Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t29617H Brassica oleracea HOM05D004181 ORTHO05D039772 3.4e-71 271.6 135 100.0
BcaC05g24878 Brassica carinata HOM05D004181 ORTHO05D039772 4.0e-56 221.5 139 84.9
C05p08690 Brassica napus HOM05D004181 ORTHO05D005610 1.7e-46 189.5 104 95.2
A10p20860 Brassica napus HOM05D004181 ORTHO05D005610 1.6e-41 172.9 160 61.9
BraA10t44151Z Brassica rapa HOM05D004181 ORTHO05D005610 1.6e-41 172.9 160 61.9
CARHR194300 Cardamine hirsuta HOM05D004181 ORTHO05D005610 4.7e-41 171.4 160 62.5
BolC3t13535H Brassica oleracea HOM05D004181 ORTHO05D005610 2.3e-40 169.1 160 65.0
AL6G29980 Arabidopsis lyrata HOM05D004181 ORTHO05D005610 7.6e-39 164.1 160 60.0
Aa31LG11G10920 Aethionema arabicum HOM05D004181 ORTHO05D005610 3.8e-38 161.8 162 59.9
C03p10540 Brassica napus HOM05D004181 ORTHO05D005610 6.4e-38 161.0 160 63.1
BcaB08g36651 Brassica carinata HOM05D004181 ORTHO05D005610 2.1e-36 156.0 160 57.5
A03p09050 Brassica napus HOM05D004181 ORTHO05D005610 2.1e-36 156.0 160 60.0
BraA03t10229Z Brassica rapa HOM05D004181 ORTHO05D005610 2.1e-36 156.0 160 60.0
AT5G18700 Arabidopsis thaliana HOM05D004181 ORTHO05D005610 6.0e-36 154.5 159 57.9
BcaC04g18651 Brassica carinata HOM05D004181 ORTHO05D005610 5.1e-35 151.4 160 56.2
C09p57750 Brassica napus HOM05D004181 ORTHO05D005610 5.1e-35 151.4 160 56.2
BolC9t58645H Brassica oleracea HOM05D004181 ORTHO05D005610 5.1e-35 151.4 160 56.2
Sp6g25640 Schrenkiella parvula HOM05D004181 ORTHO05D005610 2.1e-33 146.0 160 57.5
Carub.0006s1700 Capsella rubella HOM05D004181 ORTHO05D005610 7.6e-31 137.5 150 55.3
Thhalv10012450m.g Eutrema salsugineum HOM05D004181 ORTHO05D005610 1.3e-25 120.2 160 50.6
THA.LOC104820110 Tarenaya hassleriana HOM05D004181 ORTHO05D005610 4.5e-23 111.7 158 46.8
AT1G33940 Arabidopsis thaliana HOM05D004181 ORTHO05D005610 5.8e-15 84.7 61 75.4
CiPaw.01G154000 Carya illinoinensis HOM05D004181 ORTHO05D005610 9.9e-15 84.0 133 42.1
Duzib151G0672 Durio zibethinus HOM05D004181 ORTHO05D005610 2.2e-14 82.8 161 37.3
Gorai.005G057000 Gossypium raimondii HOM05D004181 ORTHO05D005610 3.8e-14 82.0 154 37.7
COL.COLO4_13939 Corchorus olitorius HOM05D004181 ORTHO05D005610 4.9e-14 81.6 152 37.5
Gohir.A02G045700 Gossypium hirsutum HOM05D004181 ORTHO05D005610 4.9e-14 81.6 154 37.7
Thecc.04G276100 Theobroma cacao HOM05D004181 ORTHO05D005610 8.4e-14 80.9 154 36.4
Gohir.D02G051700 Gossypium hirsutum HOM05D004181 ORTHO05D005610 1.1e-13 80.5 154 37.7
Gohir.A10G101825 Gossypium hirsutum HOM05D004181 ORTHO05D005610 1.9e-13 79.7 155 37.4
Cfa015503 Carpinus fangiana HOM05D004181 ORTHO05D005610 7.9e-12 74.3 158 34.8
Gohir.D10G165800 Gossypium hirsutum HOM05D004181 ORTHO05D005610 7.9e-12 74.3 155 36.1
Gorai.011G185300 Gossypium raimondii HOM05D004181 ORTHO05D005610 7.9e-12 74.3 155 36.1
Haze_01049 Corylus avellana HOM05D004181 ORTHO05D005610 2.3e-11 72.8 158 34.2
QL12p038326 Quercus lobata HOM05D004181 ORTHO05D005610 3.0e-11 72.4 153 34.6
