Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t29054H Brassica oleracea HOM05D006603 ORTHO05D007786 3.4e-69 265.0 148 100.0
BraA10t42567Z Brassica rapa HOM05D006603 ORTHO05D007786 4.7e-66 254.6 149 95.3
Carub.0001s0377 Capsella rubella HOM05D006603 ORTHO05D007786 1.8e-57 226.1 149 84.6
AL1G14230 Arabidopsis lyrata HOM05D006603 ORTHO05D007786 4.1e-54 214.9 155 79.4
BcaNung06560 Brassica carinata HOM05D006603 ORTHO05D007786 4.1e-54 214.9 156 78.8
AT1G04555 Arabidopsis thaliana HOM05D006603 ORTHO05D007786 1.2e-53 213.4 156 78.2
Thhalv10009014m.g Eutrema salsugineum HOM05D006603 ORTHO05D007786 1.2e-53 213.4 154 81.2
Sp1g03390 Schrenkiella parvula HOM05D006603 ORTHO05D007786 3.5e-53 211.8 161 76.4
CARHR003900 Cardamine hirsuta HOM05D006603 ORTHO05D007786 3.0e-49 198.7 138 79.7
C05p02730 Brassica napus HOM05D001210 ORTHO05D001036 1.2e-48 196.8 109 99.1
Aa31LG1G20320 Aethionema arabicum HOM05D006603 ORTHO05D007786 1.0e-44 183.7 152 71.7
THA.LOC104816009 Tarenaya hassleriana HOM05D006603 ORTHO05D007786 2.9e-44 182.2 141 74.5
BolC8t46928H Brassica oleracea HOM05D006603 ORTHO05D007786 5.0e-44 181.4 155 71.6
BolC8t46924H Brassica oleracea HOM05D006603 ORTHO05D007786 1.9e-43 179.5 155 71.0
BolC8t46925H Brassica oleracea HOM05D006603 ORTHO05D007786 5.5e-43 177.9 147 72.8
BolC8t46922H Brassica oleracea HOM05D006603 ORTHO05D007786 9.5e-43 177.2 155 70.3
BcaC07g36903 Brassica carinata HOM05D006603 ORTHO05D007786 2.8e-42 175.6 144 73.6
A08p36880 Brassica napus HOM05D006603 ORTHO05D007786 2.8e-42 175.6 155 69.7
Manes.03G157300 Manihot esculenta HOM05D006603 ORTHO05D007786 7.5e-40 167.5 143 68.5
CsaV3_2G012360 Cucumis sativus L. HOM05D006603 ORTHO05D007786 9.8e-40 167.2 141 68.8
FvH4_4g05040 Fragaria vesca HOM05D006603 ORTHO05D007786 1.7e-39 166.4 139 68.3
FAN12G4195 Fragaria x ananassa HOM05D006603 ORTHO05D007786 1.7e-39 166.4 139 68.3
Thecc.04G267600 Theobroma cacao HOM05D006603 ORTHO05D007786 1.7e-39 166.4 141 67.4
MELO3C023048.2 Cucumis melo HOM05D006603 ORTHO05D007786 4.9e-39 164.9 141 67.4
TWI73G0993 Tripterygium wilfordii HOM05D006603 ORTHO05D007786 6.3e-39 164.5 141 68.1
BolC8t52747H Brassica oleracea HOM05D000117 ORTHO05D007786 8.3e-39 164.1 134 74.6
Gohir.A09G230800 Gossypium hirsutum HOM05D006603 ORTHO05D007786 8.3e-39 164.1 139 67.6
Gohir.D09G231900 Gossypium hirsutum HOM05D006603 ORTHO05D007786 8.3e-39 164.1 139 67.6
CiPaw.01G176600 Carya illinoinensis HOM05D006603 ORTHO05D007786 1.4e-38 163.3 141 66.7
Medtr1g045660 Medicago truncatula HOM05D006603 ORTHO05D007786 3.1e-38 162.2 142 65.5
FAN22G1779 Fragaria x ananassa HOM05D006603 ORTHO05D007786 9.2e-38 160.6 139 66.9
Ciclev10006126m.g Citrus clementina HOM05D006603 ORTHO05D007786 2.7e-37 159.1 144 62.5
CANSAT78G1588 Cannabis sativa HOM05D006603 ORTHO05D007786 5.9e-37 157.9 143 64.3
Potri.010G064500 Populus trichocarpa HOM05D006603 ORTHO05D007786 7.8e-37 157.5 142 64.8
