Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t29305H Brassica oleracea HOM05D003657 ORTHO05D004286 2.8e-20 100.9 48 100.0
AT1G07270 Arabidopsis thaliana HOM05D003657 ORTHO05D004286 7.6e-18 92.8 48 91.7
Carub.0001s0657 Capsella rubella HOM05D003657 ORTHO05D004286 7.6e-18 92.8 47 91.5
CARHR006990 Cardamine hirsuta HOM05D003657 ORTHO05D004286 2.2e-17 91.3 48 87.5
THA.LOC104800725 Tarenaya hassleriana HOM05D003657 ORTHO05D004286 2.2e-17 91.3 48 85.4
AL1G17420 Arabidopsis lyrata HOM05D003657 ORTHO05D004286 3.8e-17 90.5 48 89.6
THA.LOC104816080 Tarenaya hassleriana HOM05D003657 ORTHO05D004286 2.4e-16 87.8 48 81.2
BcaC02g11054 Brassica carinata HOM05D003657 ORTHO05D004286 7.1e-16 86.3 48 83.3
CARHR123010 Cardamine hirsuta HOM05D003657 ORTHO05D004286 1.2e-15 85.5 48 83.3
Carub.0004s1078 Capsella rubella HOM05D003657 ORTHO05D004286 2.7e-15 84.3 48 81.2
Aa31LG5G550 Aethionema arabicum HOM05D003657 ORTHO05D004286 3.5e-15 84.0 48 79.2
AL4G24450 Arabidopsis lyrata HOM05D003657 ORTHO05D004286 4.6e-15 83.6 48 81.2
BolC3t15469H Brassica oleracea HOM05D003657 ORTHO05D004286 4.6e-15 83.6 48 81.2
Thhalv10016540m.g Eutrema salsugineum HOM05D003657 ORTHO05D004286 4.6e-15 83.6 48 81.2
TWI14G1047 Tripterygium wilfordii HOM05D003657 ORTHO05D004286 4.6e-15 83.6 47 76.6
Eucgr.B02268 Eucalyptus grandis HOM05D003657 ORTHO05D004286 6.0e-15 83.2 47 72.3
ATR0618G109 Amborella trichopoda HOM05D003657 ORTHO05D004286 7.9e-15 82.8 47 74.5
AT2G29680 Arabidopsis thaliana HOM05D003657 ORTHO05D004286 7.9e-15 82.8 48 81.2
Lalb_Chr17g0345031 Lupinus albus HOM05D003657 ORTHO05D004286 7.9e-15 82.8 47 74.5
CiPaw.13G079800 Carya illinoinensis HOM05D003657 ORTHO05D004286 1.0e-14 82.4 47 76.6
Haze_24275 Corylus avellana HOM05D003657 ORTHO05D004286 1.0e-14 82.4 47 76.6
GSVIVG01024772001 Vitis vinifera HOM05D003657 ORTHO05D004286 1.0e-14 82.4 47 76.6
PSO384G3334 Papaver somniferum HOM05D003657 ORTHO05D004286 1.8e-14 81.6 47 74.5
Lj6g0007931 Lotus japonicus HOM05D003657 ORTHO05D004286 2.3e-14 81.3 47 74.5
Sp4g12400 Schrenkiella parvula HOM05D003657 ORTHO05D004286 2.3e-14 81.3 48 79.2
TWI79G1454 Tripterygium wilfordii HOM05D003657 ORTHO05D004286 2.3e-14 81.3 48 72.9
PSO339G1362 Papaver somniferum HOM05D003657 ORTHO05D004286 3.0e-14 80.9 47 74.5
PGR102G3249 Punica granatum HOM05D003657 ORTHO05D004286 3.0e-14 80.9 47 68.1
Cfa011669 Carpinus fangiana HOM05D003657 ORTHO05D004286 3.9e-14 80.5 47 74.5
DCAR_018959 Daucus carota HOM05D003657 ORTHO05D004286 3.9e-14 80.5 47 70.2
Nn2g13661 Nelumbo nucifera HOM05D003657 ORTHO05D004286 3.9e-14 80.5 47 70.2
Lalb_Chr04g0252271 Lupinus albus HOM05D003657 ORTHO05D004286 5.1e-14 80.1 47 70.2
Aqoxy2G02701 Aquilegia oxysepala HOM05D003657 ORTHO05D004286 6.7e-14 79.7 47 74.5
Aqoxy4G02626 Aquilegia oxysepala HOM05D003657 ORTHO05D004286 6.7e-14 79.7 47 74.5
HanXRQChr08g0229531 Helianthus annuus HOM05D003657 ORTHO05D004286 6.7e-14 79.7 47 74.5