Cpa.g.sc16.105 Carica papaya HOM05D004181 ORTHO05D005610 1.9e-10 69.7 154 35.7
Lj6C668T4 Lonicera japonica HOM05D004181 ORTHO05D005610 2.5e-10 69.3 130 36.9
LjContig00389g0007799 Lotus japonicus HOM05D004181 ORTHO05D005610 1.6e-09 66.6 158 34.8
Rhsim04G0215600 Rhododendron simsii HOM05D004181 ORTHO05D005610 4.8e-09 65.1 160 33.1
QL06p007241 Quercus lobata HOM05D004181 ORTHO05D005610 6.2e-09 64.7 152 32.2
Prupe.1G143100 Prunus persica HOM05D004181 ORTHO05D005610 8.2e-09 64.3 158 33.5
Potri.008G195800 Populus trichocarpa HOM05D004181 ORTHO05D005610 1.1e-08 63.9 130 36.9
Potri.010G031800 Populus trichocarpa HOM05D004181 ORTHO05D005610 1.1e-08 63.9 161 35.4
Phvul.006G160500 Phaseolus vulgaris HOM05D004181 ORTHO05D005610 1.8e-08 63.2 130 36.9
Lalb_Chr18g0055771 Lupinus albus HOM05D004181 ORTHO05D005610 5.3e-08 61.6 159 34.6
Peaxi162Scf00075g01553 Petunia axillaris HOM05D004181 ORTHO05D005610 9.0e-08 60.8 160 33.8
Sabra08G0148900 Salix brachista HOM05D004181 ORTHO05D005610 9.0e-08 60.8 130 36.2
Solyc08g013940.3 Solanum lycopersicum HOM05D004181 ORTHO05D005610 1.2e-07 60.5 108 39.8
CSS0009092 Camellia sinensis var. sinensis HOM05D004181 ORTHO05D005610 1.5e-07 60.1 146 35.6
vmacro08213 Vaccinium macrocarpon HOM05D004181 ORTHO05D005610 1.5e-07 60.1 168 33.3
Glyma.15G098800 Glycine max HOM05D004181 ORTHO05D005610 2.6e-07 59.3 129 34.9
Sopen08g004800 Solanum pennellii HOM05D004181 ORTHO05D005610 2.6e-07 59.3 108 38.9
Nn3g21283 Nelumbo nucifera HOM05D004181 ORTHO05D005610 3.4e-07 58.9 132 36.4
AUR62040385 Chenopodium quinoa HOM05D004181 ORTHO05D005610 4.5e-07 58.5 151 37.1
arahy.Tifrunner.gnm1.ann1.6ZP27B Arachis hypogaea HOM05D004181 ORTHO05D005610 5.8e-07 58.2 138 35.5
CSS0036329 Camellia sinensis var. sinensis HOM05D004181 ORTHO05D005610 5.8e-07 58.2 138 35.5
AUR62040726 Chenopodium quinoa HOM05D004181 ORTHO05D005610 5.8e-07 58.2 168 33.9
Ca_00581_v3 Cicer arietinum L. HOM05D004181 ORTHO05D005610 5.8e-07 58.2 160 31.2
FvH4_4g17050 Fragaria vesca HOM05D004181 ORTHO05D005610 5.8e-07 58.2 153 30.7
FAN12G1830 Fragaria x ananassa HOM05D004181 ORTHO05D005610 7.6e-07 57.8 153 30.7
TAR633G0339 Trochodendron aralioides HOM05D004181 ORTHO05D005610 1.0e-06 57.4 147 34.7
Manes.15G017750 Manihot esculenta HOM05D004181 ORTHO05D005610 1.3e-06 57.0 161 32.9
FAN17G2769 Fragaria x ananassa HOM05D004181 ORTHO05D005610 2.9e-06 55.8 153 30.1
Ciclev10004155m.g Citrus clementina HOM05D004181 ORTHO05D005610 3.8e-06 55.5 139 34.5
Glyma.13G214400 Glycine max HOM05D004181 ORTHO05D005610 3.8e-06 55.5 160 30.6
FAN07G0512 Fragaria x ananassa HOM05D004181 ORTHO05D005610 6.5e-06 54.7 153 29.4
RcHm_v2.0_Chr4g0420851 Rosa chinensis HOM05D004181 ORTHO05D005610 6.5e-06 54.7 161 31.1
Sc13g0003670 Simmondsia chinensis HOM05D004181 ORTHO05D005610 6.5e-06 54.7 161 34.8
EL10Ac3g06539 Beta vulgaris HOM05D004181 ORTHO05D005610 8.4e-06 54.3 109 39.4
FAN12G4244 Fragaria x ananassa HOM05D004181 ORTHO05D005610 8.4e-06 54.3 153 30.1


User provided reference genes

Program Settings