Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g34101 Brassica carinata HOM05D007045 ORTHO05D008872 6.8e-58 227.3 126 100.0
C05p06680 Brassica napus HOM05D007045 ORTHO05D008872 6.8e-58 227.3 126 100.0
BolC5t29428H Brassica oleracea HOM05D007045 ORTHO05D008872 6.8e-58 227.3 126 100.0
A06p05570 Brassica napus HOM05D007045 ORTHO05D008872 1.5e-52 209.5 126 94.4
BraA06t23765Z Brassica rapa HOM05D007045 ORTHO05D008872 1.5e-52 209.5 126 94.4
Thhalv10009120m.g Eutrema salsugineum HOM05D007045 ORTHO05D008872 3.4e-49 198.4 126 89.7
BolC8t52521H Brassica oleracea HOM05D007045 ORTHO05D008872 7.5e-49 197.2 126 88.9
C08p49930 Brassica napus HOM05D007045 ORTHO05D008872 1.7e-48 196.1 126 88.1
BraA09t41928Z Brassica rapa HOM05D007045 ORTHO05D008872 2.2e-48 195.7 126 87.3
A09p65840 Brassica napus HOM05D007045 ORTHO05D008872 3.7e-48 194.9 126 86.5
Sp1g07240 Schrenkiella parvula HOM05D007045 ORTHO05D008872 5.4e-47 191.0 126 86.5
BcaC07g41937 Brassica carinata HOM05D007045 ORTHO05D008872 1.2e-46 189.9 126 87.3
AT1G08580 Arabidopsis thaliana HOM05D007045 ORTHO05D008872 3.3e-44 181.8 126 84.1
AL1G19010 Arabidopsis lyrata HOM05D007045 ORTHO05D008872 4.1e-39 164.9 126 78.6
Aa31sc20G150 Aethionema arabicum HOM05D007045 ORTHO05D008872 3.0e-37 158.7 129 70.5
CARHR008480 Cardamine hirsuta HOM05D007045 ORTHO05D008872 3.6e-35 151.8 126 74.6
THA.LOC104821194 Tarenaya hassleriana HOM05D007045 ORTHO05D008872 2.0e-33 146.0 130 64.6
THA.LOC104805790 Tarenaya hassleriana HOM05D007045 ORTHO05D008872 4.6e-30 134.8 129 62.0
Prupe.2G325600 Prunus persica HOM05D007045 ORTHO05D008872 4.0e-26 121.7 132 54.5
Atru.chr12.1972 Acer truncatum HOM05D007045 ORTHO05D008872 8.9e-26 120.6 104 65.4
Manes.08G162500 Manihot esculenta HOM05D007045 ORTHO05D008872 8.9e-26 120.6 127 55.9
SalBow4G0316 Salvia bowleyana HOM05D007045 ORTHO05D008872 1.2e-25 120.2 126 57.1
Thecc.09G264800 Theobroma cacao HOM05D007045 ORTHO05D008872 1.5e-25 119.8 132 54.5
Carub.0001s0794 Capsella rubella HOM05D007045 ORTHO05D008872 2.0e-25 119.4 70 88.6
CiPaw.05G239000 Carya illinoinensis HOM05D007045 ORTHO05D008872 4.4e-25 118.2 128 54.7
FvH4_7g33930 Fragaria vesca HOM05D007045 ORTHO05D008872 4.4e-25 118.2 128 53.1
FAN01G0253 Fragaria x ananassa HOM05D007045 ORTHO05D008872 4.4e-25 118.2 128 53.1
TWI34G0185 Tripterygium wilfordii HOM05D007045 ORTHO05D008872 4.4e-25 118.2 128 55.5
Nn1g01937 Nelumbo nucifera HOM05D007045 ORTHO05D008872 7.6e-25 117.5 128 53.9
QL09p024203 Quercus lobata HOM05D007045 ORTHO05D008872 7.6e-25 117.5 125 52.0
QL09p024468 Quercus lobata HOM05D007045 ORTHO05D008872 7.6e-25 117.5 125 52.0
Duzib168G0464 Durio zibethinus HOM05D007045 ORTHO05D008872 9.9e-25 117.1 132 52.3
FAN03G1405 Fragaria x ananassa HOM05D007045 ORTHO05D008872 1.7e-24 116.3 128 51.6
COL.COLO4_25316 Corchorus olitorius HOM05D007045 ORTHO05D008872 2.9e-24 115.5 127 55.9
Actinidia34304 Actinidia chinensis HOM05D007045 ORTHO05D008872 4.9e-24 114.8 128 52.3
Eucgr.K00089 Eucalyptus grandis HOM05D007045 ORTHO05D008872 4.9e-24 114.8 114 55.3
