Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t29337H Brassica oleracea HOM05D006284 ORTHO05D007793 2.1e-94 349.0 172 100.0
BraA06t23686Z Brassica rapa HOM05D006284 ORTHO05D007793 2.8e-78 295.4 171 88.3
C05p05670 Brassica napus HOM05D006284 ORTHO05D007793 1.4e-74 283.1 138 100.0
A06p04820 Brassica napus HOM05D006284 ORTHO05D007793 7.8e-73 277.3 138 97.8
BcaC07g41981 Brassica carinata HOM05D006284 ORTHO05D007793 9.9e-68 260.4 138 92.0
BcaC07g42491 Brassica carinata HOM05D006284 ORTHO05D007793 9.9e-68 260.4 138 92.0
BcaC07g42493 Brassica carinata HOM05D006284 ORTHO05D007793 9.9e-68 260.4 138 92.8
C08p50410 Brassica napus HOM05D006284 ORTHO05D007793 9.9e-68 260.4 138 92.0
BolC8t52569H Brassica oleracea HOM05D006284 ORTHO05D007793 9.9e-68 260.4 138 92.0
Thhalv10009069m.g Eutrema salsugineum HOM05D006284 ORTHO05D007793 1.7e-67 259.6 138 92.0
A09p66230 Brassica napus HOM05D006284 ORTHO05D007793 8.4e-67 257.3 138 91.3
Carub.0001s0699 Capsella rubella HOM05D006284 ORTHO05D007793 1.9e-66 256.1 138 89.9
AL1G17850 Arabidopsis lyrata HOM05D006284 ORTHO05D007793 2.4e-66 255.8 138 89.9
BraA09t41961Z Brassica rapa HOM05D006284 ORTHO05D007793 3.2e-66 255.4 138 90.6
AT1G07645 Arabidopsis thaliana HOM05D006284 ORTHO05D007793 1.2e-65 253.4 138 89.1
BcaC07g42490 Brassica carinata HOM05D006284 ORTHO05D007793 3.5e-65 251.9 139 90.6
Sp1g06380 Schrenkiella parvula HOM05D006284 ORTHO05D007793 3.5e-65 251.9 138 89.9
CARHR007450 Cardamine hirsuta HOM05D006284 ORTHO05D007793 6.6e-64 247.7 138 87.7
Aa31sc281G30 Aethionema arabicum HOM05D006284 ORTHO05D007793 1.5e-63 246.5 138 89.9
Hma1.2p1_1897F.1_g306861 Hydrangea macrophylla HOM05D006284 ORTHO05D007793 7.1e-58 227.6 135 82.2
Atru.chr3.3846 Acer truncatum HOM05D006284 ORTHO05D007793 9.3e-58 227.3 137 82.5
Cpa.g.sc190.6 Carica papaya HOM05D006284 ORTHO05D007793 1.2e-57 226.9 130 84.6
QL01p032751 Quercus lobata HOM05D006284 ORTHO05D007793 1.6e-57 226.5 137 82.5
arahy.Tifrunner.gnm1.ann1.W3SBYC Arachis hypogaea HOM05D006284 ORTHO05D007793 4.6e-57 224.9 138 81.9
Psat7g217680 Pisum sativum HOM05D006284 ORTHO05D007793 1.0e-56 223.8 138 78.3
CiPaw.13G097000 Carya illinoinensis HOM05D006284 ORTHO05D007793 1.7e-56 223.0 137 80.3
Dinv03613 Davidia involucrata HOM05D006284 ORTHO05D007793 2.3e-56 222.6 135 80.0
Medtr4g063500 Medicago truncatula HOM05D006284 ORTHO05D007793 5.1e-56 221.5 138 78.3
HanXRQChr15g0493271 Helianthus annuus HOM05D006284 ORTHO05D007793 6.6e-56 221.1 138 79.7
FAN11G1150 Fragaria x ananassa HOM05D006284 ORTHO05D007793 8.7e-56 220.7 137 80.3
FAN21G0749 Fragaria x ananassa HOM05D006284 ORTHO05D007793 8.7e-56 220.7 137 80.3
arahy.Tifrunner.gnm1.ann1.6H51DS Arachis hypogaea HOM05D006284 ORTHO05D007793 1.1e-55 220.3 138 80.4
