Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 0.0e+00 1127.1 686 100.0
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 0.0e+00 1107.8 686 93.9
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 0.0e+00 1100.5 686 98.1
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 4.7e-286 987.6 687 90.4
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 2.0e-281 972.2 697 89.1
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 1.5e-223 780.0 711 77.1
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 1.1e-199 700.7 696 68.1
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 1.5e-199 700.3 693 68.7
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 2.5e-199 699.5 709 65.3
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 9.6e-199 697.6 696 68.0
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 1.5e-196 690.3 711 67.9
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 4.5e-196 688.7 714 62.6
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 3.2e-186 656.0 732 66.5
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 1.0e-184 651.0 882 57.3
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 2.2e-171 606.7 967 52.5
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 1.8e-157 560.5 558 58.8
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 8.6e-155 551.6 707 61.2
AT4G20720 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 6.3e-150 535.4 644 60.4
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 1.7e-123 447.6 753 48.6
AT1G05090 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 7.3e-122 442.2 355 69.0
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 2.2e-81 307.8 236 69.5
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 3.3e-50 204.1 716 27.9
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 2.2e-49 201.4 718 27.7
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 8.2e-49 199.5 703 28.9
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 3.1e-48 197.6 717 28.7
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 5.3e-48 196.8 698 29.2
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 1.9e-45 188.3 753 28.6
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 1.2e-44 185.7 713 27.3
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 1.2e-44 185.7 752 28.1
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 3.6e-44 184.1 696 26.6
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 4.7e-44 183.7 718 29.5
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 4.7e-44 183.7 702 28.6
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 1.4e-43 182.2 712 37.9
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 1.2e-42 179.1 763 27.4
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 2.6e-42 177.9 699 27.8
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 2.6e-42 177.9 595 29.2
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 2.6e-42 177.9 746 27.7
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 5.7e-42 176.8 700 27.6
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 2.8e-41 174.5 518 29.3
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 6.3e-41 173.3 720 28.3
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 8.3e-41 172.9 756 25.9
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 3.1e-40 171.0 708 36.3
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 7.0e-40 169.9 766 27.0
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 7.0e-40 169.9 748 27.5
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 2.0e-39 168.3 769 27.0
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 2.7e-39 167.9 553 29.1
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 3.5e-39 167.5 729 27.6
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 7.7e-39 166.4 693 25.1
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 1.0e-38 166.0 523 28.1
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 5.0e-38 163.7 708 34.9
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 3.3e-37 161.0 711 35.4
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 9.5e-37 159.5 709 35.1
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 9.5e-37 159.5 751 26.0
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 2.8e-36 157.9 601 29.0
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 2.8e-36 157.9 710 35.5
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 2.8e-36 157.9 700 25.9
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 4.7e-36 157.1 589 27.8
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 6.1e-36 156.8 217 40.6
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 6.1e-36 156.8 763 25.3
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 8.0e-36 156.4 700 26.0
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 1.8e-35 155.2 742 28.0
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 4.0e-35 154.1 723 25.7
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 4.0e-35 154.1 704 25.6
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 6.8e-35 153.3 237 39.7
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 1.2e-34 152.5 236 37.7
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 1.2e-34 152.5 728 26.5
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 1.5e-34 152.1 236 37.7
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 3.4e-34 151.0 828 26.7
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 5.7e-34 150.2 235 37.9
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 1.3e-33 149.1 581 29.6
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 1.7e-33 148.7 719 25.5
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 1.8e-32 145.2 688 24.1
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 1.6e-31 142.1 518 25.9
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 4.5e-31 140.6 781 24.7
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 5.9e-31 140.2 726 24.9
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 1.7e-30 138.7 491 27.7
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 6.6e-30 136.7 813 29.8
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 8.6e-30 136.3 717 25.2
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 3.3e-29 134.4 702 26.9
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 5.6e-29 133.7 781 25.2
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 8.0e-28 129.8 736 26.6
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 1.8e-27 128.6 777 23.4
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 5.2e-27 127.1 712 23.9
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 6.8e-27 126.7 716 23.9
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 6.8e-27 126.7 714 24.2
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 1.5e-26 125.6 515 28.5
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 1.5e-26 125.6 704 23.7
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 7.5e-26 123.2 198 36.9
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 1.3e-25 122.5 177 36.7
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 2.9e-25 121.3 236 36.0
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 3.7e-25 120.9 751 23.4
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 3.7e-25 120.9 731 24.9
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 6.4e-25 120.2 586 25.4
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 3.2e-24 117.9 231 36.8
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 7.0e-24 116.7 232 37.9
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 1.6e-23 115.5 749 23.9
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 4.6e-23 114.0 773 23.9
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 6.0e-23 113.6 179 37.4
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 3.0e-22 111.3 110 50.9
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 3.9e-22 110.9 184 37.5
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 1.1e-21 109.4 185 37.3
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 1.5e-21 109.0 148 40.5
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 5.6e-21 107.1 533 38.6
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 3.6e-20 104.4 681 24.4
Ah.03g136860 Amaranthus hybridus HOM05D005385 ORTHO05D006768 4.7e-20 104.0 256 32.4
SGA_v2.0_scaffold49G18342 Striga asiatica HOM05D005385 ORTHO05D006768 4.0e-19 100.9 181 35.9
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 8.9e-19 99.8 222 34.2
AUR62043283 Chenopodium quinoa HOM05D005385 ORTHO05D006768 1.5e-18 99.0 238 32.8
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 2.6e-18 98.2 710 24.1
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 3.4e-18 97.8 341 29.9
BcaC07g36863 Brassica carinata HOM05D005385 ORTHO05D006768 4.4e-18 97.4 75 70.7
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 3.7e-17 94.4 145 45.5
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 9.2e-16 89.7 252 28.6
AUR62043954 Chenopodium quinoa HOM05D005385 ORTHO05D006768 1.6e-15 89.0 223 33.2
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 6.0e-15 87.0 204 31.9
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 6.0e-15 87.0 245 29.8
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 3.9e-14 84.3 205 28.8
BcaB04g19303 Brassica carinata HOM05D005385 ORTHO05D006768 1.8e-11 75.5 53 69.8
Duzib133G0609 Durio zibethinus HOM05D005385 ORTHO05D006768 5.2e-11 73.9 205 33.2
BcaB04g17601 Brassica carinata HOM05D005385 ORTHO05D039913 4.4e-10 70.9 45 75.6
VMungo0251G0036 Vigna mungo HOM05D005385 ORTHO05D006768 1.7e-09 68.9 303 28.7
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 3.7e-09 67.8 104 37.5
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 3.7e-09 67.8 206 34.5
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 3.7e-09 67.8 206 34.5
DCAR_021158 Daucus carota HOM05D005385 ORTHO05D006768 1.4e-08 65.9 170 34.1
HPP92_018560 Vanilla planifolia HOM05D005385 ORTHO05D006768 2.7e-07 61.6 96 38.5
Lj3P615T7 Lonicera japonica HOM05D005385 ORTHO05D006768 3.5e-07 61.2 108 41.7
BcaB05g22977 Brassica carinata HOM05D005385 ORTHO05D006768 1.0e-06 59.7 105 40.0
CSS0039058 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 1.3e-06 59.3 71 50.7
C02p46800 Brassica napus HOM05D005385 ORTHO05D039913 3.0e-06 58.2 40 72.5
MD17G1100100 Malus domestica HOM05D005385 ORTHO05D006768 3.9e-06 57.8 234 27.4
SEGI_06248 Sequoiadendron giganteum HOM05D005385 ORTHO05D004652 8.6e-06 56.6 129 31.0


User provided reference genes

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