Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g42458 Brassica carinata HOM05D005325 ORTHO05D003507 2.4e-66 255.4 132 100.0
BolC5t29309H Brassica oleracea HOM05D005325 ORTHO05D003507 2.4e-66 255.4 132 100.0
BraA10t42849Z Brassica rapa HOM05D005325 ORTHO05D003507 2.3e-64 248.8 132 97.0
A10p05870 Brassica napus HOM05D005325 ORTHO05D003507 1.4e-61 239.6 132 95.5
C05p05370 Brassica napus HOM05D005325 ORTHO05D003507 1.7e-59 232.6 130 92.3
Sp1g06050 Schrenkiella parvula HOM05D005325 ORTHO05D003507 9.0e-53 210.3 130 87.7
BraA09t41987Z Brassica rapa HOM05D005325 ORTHO05D003507 3.8e-51 204.9 130 83.1
BcaC07g42009 Brassica carinata HOM05D005325 ORTHO05D003507 6.4e-51 204.1 130 85.4
C08p50660 Brassica napus HOM05D005325 ORTHO05D003507 1.9e-50 202.6 130 84.6
BolC8t52594H Brassica oleracea HOM05D005325 ORTHO05D003507 1.9e-50 202.6 130 84.6
Thhalv10009101m.g Eutrema salsugineum HOM05D005325 ORTHO05D003507 1.6e-49 199.5 129 84.5
AL1G17450 Arabidopsis lyrata HOM05D005325 ORTHO05D003507 7.4e-47 190.7 130 79.2
AT1G07300 Arabidopsis thaliana HOM05D005325 ORTHO05D003507 1.5e-44 183.0 128 77.3
Carub.0001s0660 Capsella rubella HOM05D005325 ORTHO05D003507 3.2e-42 175.3 131 74.0
CARHR007020 Cardamine hirsuta HOM05D005325 ORTHO05D003507 2.3e-40 169.1 128 75.8
Aa31LG5G6840 Aethionema arabicum HOM05D005325 ORTHO05D003507 2.5e-39 165.6 132 68.2
Aa31LG1G6560 Aethionema arabicum HOM05D005325 ORTHO05D003507 1.2e-36 156.8 132 68.2
Carub.0004s1074 Capsella rubella HOM05D005325 ORTHO05D003507 2.1e-33 146.0 132 64.4
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 3.9e-32 141.7 131 64.1
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 5.1e-32 141.4 131 63.4
Sp4g12360 Schrenkiella parvula HOM05D005325 ORTHO05D003507 1.3e-30 136.7 130 62.3
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 8.2e-30 134.0 130 60.0
BcaB06g28321 Brassica carinata HOM05D005325 ORTHO05D003507 1.4e-29 133.3 131 58.0
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 1.8e-29 132.9 130 61.5
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 3.1e-29 132.1 128 60.2
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 1.2e-28 130.2 133 59.4
BcaC02g11049 Brassica carinata HOM05D005325 ORTHO05D003507 1.2e-28 130.2 129 61.2
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 1.2e-28 130.2 133 59.4
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 1.2e-28 130.2 129 61.2
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 3.4e-28 128.6 131 59.5
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 1.7e-27 126.3 129 58.9
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 1.1e-26 123.6 133 57.9
CARHR122980 Cardamine hirsuta HOM05D005325 ORTHO05D003507 7.2e-26 120.9 125 56.0
BcaB02g10272 Brassica carinata HOM05D005325 ORTHO05D003507 1.0e-24 117.1 115 60.0
