Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 5.0e-157 557.8 288 100.0
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 1.9e-156 555.8 287 100.0
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 3.6e-155 551.6 288 98.3
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 8.3e-152 540.4 288 96.2
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 5.7e-145 517.7 271 97.0
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 1.2e-142 510.0 287 91.3
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 3.3e-140 501.9 290 91.4
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 5.6e-140 501.1 287 90.2
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 1.8e-138 496.1 288 88.9
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 4.3e-132 474.9 288 84.7
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 1.4e-130 469.9 288 84.0
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 8.9e-130 467.2 288 85.1
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 1.4e-127 459.9 288 84.0
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 2.4e-119 432.6 288 76.7
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 3.2e-119 432.2 266 82.0
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 3.3e-100 369.0 290 67.2
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 5.6e-100 368.2 288 63.9
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 2.8e-99 365.9 290 66.9
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 3.6e-99 365.5 289 66.1
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 6.2e-99 364.8 289 66.1
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 6.2e-99 364.8 290 66.6
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 1.1e-98 364.0 289 66.1
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 1.1e-98 364.0 288 66.3
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 1.5e-97 360.1 290 64.5
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 7.6e-97 357.8 289 65.7
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 9.9e-97 357.5 290 64.1
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 1.3e-96 357.1 287 62.4
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 2.2e-96 356.3 290 63.8
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 3.8e-96 355.5 290 64.1
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 3.8e-96 355.5 287 63.1
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 2.4e-95 352.8 290 63.4
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 2.4e-95 352.8 245 71.8
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 5.5e-95 351.7 290 63.8
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 5.5e-95 351.7 287 63.8
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 7.1e-95 351.3 288 62.8
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 7.1e-95 351.3 292 63.7
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 9.3e-95 350.9 287 62.7
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.1e-94 349.7 288 64.9
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 2.1e-94 349.7 287 63.8
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 4.6e-94 348.6 288 64.9
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 7.9e-94 347.8 288 63.2
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 1.0e-93 347.4 289 64.4
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 1.8e-93 346.7 288 62.5
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 3.0e-93 345.9 289 63.0
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 5.1e-93 345.1 288 61.5
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 2.5e-92 342.8 288 60.8
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 4.3e-92 342.0 287 62.0
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 5.6e-92 341.7 287 62.4
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 5.6e-92 341.7 288 61.5
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 5.6e-92 341.7 287 60.6
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 1.6e-91 340.1 288 60.1
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 1.6e-91 340.1 270 63.7
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 8.1e-91 337.8 289 61.2
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 1.1e-90 337.4 291 60.5
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 1.4e-90 337.0 287 63.4
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 1.8e-90 336.7 289 60.6
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 1.8e-90 336.7 289 62.3
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 3.1e-90 335.9 292 61.0
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 5.3e-90 335.1 257 64.6
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 6.9e-90 334.7 260 65.8
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.9e-88 329.3 268 65.7
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 2.9e-88 329.3 287 60.6
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 3.8e-88 328.9 282 61.7
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 4.9e-88 328.6 260 64.2
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 6.5e-88 328.2 287 60.3
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 8.4e-88 327.8 270 60.7
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 8.4e-88 327.8 243 70.0
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 1.9e-87 326.6 299 58.2
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 2.5e-87 326.2 257 66.1
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 2.1e-86 323.2 288 57.6
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 3.5e-86 322.4 282 61.0
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 1.0e-85 320.9 299 57.5
