Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t29229H Brassica oleracea HOM05D007320 ORTHO05D009290 6.1e-162 574.3 342 100.0
BcaC05g24288 Brassica carinata HOM05D007320 ORTHO05D009290 1.3e-159 566.6 342 99.1
C05p04580 Brassica napus HOM05D007320 ORTHO05D009290 4.1e-158 561.6 342 98.5
A10p04990 Brassica napus HOM05D007320 ORTHO05D009290 4.3e-155 551.6 343 96.8
BraA10t42760Z Brassica rapa HOM05D007320 ORTHO05D009290 4.3e-155 551.6 343 96.8
BcaB02g06809 Brassica carinata HOM05D007320 ORTHO05D009290 9.5e-155 550.4 342 95.6
Thhalv10008110m.g Eutrema salsugineum HOM05D007320 ORTHO05D009290 8.6e-148 527.3 345 91.9
Sp1g05080 Schrenkiella parvula HOM05D007320 ORTHO05D009290 1.2e-146 523.5 345 91.9
CARHR005830 Cardamine hirsuta HOM05D007320 ORTHO05D009290 2.8e-146 522.3 345 91.6
AL1G16280 Arabidopsis lyrata HOM05D007320 ORTHO05D009290 2.3e-145 519.2 345 91.6
AT1G06270 Arabidopsis thaliana HOM05D007320 ORTHO05D009290 3.1e-145 518.8 345 91.3
Carub.0001s0564 Capsella rubella HOM05D007320 ORTHO05D009290 2.0e-144 516.2 345 90.7
Aa31LG1G7290 Aethionema arabicum HOM05D007320 ORTHO05D009290 1.2e-136 490.3 345 83.5
THA.LOC104800856 Tarenaya hassleriana HOM05D007320 ORTHO05D009290 8.1e-114 414.5 342 76.6
Ciclev10017507m.g Citrus clementina HOM05D007320 ORTHO05D009290 9.7e-91 337.8 320 56.6
Atru.chr6.2840 Acer truncatum HOM05D007320 ORTHO05D009290 5.3e-89 332.0 318 55.3
TWI59G0750 Tripterygium wilfordii HOM05D007320 ORTHO05D009290 1.3e-87 327.4 342 52.6
Dinv15897 Davidia involucrata HOM05D007320 ORTHO05D009290 9.4e-86 321.2 318 63.5
Cfa014690 Carpinus fangiana HOM05D007320 ORTHO05D009290 1.2e-85 320.9 338 61.5
Lalb_Chr25g0279081 Lupinus albus HOM05D007320 ORTHO05D009290 2.1e-85 320.1 318 60.1
Hma1.2p1_0002F.1_g002500 Hydrangea macrophylla HOM05D007320 ORTHO05D009290 3.6e-85 319.3 312 63.8
Lj3g0010689 Lotus japonicus HOM05D007320 ORTHO05D009290 7.9e-85 318.2 320 61.6
GSVIVG01020656001 Vitis vinifera HOM05D007320 ORTHO05D009290 1.0e-84 317.8 329 60.2
Prupe.3G125800 Prunus persica HOM05D007320 ORTHO05D009290 1.4e-84 317.4 318 66.0
Actinidia11122 Actinidia chinensis HOM05D007320 ORTHO05D009290 3.9e-84 315.8 325 50.5
Haze_13306 Corylus avellana HOM05D007320 ORTHO05D009290 3.9e-84 315.8 335 60.9
FvH4_7g08410 Fragaria vesca HOM05D007320 ORTHO05D009290 1.1e-83 314.3 318 59.7
FAN10G1335 Fragaria x ananassa HOM05D007320 ORTHO05D009290 1.1e-83 314.3 318 60.1
CANSAT64G2476 Cannabis sativa HOM05D007320 ORTHO05D009290 2.6e-83 313.2 346 59.8
FAN03G0990 Fragaria x ananassa HOM05D007320 ORTHO05D009290 2.6e-83 313.2 316 59.5
FAN10G4046 Fragaria x ananassa HOM05D007320 ORTHO05D009290 4.4e-83 312.4 313 61.0
TAR627G0001 Trochodendron aralioides HOM05D007320 ORTHO05D009290 7.4e-83 311.6 323 63.8
Manes.13G139600 Manihot esculenta HOM05D007320 ORTHO05D009290 9.7e-83 311.2 319 57.1
CiPaw.04G130300 Carya illinoinensis HOM05D007320 ORTHO05D009290 1.3e-82 310.8 329 52.6
Glyma.12G208100 Glycine max HOM05D007320 ORTHO05D009290 1.7e-82 310.5 326 50.0
