Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 5.4e-66 254.2 131 100.0
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 6.4e-43 177.6 131 77.1
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 4.2e-42 174.9 136 74.3
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 2.5e-39 165.6 127 76.4
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 1.6e-33 146.4 128 68.0
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 6.0e-33 144.4 134 64.9
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 6.0e-33 144.4 128 67.2
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 6.6e-32 141.0 128 66.4
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 8.7e-32 140.6 128 65.6
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 5.6e-31 137.9 128 64.1
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 9.6e-31 137.1 125 66.4
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 2.8e-30 135.6 128 63.3
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 3.6e-30 135.2 128 63.3
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 3.6e-30 135.2 128 63.3
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 2.4e-29 132.5 130 61.5
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 4.0e-29 131.7 126 62.7
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 9.0e-29 130.6 130 60.8
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 3.4e-28 128.6 79 87.3
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 4.5e-28 128.3 91 78.0
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 9.9e-28 127.1 128 61.7
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 1.4e-26 123.2 125 60.8
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 2.1e-25 119.4 128 57.0
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 3.5e-25 118.6 126 60.3
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 4.6e-25 118.2 79 81.0
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 6.7e-24 114.4 79 78.5
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 9.6e-23 110.5 75 78.7
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 1.3e-22 110.2 123 56.9
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.3e-22 110.2 123 53.7
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 1.6e-22 109.8 75 72.0
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 6.2e-22 107.8 121 53.7
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 6.2e-22 107.8 121 53.7
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 8.1e-22 107.5 116 53.4
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 1.1e-21 107.1 96 61.5
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 9.0e-21 104.0 75 73.3
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 9.0e-21 104.0 75 69.3
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 1.7e-19 99.8 78 70.5
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 6.5e-19 97.8 77 70.1
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 1.1e-18 97.1 73 67.1
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 1.4e-18 96.7 74 68.9
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 7.1e-18 94.4 76 63.2
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 7.1e-18 94.4 126 44.4
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 9.3e-18 94.0 105 51.4
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 1.2e-17 93.6 73 69.9
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 1.6e-17 93.2 80 63.8
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 1.6e-17 93.2 57 80.7
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 1.6e-17 93.2 73 68.5
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 2.1e-17 92.8 75 61.3
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 2.1e-17 92.8 76 64.5
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 3.5e-17 92.0 75 64.0
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 3.5e-17 92.0 73 69.9
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 4.6e-17 91.7 79 64.6
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 4.6e-17 91.7 68 67.6
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 6.0e-17 91.3 73 67.1
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 7.9e-17 90.9 125 47.2
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 7.9e-17 90.9 101 50.5
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 1.0e-16 90.5 74 68.9
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 1.0e-16 90.5 76 60.5
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 1.0e-16 90.5 75 62.7
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 1.0e-16 90.5 75 62.7
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 1.3e-16 90.1 99 50.5
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 1.8e-16 89.7 57 78.9
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 1.8e-16 89.7 73 61.6
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 1.8e-16 89.7 77 62.3
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 2.3e-16 89.4 76 64.5
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 2.3e-16 89.4 71 67.6
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 2.3e-16 89.4 76 61.8
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 2.3e-16 89.4 75 60.0
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 3.0e-16 89.0 72 66.7
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 3.0e-16 89.0 73 63.0
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 3.0e-16 89.0 125 44.0
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 3.0e-16 89.0 71 63.4
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 3.9e-16 88.6 73 61.6
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 3.9e-16 88.6 96 54.2
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 3.9e-16 88.6 75 58.7
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 5.1e-16 88.2 75 64.0
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 6.7e-16 87.8 76 60.5