RcHm_v2.0_Chr4g0395941 Rosa chinensis HOM05D006603 ORTHO05D007786 1.0e-36 157.1 134 67.9
Ca_25848_v3 Cicer arietinum L. HOM05D006603 ORTHO05D007786 5.0e-36 154.8 143 63.6
Glyma.20G082000 Glycine max HOM05D006603 ORTHO05D007786 5.0e-36 154.8 141 63.1
Duzib151G0118 Durio zibethinus HOM05D006603 ORTHO05D007786 6.6e-36 154.5 137 66.4
Psat6g018400 Pisum sativum HOM05D006603 ORTHO05D007786 1.1e-35 153.7 141 63.1
Lalb_Chr03g0036931 Lupinus albus HOM05D006603 ORTHO05D007786 1.5e-35 153.3 141 62.4
TWI09G1292 Tripterygium wilfordii HOM05D006603 ORTHO05D007786 1.5e-35 153.3 141 65.2
MBI10_g39247_MAGBIO Magnolia biondii HOM05D006603 ORTHO05D007786 3.3e-35 152.1 143 61.5
Duzib212G0187 Durio zibethinus HOM05D006603 ORTHO05D007786 4.3e-35 151.8 137 65.0
TPR.G23967 Trifolium pratense HOM05D006603 ORTHO05D007786 4.3e-35 151.8 141 62.4
Potri.008G173000 Populus trichocarpa HOM05D006603 ORTHO05D007786 5.6e-35 151.4 140 60.7
Lj6g0018890 Lotus japonicus HOM05D006603 ORTHO05D007786 1.2e-34 150.2 141 61.7
Phvul.007G231900 Phaseolus vulgaris HOM05D006603 ORTHO05D007786 1.6e-34 149.8 142 62.0
EL10Ac3g06681 Beta vulgaris HOM05D006603 ORTHO05D007786 2.1e-34 149.4 141 63.1
TAR633G2131 Trochodendron aralioides HOM05D006603 ORTHO05D007786 2.1e-34 149.4 135 62.2
Manes.15G046500 Manihot esculenta HOM05D006603 ORTHO05D007786 2.8e-34 149.1 132 66.7
Dinv29792 Davidia involucrata HOM05D006603 ORTHO05D007786 6.1e-34 147.9 142 62.0
Sc25g0004840 Simmondsia chinensis HOM05D006603 ORTHO05D007786 1.4e-33 146.7 131 61.8
CSS0001604 Camellia sinensis var. sinensis HOM05D006603 ORTHO05D007786 1.8e-33 146.4 140 59.3
BcaB03g13488 Brassica carinata HOM05D006603 ORTHO05D007786 2.3e-33 146.0 131 66.4
MD13G1223900 Malus domestica HOM05D006603 ORTHO05D007786 2.3e-33 146.0 141 60.3
Actinidia11378 Actinidia chinensis HOM05D006603 ORTHO05D007786 1.2e-32 143.7 146 57.5
Actinidia39936 Actinidia chinensis HOM05D006603 ORTHO05D007786 1.2e-32 143.7 146 56.8
Nitab4.5_0005154g0030 Nicotiana tabacum HOM05D006603 ORTHO05D007786 2.0e-32 142.9 132 59.8
arahy.Tifrunner.gnm1.ann1.GIKJ41 Arachis hypogaea HOM05D006603 ORTHO05D007786 2.6e-32 142.5 167 55.1
arahy.Tifrunner.gnm1.ann1.T2GGRX Arachis hypogaea HOM05D006603 ORTHO05D007786 4.4e-32 141.7 167 55.1
MD16G1228700 Malus domestica HOM05D006603 ORTHO05D007786 9.8e-32 140.6 141 59.6
Peaxi162Scf00531g00210 Petunia axillaris HOM05D006603 ORTHO05D007786 1.7e-31 139.8 135 60.7
GSVIVG01027941001 Vitis vinifera HOM05D006603 ORTHO05D007786 2.9e-31 139.0 135 62.2
Eucgr.H02902 Eucalyptus grandis HOM05D006603 ORTHO05D007786 3.7e-31 138.7 136 61.0
PGR004G2303 Punica granatum HOM05D006603 ORTHO05D007786 3.7e-31 138.7 135 60.7
Hma1.2p1_0112F.1_g054890 Hydrangea macrophylla HOM05D006603 ORTHO05D007786 6.4e-31 137.9 136 58.8
Hund22279 Selenicereus undatus HOM05D006603 ORTHO05D007786 2.4e-30 136.0 128 60.9
