Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t29208H Brassica oleracea HOM05D006583 ORTHO05D008134 3.5e-39 164.5 82 100.0
C05p04340 Brassica napus HOM05D006583 ORTHO05D008134 8.7e-38 159.8 83 98.8
Aa31LG1G8200 Aethionema arabicum HOM05D006583 ORTHO05D008134 8.4e-17 90.1 73 60.3
Sp1g04870 Schrenkiella parvula HOM05D006583 ORTHO05D008134 8.4e-17 90.1 73 63.0
Thhalv10008762m.g Eutrema salsugineum HOM05D006583 ORTHO05D008134 3.2e-16 88.2 70 61.4
CARHR005580 Cardamine hirsuta HOM05D006583 ORTHO05D008134 5.5e-16 87.4 70 61.4
AL1G16010 Arabidopsis lyrata HOM05D006583 ORTHO05D008134 7.1e-16 87.0 70 60.0
BcaB03g13442 Brassica carinata HOM05D006583 ORTHO05D008134 1.6e-15 85.9 73 58.9
DCAR_009954 Daucus carota HOM05D006583 ORTHO05D008134 4.6e-15 84.3 71 62.0
TAR376G0698 Trochodendron aralioides HOM05D006583 ORTHO05D008134 1.0e-14 83.2 69 60.9
MBI04_g18961_MAGBIO Magnolia biondii HOM05D006583 ORTHO05D008134 1.3e-14 82.8 69 60.9
C08p02370 Brassica napus HOM05D006583 ORTHO05D008134 1.8e-14 82.4 73 58.9
BolC8t47029H Brassica oleracea HOM05D006583 ORTHO05D008134 1.8e-14 82.4 73 58.9
A08p36140 Brassica napus HOM05D006583 ORTHO05D008134 2.3e-14 82.0 73 57.5
BraA08t35521Z Brassica rapa HOM05D006583 ORTHO05D008134 2.3e-14 82.0 73 57.5
ClCG05G018650 Citrullus lanatus HOM05D001685 ORTHO05D009095 3.0e-14 81.6 75 54.7
Ciclev10002444m.g Citrus clementina HOM05D006583 ORTHO05D008134 3.0e-14 81.6 73 57.5
TAR068G0005 Trochodendron aralioides HOM05D000284 ORTHO05D008134 3.0e-14 81.6 69 62.3
PSO541G0494 Papaver somniferum HOM05D006583 ORTHO05D008134 3.9e-14 81.3 69 62.3
Aqoxy5G01518 Aquilegia oxysepala HOM05D006583 ORTHO05D008134 5.1e-14 80.9 69 60.9
AT1G06060 Arabidopsis thaliana HOM05D006583 ORTHO05D008134 8.7e-14 80.1 70 55.7
FAN15G3353 Fragaria x ananassa HOM05D006583 ORTHO05D008134 8.7e-14 80.1 70 60.0
FAN20G0107 Fragaria x ananassa HOM05D006583 ORTHO05D008134 8.7e-14 80.1 70 60.0
FAN27G2561 Fragaria x ananassa HOM05D001685 ORTHO05D009095 8.7e-14 80.1 70 60.0
PSO675G6535 Papaver somniferum HOM05D006583 ORTHO05D008134 8.7e-14 80.1 69 60.9
RcHm_v2.0_Chr6g0301961 Rosa chinensis HOM05D006583 ORTHO05D008134 8.7e-14 80.1 69 59.4
EL10Ac1g00579 Beta vulgaris HOM05D006583 ORTHO05D008134 1.1e-13 79.7 73 57.5
Dinv31797 Davidia involucrata HOM05D006583 ORTHO05D008134 1.1e-13 79.7 69 59.4
Sed0026661 Sechium edule HOM05D004346 ORTHO05D009095 1.5e-13 79.3 72 55.6