Actinidia25149 Actinidia chinensis HOM05D004233 ORTHO05D003507 9.7e-15 84.0 110 46.4
Ciclev10029412m.g Citrus clementina HOM05D004233 ORTHO05D003507 1.1e-13 80.5 108 46.3
Rhsim13G0071800 Rhododendron simsii HOM05D004233 ORTHO05D003507 1.6e-12 76.6 130 42.3
Cc01_g13980 Coffea canephora HOM05D004233 ORTHO05D003507 6.5e-11 71.2 95 47.4
Gorai.003G124100 Gossypium raimondii HOM05D004233 ORTHO05D003507 1.5e-10 70.1 94 50.0
Gohir.D03G117700 Gossypium hirsutum HOM05D004233 ORTHO05D003507 1.9e-10 69.7 94 50.0
Duzib150G0257 Durio zibethinus HOM05D004233 ORTHO05D003507 4.2e-10 68.6 131 42.7
Gohir.A03G049600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 4.2e-10 68.6 94 48.9
TAR623G0525 Trochodendron aralioides HOM05D004233 ORTHO05D003507 4.2e-10 68.6 88 48.9
Manes.09G103100 Manihot esculenta HOM05D004233 ORTHO05D003507 9.4e-10 67.4 136 41.9
QL01p037420 Quercus lobata HOM05D004233 ORTHO05D003507 9.4e-10 67.4 94 51.1
Haze_24266 Corylus avellana HOM05D004233 ORTHO05D003507 1.2e-09 67.0 89 47.2
Thecc.05G020400 Theobroma cacao HOM05D004233 ORTHO05D003507 1.6e-09 66.6 89 48.3
Nn2g13635 Nelumbo nucifera HOM05D004233 ORTHO05D003507 2.1e-09 66.2 107 39.3
Dinv37074 Davidia involucrata HOM05D004233 ORTHO05D003507 2.7e-09 65.9 85 49.4
COL.COLO4_14571 Corchorus olitorius HOM05D004233 ORTHO05D003507 3.6e-09 65.5 89 46.1
Sabra16G0108400 Salix brachista HOM05D004233 ORTHO05D003507 4.7e-09 65.1 96 46.9
TWI79G1354 Tripterygium wilfordii HOM05D004233 ORTHO05D003507 4.7e-09 65.1 93 48.4
Gohir.D05G090600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 6.1e-09 64.7 89 48.3
Gorai.009G093100 Gossypium raimondii HOM05D004233 ORTHO05D003507 6.1e-09 64.7 89 48.3
Hma1.2p1_0227F.1_g096330 Hydrangea macrophylla HOM05D004233 ORTHO05D003507 8.0e-09 64.3 89 44.9
Potri.001G249500 Populus trichocarpa HOM05D004233 ORTHO05D003507 8.0e-09 64.3 116 44.0
Gohir.A05G089700 Gossypium hirsutum HOM05D004233 ORTHO05D003507 1.0e-08 63.9 89 48.3
CiPaw.13G080500 Carya illinoinensis HOM05D004233 ORTHO05D003507 1.4e-08 63.5 93 44.1
Gorai.001G115000 Gossypium raimondii HOM05D004233 ORTHO05D003507 1.4e-08 63.5 89 46.1
Nitab4.5_0000102g0150 Nicotiana tabacum HOM05D004233 ORTHO05D003507 2.3e-08 62.8 96 36.5
Potri.016G112700 Populus trichocarpa HOM05D004233 ORTHO05D003507 3.0e-08 62.4 133 38.3
Duzib106G0630 Durio zibethinus HOM05D004233 ORTHO05D003507 4.0e-08 62.0 89 46.1
Gohir.D07G106900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 6.7e-08 61.2 82 47.6
Potri.006G097700 Populus trichocarpa HOM05D004233 ORTHO05D003507 6.7e-08 61.2 101 43.6
Ciclev10013109m.g Citrus clementina HOM05D004233 ORTHO05D003507 1.2e-07 60.5 85 43.5
Gohir.A07G102900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 1.5e-07 60.1 89 47.2