Rhsim06G0135200 Rhododendron simsii HOM05D007320 ORTHO05D009290 2.8e-82 309.7 320 60.3
Medtr2g090885 Medicago truncatula HOM05D007320 ORTHO05D009290 3.7e-82 309.3 327 59.6
VMungo1080G0443 Vigna mungo HOM05D007320 ORTHO05D009290 3.7e-82 309.3 345 49.3
Ca_01474_v3 Cicer arietinum L. HOM05D007320 ORTHO05D009290 6.3e-82 308.5 327 56.6
MD09G1241100 Malus domestica HOM05D007320 ORTHO05D009290 1.1e-81 307.8 318 61.9
Phvul.005G098950 Phaseolus vulgaris HOM05D007320 ORTHO05D009290 1.1e-81 307.8 326 50.6
Hund07849 Selenicereus undatus HOM05D007320 ORTHO05D009290 2.4e-81 306.6 326 50.6
Sabra13G0103100 Salix brachista HOM05D007320 ORTHO05D009290 5.3e-81 305.4 343 61.2
CSS0012636 Camellia sinensis var. sinensis HOM05D007320 ORTHO05D009290 6.9e-81 305.1 320 60.3
Lj1P690T28 Lonicera japonica HOM05D007320 ORTHO05D009290 9.1e-81 304.7 333 60.7
Cpa.g.sc209.6 Carica papaya HOM05D007320 ORTHO05D009290 1.5e-80 303.9 333 51.4
Psat5g275040 Pisum sativum HOM05D007320 ORTHO05D009290 2.0e-80 303.5 321 59.8
CAN.G756.7 Capsicum annuum HOM05D007320 ORTHO05D009290 3.4e-80 302.8 317 52.1
vmacro12358 Vaccinium macrocarpon HOM05D007320 ORTHO05D009290 3.4e-80 302.8 320 58.1
RcHm_v2.0_Chr0c20g0500221 Rosa chinensis HOM05D007320 ORTHO05D009290 1.3e-79 300.8 313 57.2
Gohir.A05G253000 Gossypium hirsutum HOM05D007320 ORTHO05D009290 2.9e-79 299.7 345 49.6
Gohir.D05G254900 Gossypium hirsutum HOM05D007320 ORTHO05D009290 2.9e-79 299.7 345 49.9
Gorai.009G266400 Gossypium raimondii HOM05D007320 ORTHO05D009290 2.9e-79 299.7 345 49.9
Sopen01g035350 Solanum pennellii HOM05D007320 ORTHO05D009290 6.5e-79 298.5 318 51.6
TPR.G6440 Trifolium pratense HOM05D007320 ORTHO05D009290 8.5e-79 298.1 317 62.8
Solyc01g088490.3 Solanum lycopersicum HOM05D007320 ORTHO05D009290 1.1e-78 297.7 318 51.6
Nitab4.5_0001895g0020 Nicotiana tabacum HOM05D007320 ORTHO05D009290 2.5e-78 296.6 299 52.8
MSTRG.20317 Avicennia marina HOM05D007320 ORTHO05D009290 9.4e-78 294.7 317 49.8
Sc07g0005270 Simmondsia chinensis HOM05D007320 ORTHO05D009290 1.6e-77 293.9 315 63.2
Potri.013G124100 Populus trichocarpa HOM05D007320 ORTHO05D009290 2.7e-77 293.1 331 60.4
PGSC0003DMG400001712 Solanum tuberosum HOM05D007320 ORTHO05D009290 6.1e-77 292.0 318 50.6
Dinv19981 Davidia involucrata HOM05D007320 ORTHO05D009290 1.0e-76 291.2 299 63.5
Thecc.08G174300 Theobroma cacao HOM05D007320 ORTHO05D009290 1.8e-76 290.4 318 61.3
COL.COLO4_26851 Corchorus olitorius HOM05D007320 ORTHO05D009290 1.1e-75 287.7 318 56.0
HanXRQChr17g0565321 Helianthus annuus HOM05D007320 ORTHO05D009290 1.1e-75 287.7 346 45.7
Sed0016711 Sechium edule HOM05D007320 ORTHO05D009290 1.5e-75 287.3 320 58.4
Oeu000571.1 Olea europaea HOM05D007320 ORTHO05D009290 3.3e-75 286.2 318 54.7
Nitab4.5_0008210g0010 Nicotiana tabacum HOM05D007320 ORTHO05D009290 7.4e-75 285.0 298 52.3
Nn3g20750 Nelumbo nucifera HOM05D007320 ORTHO05D009290 1.3e-74 284.3 340 48.5
Eucgr.F01954 Eucalyptus grandis HOM05D007320 ORTHO05D009290 2.2e-74 283.5 320 60.0
ECA234G2345 Erigeron canadensis HOM05D007320 ORTHO05D009290 3.7e-74 282.7 346 46.8