CAN.G812.23 Capsicum annuum HOM05D006603 ORTHO05D007786 3.2e-30 135.6 131 59.5
C08p01190 Brassica napus HOM05D003335 ORTHO05D003853 4.1e-30 135.2 103 77.7
BraA09t42112Z Brassica rapa HOM05D000117 ORTHO05D007786 4.1e-30 135.2 100 81.0
Aqoxy2G03755 Aquilegia oxysepala HOM05D006603 ORTHO05D007786 7.0e-30 134.4 143 57.3
Haze_11482 Corylus avellana HOM05D006603 ORTHO05D007786 2.7e-29 132.5 106 73.6
Cc03_g06500 Coffea canephora HOM05D006603 ORTHO05D007786 3.5e-29 132.1 144 56.9
BraA08t35589Z Brassica rapa HOM05D003335 ORTHO05D003853 7.8e-29 131.0 103 75.7
QL06p021600 Quercus lobata HOM05D006603 ORTHO05D007786 1.3e-28 130.2 97 73.2
Gorai.006G254700 Gossypium raimondii HOM05D006603 ORTHO05D007786 2.3e-28 129.4 115 65.2
Sopen09g033770 Solanum pennellii HOM05D006603 ORTHO05D007786 3.0e-28 129.0 133 54.1
FAN17G1046 Fragaria x ananassa HOM05D006603 ORTHO05D007786 3.9e-28 128.6 98 72.4
ClCG06G007300 Citrullus lanatus HOM05D006603 ORTHO05D007786 6.6e-28 127.9 144 56.9
Lsat_1_v5_gn_1_75441 Lactuca sativa HOM05D006603 ORTHO05D007786 1.1e-27 127.1 134 57.5
Sed0025873 Sechium edule HOM05D006603 ORTHO05D007786 1.1e-27 127.1 117 63.2
PSO210G0805 Papaver somniferum HOM05D006603 ORTHO05D007786 4.3e-27 125.2 140 52.9
ATR0787G168 Amborella trichopoda HOM05D006603 ORTHO05D007786 1.6e-26 123.2 136 54.4
Os02g0816700 Oryza sativa ssp. japonica HOM05D006603 ORTHO05D007786 1.6e-26 123.2 139 52.5
PSO210G7184 Papaver somniferum HOM05D006603 ORTHO05D007786 2.1e-26 122.9 142 52.8
Prupe.1G050700 Prunus persica HOM05D006603 ORTHO05D007786 3.6e-26 122.1 98 69.4
Cfa014798 Carpinus fangiana HOM05D006603 ORTHO05D007786 4.7e-26 121.7 113 65.5
CDE04G0122 Ceratophyllum demersum HOM05D006603 ORTHO05D007786 4.7e-26 121.7 139 53.2
HanXRQChr01g0023081 Helianthus annuus HOM05D006603 ORTHO05D007786 6.2e-26 121.3 128 55.5
PGSC0003DMG400001502 Solanum tuberosum HOM05D006603 ORTHO05D007786 1.1e-25 120.6 133 51.1
ECA248G1661 Erigeron canadensis HOM05D006603 ORTHO05D007786 1.4e-25 120.2 130 55.4
MSTRG.9849 Avicennia marina HOM05D006603 ORTHO05D007786 1.8e-25 119.8 141 53.9
Sabra08G0132100 Salix brachista HOM05D006603 ORTHO05D007786 2.3e-25 119.4 89 74.2
Oeu059390.1 Olea europaea HOM05D006603 ORTHO05D007786 3.1e-25 119.0 128 57.0
VMungo0720G0308 Vigna mungo HOM05D006603 ORTHO05D007786 5.2e-25 118.2 117 58.1
vmacro15486 Vaccinium macrocarpon HOM05D006603 ORTHO05D007786 6.8e-25 117.9 165 48.5
COL.COLO4_15990 Corchorus olitorius HOM05D006603 ORTHO05D007786 1.5e-24 116.7 115 59.1
SGA_v2.0_scaffold147G36268 Striga asiatica HOM05D006603 ORTHO05D007786 7.5e-24 114.4 132 55.3
AUR62018035 Chenopodium quinoa HOM05D006603 ORTHO05D007786 4.9e-23 111.7 115 61.7
AUR62015239 Chenopodium quinoa HOM05D006603 ORTHO05D007786 1.9e-22 109.8 114 61.4
Cfa014800 Carpinus fangiana HOM05D006603 ORTHO05D007786 4.1e-22 108.6 80 76.2