HanXRQChr17g0562071 Helianthus annuus HOM05D003657 ORTHO05D004286 6.7e-14 79.7 47 74.5
Solyc06g076860.4 Solanum lycopersicum HOM05D003657 ORTHO05D004286 6.7e-14 79.7 47 74.5
Sopen06g033250 Solanum pennellii HOM05D003657 ORTHO05D004286 6.7e-14 79.7 47 74.5
PGSC0003DMG400030351 Solanum tuberosum HOM05D003657 ORTHO05D004286 6.7e-14 79.7 47 74.5
Thecc.09G304100 Theobroma cacao HOM05D003657 ORTHO05D004286 6.7e-14 79.7 47 72.3
Aa31LG5G6800 Aethionema arabicum HOM05D003657 ORTHO05D004286 8.7e-14 79.3 48 75.0
Glyma.18G066900 Glycine max HOM05D003657 ORTHO05D004286 8.7e-14 79.3 47 70.2
Ca_14923_v3 Cicer arietinum L. HOM05D003657 ORTHO05D004286 1.1e-13 79.0 47 70.2
Migut.G00378 Erythranthe guttata HOM05D003657 ORTHO05D004286 1.1e-13 79.0 47 72.3
Migut.I00319 Erythranthe guttata HOM05D003657 ORTHO05D004286 1.1e-13 79.0 47 72.3
Glyma.08G333800 Glycine max HOM05D003657 ORTHO05D004286 1.1e-13 79.0 47 70.2
Manes.01G163000 Manihot esculenta HOM05D003657 ORTHO05D004286 1.5e-13 78.6 47 68.1
Rhsim01G0235900 Rhododendron simsii HOM05D003657 ORTHO05D004286 1.9e-13 78.2 47 74.5
Actinidia23893 Actinidia chinensis HOM05D003657 ORTHO05D004286 2.5e-13 77.8 47 70.2
Actinidia34451 Actinidia chinensis HOM05D003657 ORTHO05D004286 2.5e-13 77.8 47 70.2
Dinv28627 Davidia involucrata HOM05D003657 ORTHO05D004286 2.5e-13 77.8 47 70.2
Gohir.D03G117100 Gossypium hirsutum HOM05D003657 ORTHO05D004286 2.5e-13 77.8 47 70.2
Gorai.003G123500 Gossypium raimondii HOM05D003657 ORTHO05D004286 2.5e-13 77.8 47 70.2
Hma1.2p1_0863F.1_g229980 Hydrangea macrophylla HOM05D003657 ORTHO05D004286 2.5e-13 77.8 47 70.2
SalBow6G0197 Salvia bowleyana HOM05D003657 ORTHO05D004286 2.5e-13 77.8 47 70.2
unitig_0.g1519 Utricularia gibba HOM05D003657 ORTHO05D004286 2.5e-13 77.8 47 70.2
vmacro02979 Vaccinium macrocarpon HOM05D003657 ORTHO05D004286 2.5e-13 77.8 47 70.2
CAN.G394.117 Capsicum annuum HOM05D003657 ORTHO05D004286 3.3e-13 77.4 47 70.2
ClCG02G019640 Citrullus lanatus HOM05D003657 ORTHO05D004286 3.3e-13 77.4 47 72.3
Cc01_g14050 Coffea canephora HOM05D003657 ORTHO05D004286 3.3e-13 77.4 47 70.2
CsaV3_6G016310 Cucumis sativus L. HOM05D003657 ORTHO05D004286 3.3e-13 77.4 47 72.3
CANSAT54G0812 Cannabis sativa HOM05D003657 ORTHO05D004286 4.3e-13 77.0 47 72.3
Hma1.2p1_0227F.1_g096420 Hydrangea macrophylla HOM05D003657 ORTHO05D004286 4.3e-13 77.0 47 68.1
QL01p037650 Quercus lobata HOM05D003657 ORTHO05D004286 4.3e-13 77.0 47 72.3
CSS0012712 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 5.6e-13 76.6 47 68.1
CSS0013743 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 5.6e-13 76.6 47 68.1
CSS0017673 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 5.6e-13 76.6 47 68.1
CSS0030381 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 5.6e-13 76.6 47 68.1
CSS0035662 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 5.6e-13 76.6 47 68.1
CiPaw.14G060100 Carya illinoinensis HOM05D003657 ORTHO05D004286 5.6e-13 76.6 46 73.9
