Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t29657H Brassica oleracea HOM05D009121 ORTHO05D001888 2.1e-86 322.4 169 100.0
C05p09130 Brassica napus HOM05D009121 ORTHO05D001888 4.6e-86 321.2 169 99.4
A06p07570 Brassica napus HOM05D009121 ORTHO05D001888 6.7e-85 317.4 169 98.8
BraA06t23959Z Brassica rapa HOM05D009121 ORTHO05D001888 6.7e-85 317.4 169 98.8
BcaC05g24955 Brassica carinata HOM05D009121 ORTHO05D001888 1.6e-78 296.2 169 91.1
C08p48520 Brassica napus HOM05D009121 ORTHO05D001888 5.0e-72 274.6 169 82.8
BolC8t52391H Brassica oleracea HOM05D009121 ORTHO05D001888 1.9e-71 272.7 169 82.2
A09p64670 Brassica napus HOM05D009121 ORTHO05D001888 4.2e-71 271.6 169 81.7
BcaB08g37374 Brassica carinata HOM05D009121 ORTHO05D001888 1.6e-70 269.6 169 81.1
Sp1g09470 Schrenkiella parvula HOM05D009121 ORTHO05D001888 2.1e-70 269.2 169 81.1
BraA09t41825Z Brassica rapa HOM05D009121 ORTHO05D001888 3.6e-70 268.5 169 81.1
AL1G21700 Arabidopsis lyrata HOM05D009121 ORTHO05D001888 3.7e-67 258.5 169 78.7
Thhalv10008932m.g Eutrema salsugineum HOM05D009121 ORTHO05D001888 6.3e-67 257.7 169 77.5
AT1G10770 Arabidopsis thaliana HOM05D009121 ORTHO05D001888 1.2e-65 253.4 169 76.9
Carub.0001s1032 Capsella rubella HOM05D009121 ORTHO05D001888 1.2e-65 253.4 167 78.4
BcaC07g38628 Brassica carinata HOM05D009121 ORTHO05D001888 1.0e-64 250.4 167 76.6
CARHR010990 Cardamine hirsuta HOM05D009121 ORTHO05D001888 7.2e-63 244.2 169 74.6
BcaC07g38589 Brassica carinata HOM05D009121 ORTHO05D001888 8.5e-56 220.7 167 69.5
THA.LOC104819351 Tarenaya hassleriana HOM05D009121 ORTHO05D001888 1.5e-52 209.9 171 65.5
Aa31LG2G9780 Aethionema arabicum HOM05D009121 ORTHO05D001888 1.7e-51 206.5 169 63.3
THA.LOC104809586 Tarenaya hassleriana HOM05D009121 ORTHO05D001888 3.7e-51 205.3 168 63.1
Carub.0002s0459 Capsella rubella HOM05D009121 ORTHO05D001888 2.9e-48 195.7 151 68.2
AL2G15820 Arabidopsis lyrata HOM05D009121 ORTHO05D001888 3.8e-48 195.3 169 61.5
AT1G60760 Arabidopsis thaliana HOM05D009121 ORTHO05D001888 3.2e-47 192.2 169 61.5
Sp2g04000 Schrenkiella parvula HOM05D009121 ORTHO05D001888 1.3e-43 180.3 168 57.1
Thhalv10024081m.g Eutrema salsugineum HOM05D009121 ORTHO05D001888 5.9e-41 171.4 154 59.7
Aa31LG1G4060 Aethionema arabicum HOM05D009121 ORTHO05D001888 2.9e-40 169.1 143 58.7
CARHR051730 Cardamine hirsuta HOM05D009121 ORTHO05D001888 3.8e-40 168.7 169 56.8
BcaNung05350 Brassica carinata HOM05D009121 ORTHO05D001888 1.8e-37 159.8 168 52.4
C09p21480 Brassica napus HOM05D009121 ORTHO05D001888 1.2e-36 157.1 148 55.4
BolC9t55053H Brassica oleracea HOM05D009121 ORTHO05D001888 1.2e-36 157.1 148 55.4
A09p17300 Brassica napus HOM05D009121 ORTHO05D001888 2.0e-36 156.4 168 51.2
BraA09t37359Z Brassica rapa HOM05D009121 ORTHO05D001888 2.0e-36 156.4 168 51.2
BolC8t49030H Brassica oleracea HOM05D009121 ORTHO05D001888 2.5e-31 139.4 95 73.7
C08p13970 Brassica napus HOM05D009121 ORTHO05D001888 3.6e-22 109.0 71 78.9
Ciclev10032926m.g Citrus clementina HOM05D008070 ORTHO05D001888 2.5e-15 86.3 165 30.3
Sed0022593 Sechium edule HOM05D008070 ORTHO05D001888 9.5e-15 84.3 132 33.3
MELO3C010682.2 Cucumis melo HOM05D008070 ORTHO05D001888 1.6e-14 83.6 155 33.5
Sp3g05640 Schrenkiella parvula HOM05D005742 ORTHO05D001888 4.0e-13 79.0 147 30.6
