Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 1.4e-36 156.0 89 100.0
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 5.9e-32 140.6 86 90.7
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 5.9e-32 140.6 86 90.7
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 2.3e-28 128.6 90 86.7
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 5.2e-28 127.5 83 90.4
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 1.3e-26 122.9 83 83.1
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 1.4e-25 119.4 88 78.4
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 5.0e-23 110.9 86 75.6
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 5.0e-23 110.9 86 75.6
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 6.8e-20 100.5 79 75.9
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 5.7e-19 97.4 83 71.1
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 2.8e-18 95.1 73 72.6
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 3.7e-18 94.7 85 69.4
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 3.7e-18 94.7 85 69.4
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 4.8e-18 94.4 85 68.2
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 4.8e-18 94.4 85 68.2
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 4.8e-18 94.4 85 68.2
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 1.4e-17 92.8 86 65.1
A10p04340 Brassica napus HOM05D000875 ORTHO05D000684 4.1e-17 91.3 60 86.7
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 9.1e-17 90.1 73 69.9
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 2.7e-16 88.6 73 68.5
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 2.7e-16 88.6 84 59.5
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 5.9e-16 87.4 73 67.1
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 2.9e-15 85.1 84 56.0
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 6.6e-15 84.0 73 65.8
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 6.6e-15 84.0 84 56.0
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.1e-14 83.2 66 71.2
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 1.9e-14 82.4 84 57.1
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 2.5e-14 82.0 73 68.5
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 7.2e-14 80.5 73 63.0
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 9.5e-14 80.1 78 60.3
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 1.2e-13 79.7 78 60.3
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 6.1e-13 77.4 73 61.6
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 6.1e-13 77.4 76 67.1
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 6.1e-13 77.4 88 55.7
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 1.0e-12 76.6 76 63.2
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.4e-12 76.3 87 56.3
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 2.3e-12 75.5 76 59.2
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 3.0e-12 75.1 66 65.2
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 3.0e-12 75.1 72 61.1
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 4.0e-12 74.7 84 57.1
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 4.0e-12 74.7 89 57.3
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 4.0e-12 74.7 78 57.7
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 5.2e-12 74.3 76 60.5
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 6.8e-12 73.9 75 58.7
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 6.8e-12 73.9 83 60.2
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 8.9e-12 73.6 73 60.3
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 8.9e-12 73.6 78 56.4
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 8.9e-12 73.6 83 55.4
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 8.9e-12 73.6 81 56.8
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.2e-11 73.2 71 63.4
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.2e-11 73.2 71 63.4
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 1.5e-11 72.8 65 63.1
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 1.5e-11 72.8 79 60.8
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 1.5e-11 72.8 84 56.0
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 1.5e-11 72.8 70 58.6
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 2.0e-11 72.4 81 55.6
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 2.6e-11 72.0 78 55.1
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 3.4e-11 71.6 84 56.0
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 3.4e-11 71.6 72 59.7
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 3.4e-11 71.6 75 57.3
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 5.7e-11 70.9 72 58.3
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 5.7e-11 70.9 74 58.1
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 7.5e-11 70.5 63 63.5
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 7.5e-11 70.5 83 54.2
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 9.8e-11 70.1 76 57.9
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 9.8e-11 70.1 75 54.7
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 1.3e-10 69.7 73 58.9
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 1.3e-10 69.7 76 56.6
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 1.7e-10 69.3 81 53.1
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 1.7e-10 69.3 81 53.1
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 1.7e-10 69.3 73 54.8
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 1.7e-10 69.3 78 56.4
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 2.2e-10 68.9 71 57.7
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 2.2e-10 68.9 70 54.3
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 2.8e-10 68.6 79 53.2
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 3.7e-10 68.2 71 59.2
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 3.7e-10 68.2 72 58.3
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 3.7e-10 68.2 73 54.8
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 4.9e-10 67.8 72 59.7
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 4.9e-10 67.8 78 56.4
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 1.1e-09 66.6 81 50.6
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.1e-09 66.6 71 59.2
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 1.1e-09 66.6 74 54.1
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 1.1e-09 66.6 75 50.7
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 1.4e-09 66.2 83 51.8
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 1.4e-09 66.2 84 54.8
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 1.4e-09 66.2 73 53.4
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 2.4e-09 65.5 72 55.6
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 3.1e-09 65.1 69 56.5
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 4.1e-09 64.7 73 60.3
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 4.1e-09 64.7 80 57.5
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 5.4e-09 64.3 77 57.1
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 5.4e-09 64.3 73 54.8
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 5.4e-09 64.3 73 54.8
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 7.0e-09 63.9 68 54.4
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 7.0e-09 63.9 56 67.9
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 7.0e-09 63.9 72 54.2
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 9.2e-09 63.5 81 50.6
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 9.2e-09 63.5 70 55.7
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 9.2e-09 63.5 73 53.4
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 1.2e-08 63.2 64 59.4
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 1.6e-08 62.8 63 55.6
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 2.0e-08 62.4 80 55.0
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 2.7e-08 62.0 72 54.2
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 2.7e-08 62.0 80 56.2
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 2.7e-08 62.0 82 50.0
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 4.5e-08 61.2 64 54.7
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 4.5e-08 61.2 72 52.8
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 4.5e-08 61.2 73 50.7
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 5.9e-08 60.8 76 52.6
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 5.9e-08 60.8 72 50.0
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 5.9e-08 60.8 82 52.4
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 7.8e-08 60.5 74 55.4
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.0e-07 60.1 77 58.4
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 1.3e-07 59.7 73 52.1
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 1.3e-07 59.7 63 55.6
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 1.3e-07 59.7 88 48.9
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 1.7e-07 59.3 81 49.4
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 2.3e-07 58.9 64 56.2
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 2.3e-07 58.9 58 60.3
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 2.3e-07 58.9 71 54.9
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 2.3e-07 58.9 88 48.9
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 2.9e-07 58.5 80 48.8
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 2.9e-07 58.5 78 52.6
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 2.9e-07 58.5 78 52.6
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 3.9e-07 58.2 80 52.5
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 6.6e-07 57.4 65 55.4
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 6.6e-07 57.4 74 52.7
HPP92_023476 Vanilla planifolia HOM05D004722 ORTHO05D005453 6.6e-07 57.4 78 47.4
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 8.6e-07 57.0 83 55.4
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 8.6e-07 57.0 69 55.1
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 1.1e-06 56.6 77 50.6
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 1.5e-06 56.2 53 62.3
FvH4_3g44500 Fragaria vesca HOM05D004722 ORTHO05D005453 1.5e-06 56.2 63 54.0
FAN11G3093 Fragaria x ananassa HOM05D004722 ORTHO05D005453 1.5e-06 56.2 63 54.0
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 1.5e-06 56.2 69 53.6
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 1.5e-06 56.2 70 48.6
Cpa.g.sc119.96 Carica papaya HOM05D004722 ORTHO05D005453 1.9e-06 55.8 64 57.8
HPP92_023456 Vanilla planifolia HOM05D004722 ORTHO05D005453 1.9e-06 55.8 78 46.2
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 2.5e-06 55.5 85 45.9
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 4.3e-06 54.7 79 49.4
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 5.6e-06 54.3 80 47.5
Ah.06g190970 Amaranthus hybridus HOM05D004722 ORTHO05D005453 9.5e-06 53.5 63 50.8
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 9.5e-06 53.5 65 47.7


User provided reference genes

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