Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 0.0e+00 1729.9 921 100.0
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1701.8 921 98.4
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 0.0e+00 1696.0 922 98.2
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1675.6 921 97.4
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 0.0e+00 1644.8 921 95.4
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 0.0e+00 1573.9 921 91.3
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 0.0e+00 1555.0 923 90.4
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 0.0e+00 1540.8 923 89.7
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 0.0e+00 1521.1 921 88.5
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1497.3 921 87.5
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 0.0e+00 1490.3 921 87.0
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 0.0e+00 1481.5 944 85.3
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 0.0e+00 1479.2 919 85.2
C08p51140 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1427.9 922 84.2
BolC8t52640H Brassica oleracea HOM05D004564 ORTHO05D006106 0.0e+00 1426.8 934 83.2
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 0.0e+00 1355.1 922 78.6
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 0.0e+00 1162.1 932 67.2
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 0.0e+00 1159.1 921 65.6
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 0.0e+00 1159.1 921 67.9
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 0.0e+00 1158.3 920 66.4
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 0.0e+00 1152.9 928 67.1
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 0.0e+00 1144.4 917 64.7
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 0.0e+00 1140.6 926 63.6
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 0.0e+00 1140.2 921 66.6
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1138.3 921 66.2
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1134.0 921 66.0
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 0.0e+00 1131.3 959 63.6
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 0.0e+00 1130.5 923 63.3
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 0.0e+00 1130.2 996 60.8
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 0.0e+00 1126.7 924 65.4
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 0.0e+00 1125.5 916 65.2
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 0.0e+00 1120.9 922 64.9
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1120.5 922 65.2
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 0.0e+00 1120.5 922 65.4
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 0.0e+00 1119.4 922 63.6
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1115.5 928 64.9
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 0.0e+00 1115.1 924 64.0
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 0.0e+00 1113.2 916 66.0
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 0.0e+00 1111.7 922 65.0
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1111.7 921 64.1
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1110.9 924 63.2
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 0.0e+00 1106.7 928 63.8
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 0.0e+00 1100.1 912 62.8
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 0.0e+00 1092.0 921 62.8
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 0.0e+00 1090.5 934 62.2
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 0.0e+00 1088.6 855 65.7
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 0.0e+00 1087.8 927 60.2
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 0.0e+00 1087.0 915 62.5
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 0.0e+00 1084.3 924 61.8
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1083.9 935 62.2
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 0.0e+00 1077.8 923 61.0
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 0.0e+00 1075.1 914 62.5
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 3.2e-311 1071.6 935 61.6
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 6.2e-310 1067.4 925 60.3
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 1.1e-309 1066.6 932 60.9
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 2.4e-309 1065.4 944 62.4
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 1.2e-308 1063.1 920 61.1
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 1.5e-308 1062.8 914 59.6
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 6.0e-305 1050.8 925 58.9
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 2.5e-303 1045.4 1072 54.9
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 2.4e-301 1038.9 910 59.7
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 1.2e-300 1036.6 962 56.3
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 1.5e-300 1036.2 911 59.4
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 2.0e-300 1035.8 878 62.2
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 7.4e-295 1017.3 914 59.0
HanXRQChr10g0292821 Helianthus annuus HOM05D004564 ORTHO05D006106 4.8e-294 1014.6 909 59.8
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 6.3e-294 1014.2 865 60.9
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 3.1e-293 1011.9 927 59.0
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 1.2e-292 1010.0 1088 52.8
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 3.4e-292 1008.4 875 60.0
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 2.1e-289 999.2 990 57.2
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 2.3e-280 969.1 922 55.5
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 3.3e-279 965.3 926 58.1
CARHR006200 Cardamine hirsuta HOM05D004564 ORTHO05D006106 9.7e-279 963.8 589 90.2
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 8.2e-278 960.7 920 55.5
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 1.8e-272 943.0 906 57.0