CsaV3_3G045530 Cucumis sativus L. HOM05D006583 ORTHO05D008134 1.9e-13 79.0 72 55.6
CDE06G0069 Ceratophyllum demersum HOM05D006583 ORTHO05D008134 2.5e-13 78.6 69 56.5
Dinv39470 Davidia involucrata HOM05D006583 ORTHO05D008134 2.5e-13 78.6 69 59.4
Phvul.009G013100 Phaseolus vulgaris HOM05D006583 ORTHO05D008134 2.5e-13 78.6 69 58.0
VMungo1309G1713 Vigna mungo HOM05D006583 ORTHO05D008134 2.5e-13 78.6 69 58.0
CSS0045478 Camellia sinensis var. sinensis HOM05D006583 ORTHO05D008134 3.3e-13 78.2 72 55.6
Duzib093G0899 Durio zibethinus HOM05D006583 ORTHO05D008134 3.3e-13 78.2 69 59.4
PGR031G1646 Punica granatum HOM05D006583 ORTHO05D008134 4.3e-13 77.8 69 56.5
vmacro21691 Vaccinium macrocarpon HOM05D006583 ORTHO05D008134 4.3e-13 77.8 69 59.4
Manes.18G019300 Manihot esculenta HOM05D006583 ORTHO05D008134 5.7e-13 77.4 69 58.0
TWI36G1724 Tripterygium wilfordii HOM05D006583 ORTHO05D008134 5.7e-13 77.4 68 58.8
GSVIVG01009797001 Vitis vinifera HOM05D006583 ORTHO05D008134 5.7e-13 77.4 69 58.0
COL.COLO4_26225 Corchorus olitorius HOM05D006583 ORTHO05D008134 7.4e-13 77.0 69 58.0
FvH4_2g38860 Fragaria vesca HOM05D006583 ORTHO05D008134 7.4e-13 77.0 69 58.0
Glyma.04G028200 Glycine max HOM05D006583 ORTHO05D008134 9.6e-13 76.6 69 56.5
Glyma.06G028400 Glycine max HOM05D006583 ORTHO05D008134 9.6e-13 76.6 69 56.5
THA.LOC104798636 Tarenaya hassleriana HOM05D006583 ORTHO05D008134 9.6e-13 76.6 69 56.5
Atru.chr13.382 Acer truncatum HOM05D001685 ORTHO05D009095 1.3e-12 76.3 73 53.4
Gohir.A01G113700 Gossypium hirsutum HOM05D006583 ORTHO05D008134 1.3e-12 76.3 69 58.0
Gohir.D01G101500 Gossypium hirsutum HOM05D006583 ORTHO05D008134 1.3e-12 76.3 69 58.0
Gorai.002G126000 Gossypium raimondii HOM05D006583 ORTHO05D008134 1.3e-12 76.3 69 58.0
MD08G1023000 Malus domestica HOM05D006583 ORTHO05D008134 1.3e-12 76.3 69 58.0
Prupe.1G372300 Prunus persica HOM05D006583 ORTHO05D008134 1.3e-12 76.3 69 58.0
Rhsim06G0027600 Rhododendron simsii HOM05D006583 ORTHO05D008134 1.3e-12 76.3 69 56.5
Thecc.08G035300 Theobroma cacao HOM05D006583 ORTHO05D008134 1.3e-12 76.3 69 59.4
arahy.Tifrunner.gnm1.ann1.F32EHA Arachis hypogaea HOM05D006583 ORTHO05D008134 1.6e-12 75.9 69 53.6
arahy.Tifrunner.gnm1.ann1.IRD816 Arachis hypogaea HOM05D006583 ORTHO05D008134 1.6e-12 75.9 69 53.6
Hma1.2p1_0469F.1_g158810 Hydrangea macrophylla HOM05D006583 ORTHO05D008134 2.1e-12 75.5 69 58.0
Os01g0775600 Oryza sativa ssp. japonica HOM05D006583 ORTHO05D008134 2.1e-12 75.5 70 55.7