Gohir.D01G215600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 1.5e-07 60.1 85 48.2
Gorai.002G261800 Gossypium raimondii HOM05D004233 ORTHO05D003507 1.5e-07 60.1 85 48.2
Solyc06g006090.1 Solanum lycopersicum HOM05D004233 ORTHO05D003507 1.5e-07 60.1 94 39.4
Aqoxy4G02651 Aquilegia oxysepala HOM05D004233 ORTHO05D003507 2.0e-07 59.7 135 34.8
Atru.chr8.2208 Acer truncatum HOM05D004233 ORTHO05D003507 2.6e-07 59.3 86 46.5
Gohir.A01G225900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 3.3e-07 58.9 85 47.1
Sopen06g002040 Solanum pennellii HOM05D004233 ORTHO05D003507 3.3e-07 58.9 94 39.4
Peaxi162Scf00056g00201 Petunia axillaris HOM05D004233 ORTHO05D003507 4.4e-07 58.5 90 40.0
Glyma.03G078400 Glycine max HOM05D004233 ORTHO05D003507 7.5e-07 57.8 110 36.4
PGSC0003DMG400004152 Solanum tuberosum HOM05D004233 ORTHO05D003507 7.5e-07 57.8 94 38.3
Duzib093G0978 Durio zibethinus HOM05D004233 ORTHO05D003507 9.7e-07 57.4 85 45.9
Duzib128G0556 Durio zibethinus HOM05D004233 ORTHO05D003507 1.3e-06 57.0 85 45.9
Hma1.2p1_0763F.1_g214800 Hydrangea macrophylla HOM05D004233 ORTHO05D003507 1.3e-06 57.0 87 46.0
MBI05_g30571_MAGBIO Magnolia biondii HOM05D004233 ORTHO05D003507 1.3e-06 57.0 85 45.9
Nn1g02891 Nelumbo nucifera HOM05D004233 ORTHO05D003507 1.3e-06 57.0 85 45.9
Oeu045519.1 Olea europaea HOM05D004233 ORTHO05D003507 1.3e-06 57.0 106 40.6
CAN.G780.3 Capsicum annuum HOM05D004233 ORTHO05D003507 1.7e-06 56.6 127 31.5
MELO3C009185.2 Cucumis melo HOM05D004233 ORTHO05D003507 2.8e-06 55.8 129 35.7
DCAR_007388 Daucus carota HOM05D004233 ORTHO05D003507 2.8e-06 55.8 119 37.8
Lsat_1_v5_gn_9_20140 Lactuca sativa HOM05D004233 ORTHO05D003507 2.8e-06 55.8 110 37.3
arahy.Tifrunner.gnm1.ann1.0452KN Arachis hypogaea HOM05D010371 ORTHO05D003507 3.7e-06 55.5 90 41.1
QL07p036016 Quercus lobata HOM05D004233 ORTHO05D003507 3.7e-06 55.5 87 43.7
THA.LOC104823286 Tarenaya hassleriana HOM05D004233 ORTHO05D003507 3.7e-06 55.5 83 45.8
Sabra06G0075200 Salix brachista HOM05D004233 ORTHO05D003507 4.8e-06 55.1 129 35.7
ClCG10G021920 Citrullus lanatus HOM05D004233 ORTHO05D003507 6.3e-06 54.7 129 36.4
Psat2g059280 Pisum sativum HOM05D010371 ORTHO05D003507 6.3e-06 54.7 90 40.0
CsaV3_4G026060 Cucumis sativus L. HOM05D004233 ORTHO05D003507 8.2e-06 54.3 83 34.9
Gohir.A09G163800 Gossypium hirsutum HOM05D004233 ORTHO05D003507 8.2e-06 54.3 89 43.8
Gohir.D09G159300 Gossypium hirsutum HOM05D004233 ORTHO05D003507 8.2e-06 54.3 89 43.8
Gorai.006G181000 Gossypium raimondii HOM05D004233 ORTHO05D003507 8.2e-06 54.3 89 43.8
Phvul.008G262500 Phaseolus vulgaris HOM05D010371 ORTHO05D003507 8.2e-06 54.3 94 40.4
Potri.009G043501 Populus trichocarpa HOM05D004233 ORTHO05D003507 8.2e-06 54.3 98 44.9


User provided reference genes

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