Ca_19180_v3 Cicer arietinum L. HOM05D006284 ORTHO05D007793 1.1e-55 220.3 138 76.1
Ca_31183_v3 Cicer arietinum L. HOM05D006284 ORTHO05D007793 1.1e-55 220.3 138 76.1
PSO339G4936 Papaver somniferum HOM05D006284 ORTHO05D007793 1.1e-55 220.3 136 78.7
FAN16G2200 Fragaria x ananassa HOM05D006284 ORTHO05D007793 1.9e-55 219.5 137 79.6
Lj3g0026697 Lotus japonicus HOM05D006284 ORTHO05D007793 1.9e-55 219.5 138 78.3
Lsat_1_v5_gn_5_183840 Lactuca sativa HOM05D006284 ORTHO05D007793 3.3e-55 218.8 138 79.7
SalBow5G5166 Salvia bowleyana HOM05D006284 ORTHO05D007793 3.3e-55 218.8 138 78.3
Rhsim01G0226200 Rhododendron simsii HOM05D006284 ORTHO05D007793 4.3e-55 218.4 137 78.8
Migut.L00518 Erythranthe guttata HOM05D006284 ORTHO05D007793 5.6e-55 218.0 138 79.7
Lalb_Chr01g0003741 Lupinus albus HOM05D006284 ORTHO05D007793 7.3e-55 217.6 140 78.6
TAR623G0100 Trochodendron aralioides HOM05D006284 ORTHO05D007793 9.6e-55 217.2 137 78.8
vmacro14530 Vaccinium macrocarpon HOM05D006284 ORTHO05D007793 9.6e-55 217.2 137 78.1
CANSAT54G2008 Cannabis sativa HOM05D006284 ORTHO05D007793 1.3e-54 216.9 138 73.2
COL.COLO4_18479 Corchorus olitorius HOM05D006284 ORTHO05D007793 1.3e-54 216.9 141 75.9
Sabra16G0143200 Salix brachista HOM05D006284 ORTHO05D007793 1.3e-54 216.9 137 78.1
ECA247G3393 Erigeron canadensis HOM05D006284 ORTHO05D007793 1.6e-54 216.5 138 77.5
Haze_24061 Corylus avellana HOM05D006284 ORTHO05D007793 2.1e-54 216.1 137 78.1
Potri.001G237500 Populus trichocarpa HOM05D006284 ORTHO05D007793 3.6e-54 215.3 137 75.9
PSO384G0339 Papaver somniferum HOM05D006284 ORTHO05D007793 4.8e-54 214.9 136 77.2
EL10Ac7g15985 Beta vulgaris HOM05D006284 ORTHO05D007793 6.2e-54 214.5 137 76.6
Nitab4.5_0001304g0050 Nicotiana tabacum HOM05D006284 ORTHO05D007793 6.2e-54 214.5 137 75.2
RcHm_v2.0_Chr5g0063801 Rosa chinensis HOM05D006284 ORTHO05D007793 6.2e-54 214.5 137 78.8
Sed0023805 Sechium edule HOM05D006284 ORTHO05D007793 6.2e-54 214.5 137 76.6
Prupe.6G080800 Prunus persica HOM05D006284 ORTHO05D007793 8.1e-54 214.2 128 79.7
THA.LOC104800652 Tarenaya hassleriana HOM05D006284 ORTHO05D007793 8.1e-54 214.2 137 75.2
Thecc.09G324900 Theobroma cacao HOM05D006284 ORTHO05D007793 8.1e-54 214.2 138 76.8
Aqoxy4G02964 Aquilegia oxysepala HOM05D006284 ORTHO05D007793 1.1e-53 213.8 135 74.8
Duzib168G1259 Durio zibethinus HOM05D006284 ORTHO05D007793 1.1e-53 213.8 138 76.1
Gorai.009G100800 Gossypium raimondii HOM05D006284 ORTHO05D007793 1.4e-53 213.4 139 75.5
VMungo1127G1430 Vigna mungo HOM05D006284 ORTHO05D007793 1.4e-53 213.4 138 76.8
Sc06g0008270 Simmondsia chinensis HOM05D006284 ORTHO05D007793 1.8e-53 213.0 132 76.5
Gohir.A05G097100 Gossypium hirsutum HOM05D006284 ORTHO05D007793 2.4e-53 212.6 139 75.5