Gohir.A09G104600 Gossypium hirsutum HOM05D007045 ORTHO05D008872 6.4e-24 114.4 134 53.0
Gohir.D09G101300 Gossypium hirsutum HOM05D007045 ORTHO05D008872 6.4e-24 114.4 134 53.0
Actinidia08743 Actinidia chinensis HOM05D007045 ORTHO05D008872 8.4e-24 114.0 123 56.9
Cfa015871 Carpinus fangiana HOM05D007045 ORTHO05D008872 8.4e-24 114.0 121 52.9
SGA_v2.0_scaffold44G16886 Striga asiatica HOM05D007045 ORTHO05D008872 1.4e-23 113.2 130 50.0
EL10Ac3g05081 Beta vulgaris HOM05D007045 ORTHO05D008872 1.9e-23 112.8 98 60.2
TPR.G25217 Trifolium pratense HOM05D007045 ORTHO05D008872 1.9e-23 112.8 126 51.6
Ciclev10022834m.g Citrus clementina HOM05D007045 ORTHO05D008872 3.2e-23 112.1 133 53.4
Dinv29160 Davidia involucrata HOM05D007045 ORTHO05D008872 5.4e-23 111.3 104 58.7
TAR375G0210 Trochodendron aralioides HOM05D007045 ORTHO05D008872 5.4e-23 111.3 128 50.0
GSVIVG01024412001 Vitis vinifera HOM05D007045 ORTHO05D008872 5.4e-23 111.3 125 51.2
MSTRG.26931 Avicennia marina HOM05D007045 ORTHO05D008872 1.2e-22 110.2 128 48.4
Hund09789 Selenicereus undatus HOM05D007045 ORTHO05D008872 2.7e-22 109.0 129 51.2
DCAR_020406 Daucus carota HOM05D007045 ORTHO05D008872 6.0e-22 107.8 108 56.5
Medtr6g004010 Medicago truncatula HOM05D007045 ORTHO05D008872 1.0e-21 107.1 127 48.8
SalBow4G2109 Salvia bowleyana HOM05D007045 ORTHO05D008872 1.0e-21 107.1 157 46.5
Gorai.006G118700 Gossypium raimondii HOM05D007045 ORTHO05D008872 1.3e-21 106.7 111 55.9
Psat1g052360 Pisum sativum HOM05D007045 ORTHO05D008872 1.7e-21 106.3 121 48.8
FAN10G3708 Fragaria x ananassa HOM05D007045 ORTHO05D008872 2.3e-21 105.9 103 54.4
Lsat_1_v5_gn_9_47440 Lactuca sativa HOM05D007045 ORTHO05D008872 3.0e-21 105.5 130 47.7
unitig_92.g28229 Utricularia gibba HOM05D007045 ORTHO05D008872 5.1e-21 104.8 126 50.0
ECA232G1212 Erigeron canadensis HOM05D007045 ORTHO05D008872 6.6e-21 104.4 132 48.5
Hma1.2p1_1680F.1_g297210 Hydrangea macrophylla HOM05D007045 ORTHO05D008872 6.6e-21 104.4 152 45.4
Ca_04126_v3 Cicer arietinum L. HOM05D007045 ORTHO05D008872 8.7e-21 104.0 127 48.0
Glyma.05G000800 Glycine max HOM05D007045 ORTHO05D008872 8.7e-21 104.0 126 47.6
RcHm_v2.0_Chr1g0384121 Rosa chinensis HOM05D007045 ORTHO05D008872 8.7e-21 104.0 104 55.8
Ah.04g156750 Amaranthus hybridus HOM05D007045 ORTHO05D008872 1.1e-20 103.6 98 58.2
AUR62002059 Chenopodium quinoa HOM05D007045 ORTHO05D008872 1.1e-20 103.6 127 51.2
PGSC0003DMG400000566 Solanum tuberosum HOM05D007045 ORTHO05D008872 1.1e-20 103.6 100 56.0
Sopen03g027710 Solanum pennellii HOM05D007045 ORTHO05D008872 1.5e-20 103.2 130 49.2
CSS0008098 Camellia sinensis var. sinensis HOM05D007045 ORTHO05D008872 1.9e-20 102.8 128 49.2
Nitab4.5_0011930g0010 Nicotiana tabacum HOM05D007045 ORTHO05D008872 1.9e-20 102.8 107 55.1
Sabra19G0058900 Salix brachista HOM05D007045 ORTHO05D008872 1.9e-20 102.8 128 56.2
Lj2g0018633 Lotus japonicus HOM05D007045 ORTHO05D008872 2.5e-20 102.4 127 50.4
MD07G1308400 Malus domestica HOM05D007045 ORTHO05D008872 3.3e-20 102.1 108 53.7
Sc15g0002300 Simmondsia chinensis HOM05D007045 ORTHO05D008872 3.3e-20 102.1 107 57.0