CsaV3_2G024840 Cucumis sativus L. HOM05D008070 ORTHO05D001888 6.8e-13 78.2 151 33.1
TAR629G1731 Trochodendron aralioides HOM05D008070 ORTHO05D001888 6.8e-13 78.2 172 31.4
Carub.0001s2294 Capsella rubella HOM05D008070 ORTHO05D001888 2.0e-12 76.6 151 31.8
Haze_12224 Corylus avellana HOM05D008070 ORTHO05D001888 2.0e-12 76.6 133 33.8
THA.LOC104822159 Tarenaya hassleriana HOM05D008070 ORTHO05D001888 2.0e-12 76.6 155 34.2
Thhalv10022426m.g Eutrema salsugineum HOM05D005742 ORTHO05D001888 2.6e-12 76.3 147 29.3
ClCG08G017790 Citrullus lanatus HOM05D008070 ORTHO05D001888 4.4e-12 75.5 158 32.9
BcaB07g32331 Brassica carinata HOM05D008070 ORTHO05D001888 5.8e-12 75.1 150 32.7
AL1G37150 Arabidopsis lyrata HOM05D008070 ORTHO05D001888 7.5e-12 74.7 152 28.9
BcaC05g26248 Brassica carinata HOM05D008070 ORTHO05D001888 9.9e-12 74.3 150 32.7
C05p22620 Brassica napus HOM05D008070 ORTHO05D001888 9.9e-12 74.3 150 32.7
BolC5t30961H Brassica oleracea HOM05D008070 ORTHO05D001888 9.9e-12 74.3 150 32.7
Manes.12G025200 Manihot esculenta HOM05D008070 ORTHO05D001888 9.9e-12 74.3 161 31.7
THA.LOC104802706 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 9.9e-12 74.3 149 32.2
AL3G17770 Arabidopsis lyrata HOM05D005742 ORTHO05D001888 1.3e-11 73.9 133 30.8
AT1G23350 Arabidopsis thaliana HOM05D008070 ORTHO05D001888 1.3e-11 73.9 149 30.2
Cfa009190 Carpinus fangiana HOM05D008070 ORTHO05D001888 1.7e-11 73.6 152 31.6
BcaB03g14151 Brassica carinata HOM05D008070 ORTHO05D001888 2.2e-11 73.2 159 30.8
AT3G36659 Arabidopsis thaliana HOM05D005742 ORTHO05D001888 2.9e-11 72.8 133 30.1
BcaC09g47911 Brassica carinata HOM05D005742 ORTHO05D001888 6.4e-11 71.6 146 28.8
BolC1t05594H Brassica oleracea HOM05D005742 ORTHO05D001888 6.4e-11 71.6 146 28.8
CANSAT01G1404 Cannabis sativa HOM05D008070 ORTHO05D001888 8.3e-11 71.2 133 30.1
CARHR023800 Cardamine hirsuta HOM05D008070 ORTHO05D001888 1.1e-10 70.9 146 30.8
BcaC06g35034 Brassica carinata HOM05D008070 ORTHO05D001888 1.4e-10 70.5 151 31.1
Carub.0003s0617 Capsella rubella HOM05D005742 ORTHO05D001888 1.4e-10 70.5 134 29.9
BNapus_Darmor_BZH_scaffold_118p00010 Brassica napus HOM05D005742 ORTHO05D001888 1.9e-10 70.1 146 28.1
BraA01t04423Z Brassica rapa HOM05D005742 ORTHO05D001888 1.9e-10 70.1 146 28.1
CARHR081260 Cardamine hirsuta HOM05D005742 ORTHO05D001888 1.9e-10 70.1 143 27.3
Atru.chr11.2085 Acer truncatum HOM05D008070 ORTHO05D001888 2.4e-10 69.7 162 28.4
Atru.chr11.2086 Acer truncatum HOM05D008070 ORTHO05D001888 2.4e-10 69.7 162 28.4
Aa31LG5G17240 Aethionema arabicum HOM05D005742 ORTHO05D001888 2.4e-10 69.7 134 26.1
BcaC05g30549 Brassica carinata HOM05D005742 ORTHO05D001888 2.4e-10 69.7 136 29.4
CiPaw.05G184900 Carya illinoinensis HOM05D008070 ORTHO05D001888 2.4e-10 69.7 131 29.0
BolC7t42570H Brassica oleracea HOM05D008070 ORTHO05D001888 3.2e-10 69.3 151 30.5
QL03p058730 Quercus lobata HOM05D008070 ORTHO05D001888 3.2e-10 69.3 148 29.7
BraA07t29145Z Brassica rapa HOM05D008070 ORTHO05D001888 7.1e-10 68.2 131 31.3
MELO3C011974.2 Cucumis melo HOM05D008070 ORTHO05D001888 7.1e-10 68.2 152 26.3
TAR362G0759 Trochodendron aralioides HOM05D005742 ORTHO05D001888 7.1e-10 68.2 161 31.7
THA.LOC104822979 Tarenaya hassleriana HOM05D008070 ORTHO05D001888 9.2e-10 67.8 155 31.0