ClCG02G009070 Citrullus lanatus HOM05D007320 ORTHO05D009290 6.3e-74 282.0 326 48.5
AUR62035379 Chenopodium quinoa HOM05D007320 ORTHO05D009290 1.8e-73 280.4 316 59.2
Cc05_g07980 Coffea canephora HOM05D007320 ORTHO05D009290 3.5e-72 276.2 342 45.3
CsaV3_2G004500 Cucumis sativus L. HOM05D007320 ORTHO05D009290 3.5e-72 276.2 318 47.8
Migut.L01118 Erythranthe guttata HOM05D007320 ORTHO05D009290 4.5e-72 275.8 314 48.1
EL10Ac2g02568 Beta vulgaris HOM05D007320 ORTHO05D009290 2.2e-71 273.5 316 57.9
SGA_v2.0_scaffold313G48283 Striga asiatica HOM05D007320 ORTHO05D009290 2.7e-69 266.5 331 43.5
Migut.C00284 Erythranthe guttata HOM05D007320 ORTHO05D009290 6.1e-69 265.4 316 46.5
DCAR_013053 Daucus carota HOM05D007320 ORTHO05D009290 1.8e-68 263.8 340 53.8
MBI06_g25716_MAGBIO Magnolia biondii HOM05D007320 ORTHO05D009290 1.8e-68 263.8 320 48.1
Lsat_1_v5_gn_4_28301 Lactuca sativa HOM05D007320 ORTHO05D009290 1.2e-67 261.2 319 46.4
Migut.D01592 Erythranthe guttata HOM05D007320 ORTHO05D009290 4.4e-67 259.2 317 46.1
SalBow8G5340 Salvia bowleyana HOM05D007320 ORTHO05D009290 4.1e-65 252.7 318 42.8
SalBow8G4737 Salvia bowleyana HOM05D007320 ORTHO05D009290 1.6e-64 250.8 318 42.8
PGR083G2305 Punica granatum HOM05D007320 ORTHO05D009290 7.2e-62 241.9 318 56.3
Peaxi162Scf00745g00038 Petunia axillaris HOM05D007320 ORTHO05D009290 3.6e-61 239.6 317 42.9
unitig_62.g23164 Utricularia gibba HOM05D007320 ORTHO05D009290 2.8e-58 229.9 342 39.8
SHI10502 Sapria himalayana HOM05D007320 ORTHO05D009290 3.7e-58 229.6 319 50.8
TPR.G5736 Trifolium pratense HOM05D007320 ORTHO05D009290 1.6e-56 224.2 268 46.6
AUR62024073 Chenopodium quinoa HOM05D007320 ORTHO05D009290 1.1e-54 218.0 231 65.8
TPR.G34643 Trifolium pratense HOM05D007320 ORTHO05D009290 6.8e-44 182.2 164 56.1
Phvul.005G098533 Phaseolus vulgaris HOM05D007320 ORTHO05D009290 8.9e-44 181.8 167 56.9
MELO3C004341.2 Cucumis melo HOM05D007320 ORTHO05D009290 9.5e-38 161.8 164 50.6
arahy.Tifrunner.gnm1.ann1.CSM94Q Arachis hypogaea HOM05D007320 ORTHO05D009290 1.9e-33 147.5 112 62.5
arahy.Tifrunner.gnm1.ann1.66V1NK Arachis hypogaea HOM05D007320 ORTHO05D009290 8.6e-31 138.7 100 64.0
Cpa.g.sc209.4 Carica papaya HOM05D007320 ORTHO05D009290 8.6e-31 138.7 155 51.0
Sc21g0003340 Simmondsia chinensis HOM05D007320 ORTHO05D009290 2.3e-28 130.6 98 64.3
PGSC0003DMG401001710 Solanum tuberosum HOM05D007320 ORTHO05D009290 8.9e-28 128.6 108 61.1
Sc21g0003330 Simmondsia chinensis HOM05D007320 ORTHO05D009290 6.6e-23 112.5 182 39.6
Dinv15900 Davidia involucrata HOM05D007320 ORTHO05D009290 3.3e-22 110.2 183 55.2
SalBow7G0970 Salvia bowleyana HOM05D000555 ORTHO05D000646 1.3e-15 88.2 97 43.3
arahy.Tifrunner.gnm1.ann1.5PR57S Arachis hypogaea HOM05D007320 ORTHO05D009290 4.3e-14 83.2 119 42.9
MELO3C021360.2 Cucumis melo HOM05D007320 ORTHO05D009290 2.1e-08 64.3 109 40.4
Peaxi162Scf00102g01049 Petunia axillaris HOM05D007320 ORTHO05D009290 9.6e-06 55.5 66 45.5


User provided reference genes

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