Solyc03g096960.3 Solanum lycopersicum HOM05D007045 ORTHO05D008872 3.3e-20 102.1 130 49.2
AUR62028173 Chenopodium quinoa HOM05D007045 ORTHO05D008872 9.6e-20 100.5 98 57.1
Migut.F00099 Erythranthe guttata HOM05D007045 ORTHO05D008872 1.3e-19 100.1 126 50.0
Potri.019G049300 Populus trichocarpa HOM05D007045 ORTHO05D008872 1.3e-19 100.1 127 52.8
CANSAT56G0844 Cannabis sativa HOM05D007045 ORTHO05D008872 1.6e-19 99.8 84 66.7
CANSAT56G3248 Cannabis sativa HOM05D007045 ORTHO05D008872 1.6e-19 99.8 84 66.7
Peaxi162Scf00745g00819 Petunia axillaris HOM05D007045 ORTHO05D008872 1.6e-19 99.8 85 58.8
VMungo0464G1228 Vigna mungo HOM05D007045 ORTHO05D008872 2.1e-19 99.4 126 46.0
arahy.Tifrunner.gnm1.ann1.X2XK4P Arachis hypogaea HOM05D007045 ORTHO05D008872 2.8e-19 99.0 133 48.1
arahy.Tifrunner.gnm1.ann1.X6PR1P Arachis hypogaea HOM05D007045 ORTHO05D008872 2.8e-19 99.0 109 53.2
Oeu041498.1 Olea europaea HOM05D007045 ORTHO05D008872 2.8e-19 99.0 108 52.8
Glyma.19G000800 Glycine max HOM05D007045 ORTHO05D008872 8.1e-19 97.4 104 51.0
HanXRQChr05g0141731 Helianthus annuus HOM05D007045 ORTHO05D008872 1.1e-18 97.1 126 45.2
MD01G1235600 Malus domestica HOM05D007045 ORTHO05D008872 1.1e-18 97.1 76 59.2
HPP92_009021 Vanilla planifolia HOM05D007045 ORTHO05D008872 1.1e-18 97.1 113 49.6
Nitab4.5_0000021g0510 Nicotiana tabacum HOM05D007045 ORTHO05D008872 1.8e-18 96.3 127 46.5
PSO063G7366 Papaver somniferum HOM05D007045 ORTHO05D008872 1.8e-18 96.3 127 45.7
PSO782G4413 Papaver somniferum HOM05D007045 ORTHO05D008872 1.8e-18 96.3 127 45.7
CDE03G0192 Ceratophyllum demersum HOM05D007045 ORTHO05D008872 6.9e-18 94.4 106 52.8
Os02g0604100 Oryza sativa ssp. japonica HOM05D007045 ORTHO05D008872 9.0e-18 94.0 130 51.5
vmacro10189 Vaccinium macrocarpon HOM05D007045 ORTHO05D008872 2.6e-17 92.4 77 62.3
vmacro23523 Vaccinium macrocarpon HOM05D007045 ORTHO05D008872 2.6e-17 92.4 77 62.3
PGR142G4292 Punica granatum HOM05D007045 ORTHO05D008872 3.4e-17 92.0 122 51.6
CAN.G303.80 Capsicum annuum HOM05D007045 ORTHO05D008872 5.8e-17 91.3 126 47.6
Phvul.004G000900 Phaseolus vulgaris HOM05D007045 ORTHO05D008872 7.6e-17 90.9 128 44.5
Potri.013G091200 Populus trichocarpa HOM05D007045 ORTHO05D008872 6.4e-16 87.8 84 56.0
CDE06G1066 Ceratophyllum demersum HOM05D007045 ORTHO05D008872 1.9e-15 86.3 86 52.3
Zm00001eb246550 Zea mays HOM05D007045 ORTHO05D008872 4.2e-15 85.1 130 46.2
Aqoxy3G02091 Aquilegia oxysepala HOM05D007045 ORTHO05D008872 7.9e-14 80.9 133 44.4
Sed0010546 Sechium edule HOM05D007045 ORTHO05D008872 1.0e-13 80.5 108 45.4
Cc02_g00300 Coffea canephora HOM05D007045 ORTHO05D008872 1.7e-13 79.7 139 41.7
ATR0829G056 Amborella trichopoda HOM05D007045 ORTHO05D008872 3.9e-13 78.6 126 44.4
CsaV3_3G015710 Cucumis sativus L. HOM05D007045 ORTHO05D008872 1.9e-12 76.3 104 45.2
MELO3C006770.2 Cucumis melo HOM05D007045 ORTHO05D008872 1.3e-11 73.6 104 43.3
ClCG05G007020 Citrullus lanatus HOM05D007045 ORTHO05D008872 2.6e-09 65.9 104 41.3
MELO3C032558.2 Cucumis melo HOM05D007045 ORTHO05D008872 1.3e-08 63.5 77 48.1


User provided reference genes

Program Settings