibba HOM05D001791 ORTHO05D001787 1.7e-08 63.2 82 47.6
PSO478G5243 Papaver somniferum HOM05D001791 ORTHO05D001787 2.3e-08 62.8 88 45.5
Nn1g01251 Nelumbo nucifera HOM05D001791 ORTHO05D001787 5.1e-08 61.6 81 46.9
CSS0003253 Camellia sinensis var. sinensis HOM05D001791 ORTHO05D001787 6.6e-08 61.2 69 46.4
MBI12_g34012_MAGBIO Magnolia biondii HOM05D001791 ORTHO05D001787 8.7e-08 60.8 73 46.6
Prupe.5G080100 Prunus persica HOM05D001791 ORTHO05D001787 1.9e-07 59.7 77 48.1
Nn1g01115 Nelumbo nucifera HOM05D001791 ORTHO05D001787 5.6e-07 58.2 83 43.4
Hma1.2p1_0138F.1_g063140 Hydrangea macrophylla HOM05D001791 ORTHO05D001787 9.6e-07 57.4 81 43.2
unitig_744.g24321 Utricularia gibba HOM05D001791 ORTHO05D001787 9.6e-07 57.4 72 47.2
GSVIVG01004907001 Vitis vinifera HOM05D001791 ORTHO05D001787 4.8e-06 55.1 29 82.8
Sed0006466 Sechium edule HOM05D001791 ORTHO05D001787 6.2e-06 54.7 69 47.8


User provided reference genes

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