Actinidia15372 Actinidia chinensis HOM05D006583 ORTHO05D008134 2.8e-12 75.1 69 56.5
Duzib041G0648 Durio zibethinus HOM05D006583 ORTHO05D008134 2.8e-12 75.1 69 56.5
Ah.02g110970 Amaranthus hybridus HOM05D006583 ORTHO05D008134 3.7e-12 74.7 73 53.4
Carub.0001s0539 Capsella rubella HOM05D006583 ORTHO05D008134 3.7e-12 74.7 70 54.3
Lalb_Chr11g0062151 Lupinus albus HOM05D006583 ORTHO05D008134 3.7e-12 74.7 69 56.5
PGSC0003DMG401003705 Solanum tuberosum HOM05D006583 ORTHO05D008134 6.2e-12 73.9 71 56.3
ECA246G3248 Erigeron canadensis HOM05D006583 ORTHO05D008134 8.2e-12 73.6 73 54.8
Lj4A32T64 Lonicera japonica HOM05D006583 ORTHO05D008134 8.2e-12 73.6 69 58.0
Sc02g0005320 Simmondsia chinensis HOM05D006583 ORTHO05D008134 8.2e-12 73.6 71 52.1
TWI56G0908 Tripterygium wilfordii HOM05D006583 ORTHO05D008134 8.2e-12 73.6 68 57.4
Potri.002G029700 Populus trichocarpa HOM05D006583 ORTHO05D008134 1.1e-11 73.2 69 55.1
Sabra02G0023600 Salix brachista HOM05D001685 ORTHO05D008134 1.4e-11 72.8 69 55.1
CDE07G0605 Ceratophyllum demersum HOM05D006583 ORTHO05D008134 1.8e-11 72.4 72 48.6
MELO3C003787.2 Cucumis melo HOM05D006583 ORTHO05D008134 1.8e-11 72.4 72 52.8
Potri.005G233000 Populus trichocarpa HOM05D006583 ORTHO05D008134 1.8e-11 72.4 70 55.7
CAN.G851.29 Capsicum annuum HOM05D006583 ORTHO05D008134 2.4e-11 72.0 71 54.9
Solyc04g080900.3 Solanum lycopersicum HOM05D001685 ORTHO05D009095 2.4e-11 72.0 71 53.5
Sopen04g034500 Solanum pennellii HOM05D006583 ORTHO05D008134 2.4e-11 72.0 71 53.5
HPP92_015882 Vanilla planifolia HOM05D006583 ORTHO05D008134 5.3e-11 70.9 70 52.9
Cc10_g02290 Coffea canephora HOM05D006583 ORTHO05D008134 1.2e-10 69.7 69 52.2
Hund26881 Selenicereus undatus HOM05D006583 ORTHO05D008134 1.2e-10 69.7 69 52.2
AUR62034544 Chenopodium quinoa HOM05D006583 ORTHO05D008134 1.5e-10 69.3 70 48.6
CiPaw.07G155600 Carya illinoinensis HOM05D006583 ORTHO05D008134 2.0e-10 68.9 69 53.6
MSTRG.1241 Avicennia marina HOM05D006583 ORTHO05D008134 2.6e-10 68.6 69 52.2
CANSAT25G2309 Cannabis sativa HOM05D006583 ORTHO05D008134 2.6e-10 68.6 73 49.3
Ca_13385_v3 Cicer arietinum L. HOM05D006583 ORTHO05D008134 2.6e-10 68.6 69 53.6
TPR.G13692 Trifolium pratense HOM05D006583 ORTHO05D008134 2.6e-10 68.6 69 55.1
Eucgr.F01851 Eucalyptus grandis HOM05D006583 ORTHO05D008134 3.4e-10 68.2 68 52.9
MD15G1020700 Malus domestica HOM05D006583 ORTHO05D008134 3.4e-10 68.2 69 52.2