Lsat_1_v5_gn_9_19501 Lactuca sativa HOM05D003657 ORTHO05D004286 5.6e-13 76.6 47 72.3
Duzib170G0663 Durio zibethinus HOM05D003657 ORTHO05D004286 9.6e-13 75.9 47 66.0
Sed0018588 Sechium edule HOM05D003657 ORTHO05D004286 9.6e-13 75.9 47 70.2
Phvul.006G064300 Phaseolus vulgaris HOM05D003657 ORTHO05D004286 1.3e-12 75.5 47 68.1
A10p05840 Brassica napus HOM05D003657 ORTHO05D004286 1.6e-12 75.1 39 89.7
Gohir.A03G050300 Gossypium hirsutum HOM05D003657 ORTHO05D004286 1.6e-12 75.1 47 68.1
Duzib168G2233 Durio zibethinus HOM05D003657 ORTHO05D004286 2.8e-12 74.3 44 72.7
Prupe.6G059500 Prunus persica HOM05D003657 ORTHO05D004286 3.7e-12 73.9 48 72.9
SEGI_38514 Sequoiadendron giganteum HOM05D003657 ORTHO05D004286 6.2e-12 73.2 47 61.7
SGA_v2.0_scaffold28G11769 Striga asiatica HOM05D003657 ORTHO05D004286 6.2e-12 73.2 47 70.2
BraA10t42845Z Brassica rapa HOM05D003657 ORTHO05D004286 8.1e-12 72.8 44 79.5
Nn4g24153 Nelumbo nucifera HOM05D003657 ORTHO05D004286 1.1e-11 72.4 47 68.1
FvH4_3g38340 Fragaria vesca HOM05D003657 ORTHO05D004286 1.8e-11 71.6 48 72.9
FAN11G3726 Fragaria x ananassa HOM05D003657 ORTHO05D004286 1.8e-11 71.6 48 72.9
FAN16G1802 Fragaria x ananassa HOM05D003657 ORTHO05D004286 1.8e-11 71.6 48 72.9
FAN21G3798 Fragaria x ananassa HOM05D003657 ORTHO05D004286 1.8e-11 71.6 48 72.9
FAN25G3712 Fragaria x ananassa HOM05D003657 ORTHO05D004286 1.8e-11 71.6 48 72.9
RcHm_v2.0_Chr2g0157111 Rosa chinensis HOM05D003657 ORTHO05D004286 1.8e-11 71.6 48 72.9
RcHm_v2.0_Chr4g0399271 Rosa chinensis HOM05D003657 ORTHO05D004286 1.8e-11 71.6 48 72.9
RcHm_v2.0_Chr5g0068951 Rosa chinensis HOM05D003657 ORTHO05D004286 1.8e-11 71.6 48 72.9
MD03G1072700 Malus domestica HOM05D003657 ORTHO05D004286 4.0e-11 70.5 49 69.4
MD11G1078800 Malus domestica HOM05D003657 ORTHO05D004286 4.0e-11 70.5 49 69.4
AagrBONN_evm.TU.Sc2ySwM_228.2818 Anthoceros agrestis HOM05D003657 ORTHO05D004286 1.5e-10 68.6 48 58.3
SEGI_02229 Sequoiadendron giganteum HOM05D003657 ORTHO05D004286 1.5e-10 68.6 45 62.2
Zm00001eb367100 Zea mays HOM05D003657 ORTHO05D004286 2.0e-10 68.2 47 57.4
C04p21110 Brassica napus HOM05D003657 ORTHO05D004286 2.6e-10 67.8 38 81.6
HanXRQChr17g0551341 Helianthus annuus HOM05D003657 ORTHO05D004286 2.6e-10 67.8 47 66.0
Os01g0856000 Oryza sativa ssp. japonica HOM05D003657 ORTHO05D004286 3.4e-10 67.4 47 57.4
Sc12g0000820 Simmondsia chinensis HOM05D003657 ORTHO05D004286 5.8e-10 66.6 47 57.4
A03p26150 Brassica napus HOM05D002033 ORTHO05D002181 7.6e-10 66.2 40 77.5
BraA03t11830Z Brassica rapa HOM05D002033 ORTHO05D002181 7.6e-10 66.2 40 77.5
BcaB01g03143 Brassica carinata HOM05D002033 ORTHO05D002181 1.3e-09 65.5 38 78.9
Pp3c2_14050 Physcomitrium patens HOM05D003657 ORTHO05D004286 1.3e-09 65.5 47 53.2
BcaC01g05004 Brassica carinata HOM05D002033 ORTHO05D002181 1.7e-09 65.1 38 78.9
C03p31210 Brassica napus HOM05D002033 ORTHO05D002181 1.7e-09 65.1 38 78.9
Nitab4.5_0000807g0050 Nicotiana tabacum HOM05D003657 ORTHO05D004286 1.7e-09 65.1 42 69.0