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 6.7e-16 87.8 71 64.8
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 8.7e-16 87.4 73 63.0
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 8.7e-16 87.4 75 57.3
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 1.1e-15 87.0 48 89.6
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 1.1e-15 87.0 68 63.2
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.5e-15 86.7 65 64.6
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 1.5e-15 86.7 77 59.7
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 1.9e-15 86.3 87 52.9
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 1.9e-15 86.3 73 61.6
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 1.9e-15 86.3 126 46.8
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 1.9e-15 86.3 74 60.8
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 2.5e-15 85.9 82 57.3
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 3.3e-15 85.5 76 63.2
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 3.3e-15 85.5 96 51.0
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 3.3e-15 85.5 71 63.4
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 3.3e-15 85.5 72 62.5
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 4.3e-15 85.1 75 60.0
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 4.3e-15 85.1 75 54.7
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 7.4e-15 84.3 76 61.8
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 9.6e-15 84.0 87 57.5
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 9.6e-15 84.0 73 60.3
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 9.6e-15 84.0 74 59.5
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 1.3e-14 83.6 75 58.7
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 1.6e-14 83.2 80 56.2
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 2.1e-14 82.8 87 51.7
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 2.1e-14 82.8 73 60.3
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 2.8e-14 82.4 63 61.9
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 2.8e-14 82.4 63 61.9
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 2.8e-14 82.4 79 59.5
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 3.7e-14 82.0 73 60.3
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 3.7e-14 82.0 91 51.6
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 3.7e-14 82.0 75 57.3
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 4.8e-14 81.6 60 66.7
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 4.8e-14 81.6 90 46.7
Haze_10030 Corylus avellana HOM05D004289 ORTHO05D005141 6.3e-14 81.3 72 61.1
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 6.3e-14 81.3 84 53.6
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 6.3e-14 81.3 72 58.3
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 6.3e-14 81.3 76 56.6
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 6.3e-14 81.3 91 53.8
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 8.2e-14 80.9 77 57.1
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 8.2e-14 80.9 72 58.3
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 8.2e-14 80.9 72 56.9
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 1.4e-13 80.1 44 93.2
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 1.8e-13 79.7 72 55.6
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 2.4e-13 79.3 67 64.2
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 2.4e-13 79.3 76 59.2
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 3.1e-13 79.0 98 43.9
Os05g0419600 Oryza sativa ssp. japonica HOM05D004289 ORTHO05D005141 5.3e-13 78.2 76 53.9
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 9.0e-13 77.4 59 64.4
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 1.2e-12 77.0 65 61.5
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 1.2e-12 77.0 90 47.8
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 1.2e-12 77.0 90 47.8
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 3.4e-12 75.5 86 51.2
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 3.4e-12 75.5 64 57.8
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 4.5e-12 75.1 72 58.3
Zm00001eb349170 Zea mays HOM05D004289 ORTHO05D005141 5.9e-12 74.7 78 53.8
TPR.G2097 Trifolium pratense HOM05D004289 ORTHO05D005141 5.0e-11 71.6 53 66.0
CiPaw.05G003600 Carya illinoinensis HOM05D004289 ORTHO05D005141 8.4e-11 70.9 72 58.3
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 8.4e-11 70.9 79 46.8
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 8.4e-11 70.9 75 50.7
Gohir.A04G133900 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.4e-10 70.1 41 80.5
Gohir.D04G177000 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.4e-10 70.1 41 80.5
Gorai.012G169900 Gossypium raimondii HOM05D004289 ORTHO05D005141 1.4e-10 70.1 41 80.5
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 1.4e-10 70.1 75 54.7
FAN04G1595 Fragaria x ananassa HOM05D004289 ORTHO05D005141 3.2e-10 68.9 62 59.7
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 7.2e-10 67.8 76 52.6
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 7.2e-10 67.8 63 47.6
FAN18G1872 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.6e-09 66.6 64 51.6
Sed0020386 Sechium edule HOM05D004289 ORTHO05D005141 4.6e-09 65.1 73 54.8
SalBow7G1625 Salvia bowleyana HOM05D004289 ORTHO05D005141 6.1e-09 64.7 72 54.2
Glyma.16G002000 Glycine max HOM05D004289 ORTHO05D005141 8.7e-08 60.8 75 52.0
Glyma.12G165600 Glycine max HOM05D004289 ORTHO05D005141 1.1e-07 60.5 119 38.7
arahy.Tifrunner.gnm1.ann1.2Z03QX Arachis hypogaea HOM05D004289 ORTHO05D005141 1.3e-06 57.0 30 93.3
Lalb_Chr15g0090801 Lupinus albus HOM05D004289 ORTHO05D005141 1.6e-06 56.6 75 46.7
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 8.2e-06 54.3 72 44.4


User provided reference genes

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