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 8.8e-272 940.6 772 64.2
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 4.2e-266 921.8 879 56.0
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 7.2e-266 921.0 927 55.9
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 1.8e-261 906.4 922 52.9
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 2.4e-261 906.0 765 61.3
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 7.0e-261 904.4 865 55.3
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 3.2e-258 895.6 926 54.0
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 1.2e-257 893.6 1011 50.5
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 1.0e-251 874.0 905 53.5
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 2.1e-249 866.3 938 50.9
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 3.4e-247 859.0 722 63.0
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 2.4e-245 852.8 731 64.6
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 3.3e-242 842.4 635 72.6
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 1.2e-241 840.5 1146 43.6
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 2.3e-235 819.7 933 49.9
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 2.6e-231 806.2 732 57.9
Zm00001eb128180 Zea mays HOM05D004564 ORTHO05D006106 2.2e-230 803.1 920 49.1
BcaNung07074 Brassica carinata HOM05D004564 ORTHO05D006106 2.0e-228 796.6 441 98.4
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 5.0e-227 792.0 782 54.6
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 9.2e-221 771.2 647 61.1
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 5.6e-210 735.3 605 62.3
vmacro08736 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 1.2e-183 647.9 530 63.6
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 1.1e-181 641.3 577 57.5
Psat2g017120 Pisum sativum HOM05D004564 ORTHO05D006106 1.5e-162 577.8 424 69.8
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 1.3e-158 564.7 491 60.5
Pp3c3_33140 Physcomitrium patens HOM05D004564 ORTHO05D006106 5.7e-154 549.3 911 38.5
ATR0763G133 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.2e-151 541.6 512 59.0
MBI18_g13604_MAGBIO Magnolia biondii HOM05D004564 ORTHO05D006106 2.4e-144 517.3 917 40.9
FAN02G2671 Fragaria x ananassa HOM05D004564 ORTHO05D006106 3.1e-136 490.3 465 58.3
AagrBONN_evm.TU.Sc2ySwM_228.5505 Anthoceros agrestis HOM05D004564 ORTHO05D006106 9.8e-130 468.8 913 35.6
SMO174G0184 Selaginella moellendorffii HOM05D004564 ORTHO05D006106 3.1e-128 463.8 901 35.4
Hma1.2p1_0539F.1_g174590 Hydrangea macrophylla HOM05D004564 ORTHO05D006106 3.5e-127 460.3 411 58.9
SHI30099 Sapria himalayana HOM05D004564 ORTHO05D006106 4.9e-121 439.9 605 42.8
Mapoly0007s0190 Marchantia polymorpha HOM05D004564 ORTHO05D006106 1.2e-116 425.2 919 33.1
Lalb_Chr10g0106581 Lupinus albus HOM05D004564 ORTHO05D006106 4.1e-112 410.2 296 74.7
vmacro08737 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 1.2e-106 392.1 640 39.7
HPP92_001899 Vanilla planifolia HOM05D004564 ORTHO05D006106 3.0e-94 350.9 681 37.9
arahy.Tifrunner.gnm1.ann1.UKG9X7 Arachis hypogaea HOM05D004564 ORTHO05D006106 1.7e-89 335.1 355 51.3
CBR_g44342 Chara braunii HOM05D000019 ORTHO05D000353 6.0e-87 326.6 567 38.4
GSVIVG01013077001 Vitis vinifera HOM05D004564 ORTHO05D006106 4.5e-82 310.5 238 71.4
CAN.G3149.1 Capsicum annuum HOM05D004564 ORTHO05D006106 6.2e-76 290.0 228 65.8
SEGI_14916 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 9.0e-75 286.2 277 54.9
MD17G1134700 Malus domestica HOM05D004564 ORTHO05D006106 1.1e-69 269.2 284 55.3
Glyma.02G284500 Glycine max HOM05D004564 ORTHO05D006106 6.9e-67 260.0 213 73.7
HPP92_001867 Vanilla planifolia HOM05D004564 ORTHO05D006106 2.2e-65 255.0 602 34.7
TAR626G0359 Trochodendron aralioides HOM05D004564 ORTHO05D006106 8.5e-57 226.5 151 70.2
BcaNung07000 Brassica carinata HOM05D004564 ORTHO05D006106 7.2e-56 223.4 118 100.0
CDE02G3007 Ceratophyllum demersum HOM05D004564 ORTHO05D006106 3.2e-40 171.4 148 60.1
Peaxi162Scf00922g00318 Petunia axillaris HOM05D004564 ORTHO05D006106 1.6e-39 169.1 121 68.6
MD17G1134600 Malus domestica HOM05D004564 ORTHO05D006106 2.1e-39 168.7 271 40.2
TAR626G0994 Trochodendron aralioides HOM05D004564 ORTHO05D006106 6.5e-33 147.1 98 75.5
SHI30097 Sapria himalayana HOM05D004564 ORTHO05D006106 3.3e-29 134.8 227 37.4
ATR0763G243 Amborella trichopoda HOM05D004564 ORTHO05D006106 7.5e-29 133.7 196 36.7
Rhsim02G0232100 Rhododendron simsii HOM05D000252 ORTHO05D000307 2.0e-21 109.0 145 44.8
ATR0820G167 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.4e-19 102.1 120 46.7
ATR0598G245 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.9e-17 95.1 105 47.6
ATR0763G128 Amborella trichopoda HOM05D004564 ORTHO05D006106 6.6e-17 94.0 75 57.3
arahy.Tifrunner.gnm1.ann1.RHC2N4 Arachis hypogaea HOM05D000056 ORTHO05D006106 6.6e-17 94.0 163 35.0
TPR.G10922 Trifolium pratense HOM05D004564 ORTHO05D006106 6.6e-17 94.0 82 63.4
Rhsim12G0011200 Rhododendron simsii HOM05D004564 ORTHO05D000827 5.5e-16 90.9 100 56.0
Lalb_Chr10g0106561 Lupinus albus HOM05D004564 ORTHO05D006106 8.0e-15 87.0 58 65.5
Lj5g0002046 Lotus japonicus HOM05D004564 ORTHO05D000491 1.5e-13 82.8 186 30.6
Phvul.001G172501 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 1.5e-13 82.8 137 35.8
TPR.G35705 Trifolium pratense HOM05D023930 ORTHO05D018030 8.6e-09 67.0 130 39.2
Rhsim12G0011100 Rhododendron simsii HOM05D004564 ORTHO05D006106 1.9e-08 65.9 64 46.9
TPR.G7402 Trifolium pratense HOM05D023930 ORTHO05D006106 2.5e-08 65.5 130 39.2
SEGI_30840 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 4.3e-08 64.7 113 32.7
Zm00001eb370760 Zea mays HOM05D004564 ORTHO05D006106 1.6e-07 62.8 65 50.8
Rhsim12G0011600 Rhododendron simsii HOM05D004564 ORTHO05D000827 2.1e-07 62.4 75 53.3
MCO11G813 Micromonas commoda HOM05D004564 ORTHO05D006106 4.7e-07 61.2 1000 20.6


User provided reference genes

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