Zm00001eb191430 Zea mays HOM05D006603 ORTHO05D007786 3.5e-21 105.5 101 62.4
Ah.04g153810 Amaranthus hybridus HOM05D006603 ORTHO05D007786 4.6e-21 105.1 110 60.0
Migut.G00559 Erythranthe guttata HOM05D006603 ORTHO05D007786 2.3e-20 102.8 143 46.9
Nitab4.5_0001041g0010 Nicotiana tabacum HOM05D006603 ORTHO05D007786 8.6e-20 100.9 113 54.0
Rhsim02G0047700 Rhododendron simsii HOM05D006603 ORTHO05D007786 3.3e-19 99.0 116 50.9
arahy.Tifrunner.gnm1.ann1.QP5CHE Arachis hypogaea HOM05D006603 ORTHO05D007786 7.3e-19 97.8 127 52.8
Solyc09g090820.4 Solanum lycopersicum HOM05D006603 ORTHO05D007786 1.6e-18 96.7 88 60.2
DCAR_027355 Daucus carota HOM05D004511 ORTHO05D005348 1.1e-17 94.0 126 49.2
HPP92_020757 Vanilla planifolia HOM05D006603 ORTHO05D007786 1.8e-17 93.2 140 40.0
Cpa.g.sc59.20 Carica papaya HOM05D006603 ORTHO05D007786 4.0e-17 92.0 72 66.7
Dinv27124 Davidia involucrata HOM05D006603 ORTHO05D007786 5.2e-17 91.7 80 65.0
C08p52130 Brassica napus HOM05D000117 ORTHO05D001036 1.2e-16 90.5 62 79.0
unitig_32.g11693 Utricularia gibba HOM05D006603 ORTHO05D007786 1.5e-16 90.1 168 39.9
A09p67800 Brassica napus HOM05D000117 ORTHO05D001036 4.9e-15 85.1 69 75.4
BolC8t46926H Brassica oleracea HOM05D006603 ORTHO05D007786 6.4e-15 84.7 113 54.0
arahy.Tifrunner.gnm1.ann1.YUK4FD Arachis hypogaea HOM05D006603 ORTHO05D007786 5.4e-14 81.6 141 44.0
SalBow2G0496 Salvia bowleyana HOM05D006603 ORTHO05D007786 2.7e-13 79.3 125 46.4
A10p02970 Brassica napus HOM05D000117 ORTHO05D001036 3.5e-13 79.0 46 93.5
arahy.Tifrunner.gnm1.ann1.M12JR8 Arachis hypogaea HOM05D006603 ORTHO05D007786 4.6e-13 78.6 142 43.0
arahy.Tifrunner.gnm1.ann1.N50CGY Arachis hypogaea HOM05D006603 ORTHO05D007786 1.0e-12 77.4 88 58.0
Sabra10G0042500 Salix brachista HOM05D006603 ORTHO05D007786 1.0e-12 77.4 88 53.4
arahy.Tifrunner.gnm1.ann1.49WF5R Arachis hypogaea HOM05D006603 ORTHO05D007786 8.6e-12 74.3 86 57.0
SMO271G0137 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 3.3e-11 72.4 143 33.6
GSVIVG01027940001 Vitis vinifera HOM05D006603 ORTHO05D015671 1.6e-10 70.1 94 52.1
SMO308G0045 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 8.1e-10 67.8 133 34.6
Mapoly0020s0146 Marchantia polymorpha HOM05D002103 ORTHO05D007786 9.9e-08 60.8 147 33.3
Hma1.2p1_0982F.1_g243900 Hydrangea macrophylla HOM05D002103 ORTHO05D004020 1.7e-07 60.1 144 31.2
Nn1g02998 Nelumbo nucifera HOM05D006603 ORTHO05D007786 2.2e-07 59.7 71 49.3
SMO144G0051 Selaginella moellendorffii HOM05D002103 ORTHO05D007786 8.4e-07 57.8 137 29.9
Cfa018527 Carpinus fangiana HOM05D002103 ORTHO05D004020 1.1e-06 57.4 139 31.7
AagrBONN_evm.TU.Sc2ySwM_228.3673 Anthoceros agrestis HOM05D002103 ORTHO05D004020 1.9e-06 56.6 140 31.4
CiPaw.16G045800 Carya illinoinensis HOM05D002103 ORTHO05D004020 2.4e-06 56.2 146 31.5


User provided reference genes

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