Lalb_Chr23g0266401 Lupinus albus HOM05D006583 ORTHO05D008134 4.5e-10 67.8 69 52.2
Peaxi162Scf00189g00133 Petunia axillaris HOM05D001685 ORTHO05D009095 4.5e-10 67.8 72 51.4
Lj5g0011733 Lotus japonicus HOM05D006583 ORTHO05D008134 5.8e-10 67.4 69 50.7
Psat6g006360 Pisum sativum HOM05D006583 ORTHO05D008134 5.8e-10 67.4 69 52.2
Sabra05G0179700 Salix brachista HOM05D006583 ORTHO05D008134 5.8e-10 67.4 68 52.9
CAN.G187.2 Capsicum annuum HOM05D006583 ORTHO05D008134 7.6e-10 67.0 81 46.9
AUR62014454 Chenopodium quinoa HOM05D006583 ORTHO05D008134 7.6e-10 67.0 70 47.1
Medtr1g019870 Medicago truncatula HOM05D006583 ORTHO05D008134 1.3e-09 66.2 70 52.9
Haze_22568 Corylus avellana HOM05D006583 ORTHO05D008134 3.8e-09 64.7 69 50.7
Migut.C00777 Erythranthe guttata HOM05D001685 ORTHO05D009095 3.8e-09 64.7 72 48.6
ATR0665G303 Amborella trichopoda HOM05D006583 ORTHO05D008134 5.0e-09 64.3 69 49.3
HanXRQChr03g0069701 Helianthus annuus HOM05D006583 ORTHO05D008134 6.5e-09 63.9 69 49.3
QL02p010374 Quercus lobata HOM05D006583 ORTHO05D008134 1.1e-08 63.2 72 50.0
QL02p010412 Quercus lobata HOM05D006583 ORTHO05D008134 1.1e-08 63.2 72 50.0
SEGI_23693 Sequoiadendron giganteum HOM05D006583 ORTHO05D008134 1.1e-08 63.2 69 49.3
SEGI_39793 Sequoiadendron giganteum HOM05D006583 ORTHO05D008134 1.1e-08 63.2 69 49.3
HanXRQChr05g0149481 Helianthus annuus HOM05D006583 ORTHO05D008134 1.4e-08 62.8 69 49.3
Nitab4.5_0002156g0120 Nicotiana tabacum HOM05D006583 ORTHO05D008134 1.4e-08 62.8 63 50.8
Nitab4.5_0001840g0010 Nicotiana tabacum HOM05D006583 ORTHO05D008134 5.5e-08 60.8 67 52.2
SGA_v2.0_scaffold201G41378 Striga asiatica HOM05D006583 ORTHO05D008134 7.1e-08 60.5 69 44.9
Glyma.17G254300 Glycine max HOM05D006583 ORTHO05D008134 1.6e-07 59.3 70 50.0
Glyma.14G070300 Glycine max HOM05D006583 ORTHO05D008134 2.7e-07 58.5 70 48.6
Pp3c9_8180 Physcomitrium patens HOM05D006583 ORTHO05D008134 3.5e-07 58.2 71 49.3
SalBow7G0241 Salvia bowleyana HOM05D006583 ORTHO05D008134 4.6e-07 57.8 69 46.4
Pp3c15_18970 Physcomitrium patens HOM05D006583 ORTHO05D008134 7.9e-07 57.0 71 47.9
SGA_v2.0_scaffold11G05841 Striga asiatica HOM05D006583 ORTHO05D008134 1.8e-06 55.8 71 38.0
SGA_v2.0_scaffold11G05849 Striga asiatica HOM05D006583 ORTHO05D008134 5.1e-06 54.3 69 43.5
Phvul.001G010600 Phaseolus vulgaris HOM05D006583 ORTHO05D008134 8.7e-06 53.5 73 42.5


User provided reference genes

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