BcaB03g11935 Brassica carinata HOM05D008070 ORTHO05D001888 1.2e-09 67.4 160 31.2
Sp1g20800 Schrenkiella parvula HOM05D008070 ORTHO05D001888 1.6e-09 67.0 157 28.0
Thhalv10008931m.g Eutrema salsugineum HOM05D008070 ORTHO05D001888 2.1e-09 66.6 152 29.6
CsaV3_5G031330 Cucumis sativus L. HOM05D008070 ORTHO05D001888 7.8e-09 64.7 152 27.0
TAR622G1131 Trochodendron aralioides HOM05D008070 ORTHO05D001888 7.8e-09 64.7 147 28.6
CiPaw.06G069400 Carya illinoinensis HOM05D008070 ORTHO05D001888 1.0e-08 64.3 162 32.1
Hma1.2p1_0013F.1_g008650 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 1.0e-08 64.3 153 29.4
Nn3g21713 Nelumbo nucifera HOM05D005742 ORTHO05D001888 1.0e-08 64.3 145 27.6
Aa31LG7G7380 Aethionema arabicum HOM05D008070 ORTHO05D001888 1.7e-08 63.5 154 30.5
A08p28210 Brassica napus HOM05D008070 ORTHO05D001888 2.3e-08 63.2 132 32.6
BraA08t34752Z Brassica rapa HOM05D008070 ORTHO05D001888 2.3e-08 63.2 132 32.6
BcaC07g39196 Brassica carinata HOM05D008070 ORTHO05D001888 3.0e-08 62.8 155 30.3
BolC8t49825H Brassica oleracea HOM05D008070 ORTHO05D001888 3.0e-08 62.8 155 30.3
QL04p082607 Quercus lobata HOM05D010056 ORTHO05D001888 3.0e-08 62.8 149 28.9
Sed0009222 Sechium edule HOM05D005742 ORTHO05D001888 3.9e-08 62.4 153 28.8
Haze_01291 Corylus avellana HOM05D005742 ORTHO05D001888 5.1e-08 62.0 138 29.7
C08p21860 Brassica napus HOM05D008070 ORTHO05D001888 6.6e-08 61.6 155 30.3
Cfa015324 Carpinus fangiana HOM05D005742 ORTHO05D001888 8.6e-08 61.2 139 29.5
THA.LOC104818886 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 1.1e-07 60.8 134 29.9
Duzib052G0264 Durio zibethinus HOM05D005742 ORTHO05D001888 1.5e-07 60.5 151 28.5
Cpa.g.sc9.68 Carica papaya HOM05D005742 ORTHO05D001888 1.9e-07 60.1 145 29.7
Ciclev10007183m.g Citrus clementina HOM05D005742 ORTHO05D001888 1.9e-07 60.1 144 31.2
TAR633G1530 Trochodendron aralioides HOM05D005742 ORTHO05D001888 1.9e-07 60.1 144 31.9
Nn4g25584 Nelumbo nucifera HOM05D005742 ORTHO05D001888 2.5e-07 59.7 146 30.8
Rhsim04G0235100 Rhododendron simsii HOM05D005742 ORTHO05D001888 2.5e-07 59.7 141 27.7
DCAR_027000 Daucus carota HOM05D005742 ORTHO05D001888 4.3e-07 58.9 140 28.6
vmacro08056 Vaccinium macrocarpon HOM05D001258 ORTHO05D000158 5.6e-07 58.5 153 27.5
BraA09t39622Z Brassica rapa HOM05D008070 ORTHO05D001888 7.3e-07 58.2 113 32.7
A09p41290 Brassica napus HOM05D008070 ORTHO05D001888 1.2e-06 57.4 113 32.7
Duzib151G0239 Durio zibethinus HOM05D005742 ORTHO05D001888 1.2e-06 57.4 153 26.1
Dinv44293 Davidia involucrata HOM05D005742 ORTHO05D001888 2.1e-06 56.6 143 28.7
Prupe.1G249100 Prunus persica HOM05D008070 ORTHO05D001888 2.1e-06 56.6 147 25.9
Cpa.g.sc69.89 Carica papaya HOM05D008070 ORTHO05D001888 2.8e-06 56.2 166 28.3
Gohir.D02G058775 Gossypium hirsutum HOM05D005742 ORTHO05D001888 3.6e-06 55.8 149 28.2
Oeu032017.1 Olea europaea HOM05D005742 ORTHO05D001888 4.7e-06 55.5 146 24.7
Atru.chr4.3013 Acer truncatum HOM05D005742 ORTHO05D001888 6.2e-06 55.1 121 28.1
Ah.04g157100 Amaranthus hybridus HOM05D005742 ORTHO05D001888 8.1e-06 54.7 136 27.2
QL06p011856 Quercus lobata HOM05D005742 ORTHO05D001888 8.1e-06 54.7 144 30.6
Thecc.04G299300 Theobroma cacao HOM05D005742 ORTHO05D001888 8.1e-06 54.7 146 27.4


User provided reference genes

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