Lsat_1_v5_gn_9_22581 Lactuca sativa HOM05D006284 ORTHO05D007793 2.4e-53 212.6 133 78.9
MSTRG.15272 Avicennia marina HOM05D006284 ORTHO05D007793 3.1e-53 212.2 138 77.5
Manes.11G132300 Manihot esculenta HOM05D006284 ORTHO05D007793 4.0e-53 211.8 137 73.7
MD11G1144900 Malus domestica HOM05D006284 ORTHO05D007793 5.3e-53 211.5 128 78.1
ClCG02G020310 Citrullus lanatus HOM05D006284 ORTHO05D007793 6.9e-53 211.1 137 75.2
Phvul.011G065500 Phaseolus vulgaris HOM05D006284 ORTHO05D007793 6.9e-53 211.1 138 76.1
DCAR_015613 Daucus carota HOM05D006284 ORTHO05D007793 9.0e-53 210.7 137 75.2
Nitab4.5_0001838g0030 Nicotiana tabacum HOM05D006284 ORTHO05D007793 1.2e-52 210.3 137 74.5
GSVIVG01025000001 Vitis vinifera HOM05D006284 ORTHO05D007793 2.0e-52 209.5 137 75.9
Sopen06g032410 Solanum pennellii HOM05D006284 ORTHO05D007793 7.6e-52 207.6 138 72.5
Solyc06g075990.4 Solanum lycopersicum HOM05D006284 ORTHO05D007793 9.9e-52 207.2 137 72.3
PGSC0003DMG400030315 Solanum tuberosum HOM05D006284 ORTHO05D007793 9.9e-52 207.2 138 73.2
Oeu056746.1 Olea europaea HOM05D006284 ORTHO05D007793 1.3e-51 206.8 137 73.7
Eucgr.B02382 Eucalyptus grandis HOM05D006284 ORTHO05D007793 1.7e-51 206.5 133 74.4
Glyma.12G064500 Glycine max HOM05D006284 ORTHO05D007793 1.7e-51 206.5 137 75.2
MELO3C013690.2 Cucumis melo HOM05D006284 ORTHO05D007793 2.2e-51 206.1 137 73.0
Actinidia33860 Actinidia chinensis HOM05D006284 ORTHO05D007793 3.8e-51 205.3 137 74.5
CAN.G394.47 Capsicum annuum HOM05D006284 ORTHO05D007793 4.9e-51 204.9 137 72.3
Oeu041449.2 Olea europaea HOM05D006284 ORTHO05D007793 4.9e-51 204.9 137 74.5
AUR62009602 Chenopodium quinoa HOM05D006284 ORTHO05D007793 6.4e-51 204.5 137 73.0
Peaxi162Scf00679g00212 Petunia axillaris HOM05D006284 ORTHO05D007793 6.4e-51 204.5 137 73.7
AUR62001816 Chenopodium quinoa HOM05D006284 ORTHO05D007793 8.4e-51 204.1 132 74.2
Gohir.D05G097250 Gossypium hirsutum HOM05D006284 ORTHO05D007793 8.4e-51 204.1 135 72.6
CsaV3_6G017010 Cucumis sativus L. HOM05D006284 ORTHO05D007793 9.3e-50 200.7 137 70.8
Migut.L00567 Erythranthe guttata HOM05D006284 ORTHO05D007793 9.3e-50 200.7 130 78.5
PGR102G0171 Punica granatum HOM05D006284 ORTHO05D007793 2.1e-49 199.5 138 71.7
Os03g0277500 Oryza sativa ssp. japonica HOM05D006284 ORTHO05D007793 4.6e-49 198.4 133 72.2
SGA_v2.0_scaffold606G53170 Striga asiatica HOM05D006284 ORTHO05D007793 5.6e-47 191.4 132 71.2
TWI79G0071 Tripterygium wilfordii HOM05D006284 ORTHO05D007793 3.7e-46 188.7 138 72.5
SHI00991 Sapria himalayana HOM05D006284 ORTHO05D007793 2.4e-45 186.0 130 68.5
Zm00001eb012550 Zea mays HOM05D006284 ORTHO05D007793 9.0e-45 184.1 138 65.2
Ciclev10029580m.g Citrus clementina HOM05D006284 ORTHO05D007793 2.1e-41 172.9 117 72.6