Nitab4.5_0000170g0210 Nicotiana tabacum HOM05D003657 ORTHO05D004286 2.2e-09 64.7 42 66.7
EL10Ac7g16143 Beta vulgaris HOM05D003657 ORTHO05D004286 6.5e-09 63.2 47 59.6
Ah.08g221030 Amaranthus hybridus HOM05D003657 ORTHO05D004286 8.4e-09 62.8 47 59.6
arahy.Tifrunner.gnm1.ann1.RGQY4W Arachis hypogaea HOM05D003657 ORTHO05D004286 8.4e-09 62.8 47 57.4
CBR_g34218 Chara braunii HOM05D003657 ORTHO05D004286 8.4e-09 62.8 47 55.3
Ciclev10030030m.g Citrus clementina HOM05D003657 ORTHO05D004286 1.1e-08 62.4 38 73.7
CBR_g22272 Chara braunii HOM05D003657 ORTHO05D004286 1.9e-08 61.6 47 55.3
SMO137G0247 Selaginella moellendorffii HOM05D003657 ORTHO05D004286 1.9e-08 61.6 48 50.0
arahy.Tifrunner.gnm1.ann1.NA7AU5 Arachis hypogaea HOM05D003657 ORTHO05D004286 2.5e-08 61.2 47 57.4
arahy.Tifrunner.gnm1.ann1.XTS0HX Arachis hypogaea HOM05D003657 ORTHO05D004286 2.5e-08 61.2 47 57.4
MBI15_g31118_MAGBIO Magnolia biondii HOM05D003657 ORTHO05D004286 2.5e-08 61.2 38 68.4
vmacro14588 Vaccinium macrocarpon HOM05D003657 ORTHO05D004286 5.5e-08 60.1 38 68.4
CSS0010761 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 9.3e-08 59.3 38 63.2
CSS0035828 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 9.3e-08 59.3 38 63.2
Nitab4.5_0000010g0240 Nicotiana tabacum HOM05D003657 ORTHO05D004286 9.3e-08 59.3 38 68.4
Nitab4.5_0005502g0010 Nicotiana tabacum HOM05D003657 ORTHO05D004286 9.3e-08 59.3 38 68.4
Peaxi162Scf00540g00620 Petunia axillaris HOM05D003657 ORTHO05D004286 9.3e-08 59.3 48 56.2
TPR.G21184 Trifolium pratense HOM05D003657 ORTHO05D004286 9.3e-08 59.3 38 65.8
Medtr3g463490 Medicago truncatula HOM05D003657 ORTHO05D004286 1.2e-07 58.9 40 62.5
Hund04875 Selenicereus undatus HOM05D003657 ORTHO05D004286 1.2e-07 58.9 47 57.4
Cpa.g.sc112.42 Carica papaya HOM05D003657 ORTHO05D004286 1.6e-07 58.5 38 65.8
HPP92_015512 Vanilla planifolia HOM05D003657 ORTHO05D004286 1.6e-07 58.5 47 55.3
VMungo0540G2171 Vigna mungo HOM05D003657 ORTHO05D004286 2.1e-07 58.2 40 60.0
MELO3C025862.2 Cucumis melo HOM05D003657 ORTHO05D004286 2.7e-07 57.8 38 65.8
Sabra16G0152200 Salix brachista HOM05D003657 ORTHO05D004286 2.7e-07 57.8 38 68.4
Hma1.2p1_3301F.1_g335025 Hydrangea macrophylla HOM05D003657 ORTHO05D004286 4.6e-07 57.0 38 63.2
HanXRQChr14g0433451 Helianthus annuus HOM05D003657 ORTHO05D004286 6.0e-07 56.6 38 63.2
vmacro19103 Vaccinium macrocarpon HOM05D003657 ORTHO05D004286 6.0e-07 56.6 38 65.8
Oeu045526.2 Olea europaea HOM05D003657 ORTHO05D004286 7.9e-07 56.2 38 60.5
MCO07G225 Micromonas commoda HOM05D003657 ORTHO05D004286 3.0e-06 54.3 47 48.9
Zm00001eb147490 Zea mays HOM05D003657 ORTHO05D004286 3.0e-06 54.3 38 55.3
C05p05340 Brassica napus HOM05D003657 ORTHO05D004286 3.9e-06 53.9 43 69.8
Mapoly0042s0007 Marchantia polymorpha HOM05D003657 ORTHO05D004286 8.7e-06 52.8 45 46.7
Thecc.10G071600 Theobroma cacao HOM05D003657 ORTHO05D004286 8.7e-06 52.8 37 62.2


User provided reference genes

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