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 1.1e-84 317.4 258 60.9
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 3.3e-84 315.8 270 63.0
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 3.3e-84 315.8 293 56.3
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 9.6e-84 314.3 298 55.7
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 1.3e-83 313.9 224 67.9
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 2.8e-83 312.8 222 68.0
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 6.3e-83 311.6 222 68.0
Lsat_1_v5_gn_2_108021 Lactuca sativa HOM05D005617 ORTHO05D006847 8.2e-83 311.2 287 58.2
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 3.1e-82 309.3 255 61.6
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 3.1e-82 309.3 288 57.3
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 5.3e-82 308.5 274 60.2
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 2.0e-81 306.6 294 56.1
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 4.5e-81 305.4 223 67.7
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 5.5e-79 298.5 246 65.0
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 9.3e-79 297.7 267 58.4
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 1.3e-77 293.9 270 57.0
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.3e-77 293.9 247 63.6
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 5.1e-77 292.0 233 65.2
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 1.1e-76 290.8 245 58.8
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 1.9e-76 290.0 283 52.7
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 2.5e-76 289.7 313 53.0
C08p12050 Brassica napus HOM05D005617 ORTHO05D006847 4.8e-75 285.4 240 68.8
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 1.1e-74 284.3 290 53.1
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 6.5e-72 275.0 284 52.8
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 5.5e-71 271.9 290 53.8
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 1.2e-70 270.8 276 54.7
AUR62040935 Chenopodium quinoa HOM05D005617 ORTHO05D006847 2.4e-66 256.5 184 67.4
Os08g0127600 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 9.1e-66 254.6 222 55.9
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 7.7e-65 251.5 273 50.2
Os10g0478100 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 1.0e-64 251.1 222 53.2
Zm00001eb261540 Zea mays HOM05D005617 ORTHO05D006847 1.0e-64 251.1 231 51.1
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 1.3e-64 250.8 228 54.8
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 2.2e-64 250.0 246 54.5
Atru.chr2.967 Acer truncatum HOM05D005617 ORTHO05D006847 2.9e-64 249.6 175 69.7
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 2.7e-62 243.0 173 67.1
Mapoly0036s0041 Marchantia polymorpha HOM05D005617 ORTHO05D006847 3.0e-61 239.6 251 50.6
AagrBONN_evm.TU.Sc2ySwM_344.3205 Anthoceros agrestis HOM05D005617 ORTHO05D006847 2.6e-60 236.5 267 48.3
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 1.3e-59 234.2 319 44.5
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 1.8e-53 213.8 168 64.9
Pp3c23_15250 Physcomitrium patens HOM05D005617 ORTHO05D006847 4.0e-53 212.6 253 46.2
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 9.7e-52 208.0 142 71.1
Zm00001eb173360 Zea mays HOM05D005617 ORTHO05D006847 1.8e-50 203.8 186 51.1
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 4.2e-47 192.6 243 44.0
CDE04G2248 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 9.5e-39 164.9 112 68.8
BcaC07g38407 Brassica carinata HOM05D005617 ORTHO05D006847 2.1e-38 163.7 138 63.8
CBR_g63068 Chara braunii HOM05D005617 ORTHO05D006847 1.3e-35 154.5 223 39.5
TAR365G0454 Trochodendron aralioides HOM05D005617 ORTHO05D006847 1.3e-35 154.5 218 43.1
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 3.8e-32 142.9 130 60.0
C08p11620 Brassica napus HOM05D005617 ORTHO05D006847 1.5e-31 141.0 79 83.5
C08p11690 Brassica napus HOM05D005617 ORTHO05D006847 1.5e-31 141.0 79 82.3
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 4.3e-31 139.4 112 61.6
C08p11650 Brassica napus HOM05D005617 ORTHO05D006847 1.2e-30 137.9 79 82.3
BolC8t48841H Brassica oleracea HOM05D005617 ORTHO05D006847 2.6e-28 130.2 80 80.0
SHI23140 Sapria himalayana HOM05D005617 ORTHO05D001257 7.0e-26 122.1 188 37.2
BcaC07g38438 Brassica carinata HOM05D005617 ORTHO05D006847 6.6e-24 115.5 80 76.2
Cpa.g.c45301 Carica papaya HOM05D005617 ORTHO05D006847 1.4e-21 107.8 74 66.2
BcaB01g02218 Brassica carinata HOM05D005617 ORTHO05D006847 1.6e-17 94.4 52 90.4
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 6.0e-17 92.4 146 32.9
PRCOL_00005829 Prasinoderma coloniale HOM05D005617 ORTHO05D006847 1.1e-15 88.2 197 28.9
FvH4_6g01860 Fragaria vesca HOM05D005617 ORTHO05D006847 9.5e-15 85.1 105 50.5
FAN14G4186 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.2e-14 84.7 105 49.5
FAN14G5978 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.2e-14 84.7 105 49.5
FAN09G3889 Fragaria x ananassa HOM05D005617 ORTHO05D006847 4.7e-14 82.8 105 48.6
FAN14G3066 Fragaria x ananassa HOM05D005617 ORTHO05D006847 6.2e-14 82.4 105 48.6
Rhsim04G0044500 Rhododendron simsii HOM05D005617 ORTHO05D000521 3.7e-11 73.2 65 55.4
TPR.G6979 Trifolium pratense HOM05D005617 ORTHO05D006847 8.3e-11 72.0 109 42.2
Atru.chr2.966 Acer truncatum HOM05D005617 ORTHO05D006847 2.1e-09 67.4 54 63.0
TPR.G21937 Trifolium pratense HOM05D005617 ORTHO05D006847 2.3e-08 63.9 60 56.7
Cre03.g171100 Chlamydomonas reinhardtii HOM05D005617 ORTHO05D006847 5.1e-08 62.8 231 29.0
Phvul.005G084700 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 9.5e-07 58.5 131 33.6


User provided reference genes

Program Settings