Gohir.A07G096400 Gossypium hirsutum HOM05D006284 ORTHO05D007793 2.1e-41 172.9 153 61.4
Gorai.001G108700 Gossypium raimondii HOM05D006284 ORTHO05D007793 9.6e-39 164.1 133 64.7
Gohir.D07G100800 Gossypium hirsutum HOM05D006284 ORTHO05D007793 1.6e-38 163.3 171 55.6
Mapoly0004s0146 Marchantia polymorpha HOM05D006284 ORTHO05D007793 2.1e-38 162.9 129 63.6
MBI14_g11686_MAGBIO Magnolia biondii HOM05D006284 ORTHO05D007793 1.4e-37 160.2 94 81.9
SMO165G0091 Selaginella moellendorffii HOM05D006284 ORTHO05D007793 3.1e-37 159.1 130 56.2
Lj2A1058T40 Lonicera japonica HOM05D006284 ORTHO05D007793 1.5e-36 156.8 96 79.2
TPR.G10205 Trifolium pratense HOM05D006284 ORTHO05D007793 1.1e-34 150.6 102 70.6
FvH4_3g35580 Fragaria vesca HOM05D006284 ORTHO05D007793 3.5e-33 145.6 137 62.0
DCAR_018897 Daucus carota HOM05D006284 ORTHO05D007793 4.6e-33 145.2 97 71.1
Oeu033642.1 Olea europaea HOM05D006284 ORTHO05D007793 1.0e-32 144.1 102 69.6
Oeu056758.1 Olea europaea HOM05D006284 ORTHO05D007793 7.4e-31 137.9 98 70.4
Oeu056743.1 Olea europaea HOM05D006284 ORTHO05D007793 6.3e-30 134.8 98 66.3
Oeu056739.1 Olea europaea HOM05D006284 ORTHO05D007793 1.1e-29 134.0 142 52.8
CSS0000036 Camellia sinensis var. sinensis HOM05D006284 ORTHO05D007793 1.5e-28 130.2 135 53.3
FAN11G3292 Fragaria x ananassa HOM05D006284 ORTHO05D007793 1.3e-27 127.1 137 56.9
SEGI_15500 Sequoiadendron giganteum HOM05D006284 ORTHO05D007793 1.9e-23 113.2 91 62.6
AagrBONN_evm.TU.Sc2ySwM_117.384 Anthoceros agrestis HOM05D006284 ORTHO05D007793 1.3e-22 110.5 137 46.7
AagrBONN_evm.TU.Sc2ySwM_344.4820 Anthoceros agrestis HOM05D006284 ORTHO05D007793 6.9e-21 104.8 96 53.1
Peaxi162Scf00406g00314 Petunia axillaris HOM05D006284 ORTHO05D007793 2.6e-20 102.8 137 44.5
CANSAT21G1079 Cannabis sativa HOM05D002411 ORTHO05D002564 1.1e-18 97.4 60 71.7
AagrBONN_evm.TU.Sc2ySwM_344.4822 Anthoceros agrestis HOM05D018382 ORTHO05D001873 2.5e-18 96.3 124 41.9
MD07G1053700 Malus domestica HOM05D006284 ORTHO05D007793 6.1e-17 91.7 54 74.1
Pp3c19_1590 Physcomitrium patens HOM05D006284 ORTHO05D007793 1.4e-16 90.5 127 39.4
FvH4_3g35610 Fragaria vesca HOM05D006284 ORTHO05D007793 1.8e-16 90.1 137 43.1
MD14G1025700 Malus domestica HOM05D006284 ORTHO05D007793 3.0e-16 89.4 54 72.2
Cc01_g12610 Coffea canephora HOM05D006284 ORTHO05D007793 9.7e-15 84.3 49 79.6
TPR.G10968 Trifolium pratense HOM05D006284 ORTHO05D007793 3.1e-13 79.3 40 92.5
Ah.08g219180 Amaranthus hybridus HOM05D006284 ORTHO05D007793 4.2e-10 68.9 41 78.0
ATR0559G308 Amborella trichopoda HOM05D006284 ORTHO05D007793 1.0e-08 64.3 37 78.4
Cc01_g12620 Coffea canephora HOM05D006284 ORTHO05D007793 4.8e-06 55.5 30 83.3


User provided reference genes

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