Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t28877H Brassica oleracea HOM05D006082 ORTHO05D007616 1.8e-131 472.6 249 100.0
C05p00920 Brassica napus HOM05D006082 ORTHO05D007616 9.7e-125 450.3 240 98.3
BraA10t42369Z Brassica rapa HOM05D006082 ORTHO05D007616 2.3e-118 429.1 240 94.6
A10p00890 Brassica napus HOM05D006082 ORTHO05D007616 6.8e-118 427.6 240 94.6
BcaB03g13546 Brassica carinata HOM05D006082 ORTHO05D007616 2.9e-105 385.6 225 89.3
Carub.0001s0120 Capsella rubella HOM05D006082 ORTHO05D007616 2.1e-103 379.4 243 83.1
Thhalv10008618m.g Eutrema salsugineum HOM05D006082 ORTHO05D007616 5.7e-101 371.3 244 81.6
Sp1g01290 Schrenkiella parvula HOM05D006082 ORTHO05D007616 3.7e-100 368.6 232 84.5
AL1G11510 Arabidopsis lyrata HOM05D006082 ORTHO05D007616 8.3e-100 367.5 242 82.6
CARHR001490 Cardamine hirsuta HOM05D006082 ORTHO05D007616 1.1e-99 367.1 235 82.1
C05p00960 Brassica napus HOM05D006082 ORTHO05D007616 3.0e-81 305.8 324 60.2
Aa31LG1G10340 Aethionema arabicum HOM05D006082 ORTHO05D007616 1.4e-78 297.0 228 72.4
Sp6g01450 Schrenkiella parvula HOM05D006082 ORTHO05D007616 4.0e-78 295.4 244 66.0
THA.LOC104815904 Tarenaya hassleriana HOM05D006082 ORTHO05D007616 6.8e-78 294.7 225 68.9
AL6G51830 Arabidopsis lyrata HOM05D006082 ORTHO05D007616 9.9e-77 290.8 234 68.8
Carub.0006s3568 Capsella rubella HOM05D006082 ORTHO05D007616 1.7e-76 290.0 223 69.5
A09p01070 Brassica napus HOM05D006082 ORTHO05D007616 4.9e-76 288.5 244 65.2
Thhalv10028930m.g Eutrema salsugineum HOM05D006082 ORTHO05D007616 8.4e-76 287.7 222 68.0
C09p01160 Brassica napus HOM05D006082 ORTHO05D007616 1.1e-75 287.3 242 64.0
CARHR250170 Cardamine hirsuta HOM05D006082 ORTHO05D007616 4.1e-75 285.4 248 62.9
BraA09t35778Z Brassica rapa HOM05D006082 ORTHO05D007616 1.6e-71 273.5 272 58.5
BolC9t53049H Brassica oleracea HOM05D006082 ORTHO05D007616 4.7e-71 271.9 271 57.2
AT1G01020 Arabidopsis thaliana HOM05D006082 ORTHO05D007616 4.2e-67 258.8 199 73.4
BolC5t28880H Brassica oleracea HOM05D006082 ORTHO05D007616 1.5e-64 250.4 292 57.2
AT4G01510 Arabidopsis thaliana HOM05D006082 ORTHO05D007616 5.3e-62 241.9 194 68.0
Duzib133G0864 Durio zibethinus HOM05D006082 ORTHO05D007616 1.5e-61 240.4 223 55.6
Aa31LG5G1260 Aethionema arabicum HOM05D006082 ORTHO05D007616 2.6e-61 239.6 232 58.6
Gohir.A11G102200 Gossypium hirsutum HOM05D006082 ORTHO05D007616 3.4e-61 239.2 223 57.8
Ciclev10022037m.g Citrus clementina HOM05D006082 ORTHO05D007616 4.5e-61 238.8 225 56.0
Gorai.007G114300 Gossypium raimondii HOM05D006082 ORTHO05D007616 1.7e-60 236.9 223 56.5
TPR.G16094 Trifolium pratense HOM05D006082 ORTHO05D007616 2.9e-60 236.1 225 56.4
Potri.014G107300 Populus trichocarpa HOM05D006082 ORTHO05D007616 4.9e-60 235.3 222 55.9
GSVIVG01027464001 Vitis vinifera HOM05D006082 ORTHO05D007616 4.9e-60 235.3 223 56.1
Thecc.01G331100 Theobroma cacao HOM05D006082 ORTHO05D007616 1.4e-59 233.8 221 55.7
Phvul.001G121700 Phaseolus vulgaris HOM05D006082 ORTHO05D007616 9.3e-59 231.1 225 54.7
Atru.chr5.795 Acer truncatum HOM05D006082 ORTHO05D007616 1.6e-58 230.3 221 55.7
Psat3g079600 Pisum sativum HOM05D006082 ORTHO05D007616 4.6e-58 228.8 225 55.6
TAR375G0813 Trochodendron aralioides HOM05D006082 ORTHO05D007616 4.6e-58 228.8 225 53.3
QL01p017595 Quercus lobata HOM05D006082 ORTHO05D007616 6.0e-58 228.4 222 55.0
Lalb_Chr17g0343121 Lupinus albus HOM05D006082 ORTHO05D007616 1.3e-57 227.3 228 52.6
TWI14G1025 Tripterygium wilfordii HOM05D006082 ORTHO05D007616 1.8e-57 226.9 225 54.7
Glyma.03G126300 Glycine max HOM05D006082 ORTHO05D007616 3.9e-57 225.7 225 54.2
MD01G1091900 Malus domestica HOM05D006082 ORTHO05D007616 5.1e-57 225.3 222 55.0
RcHm_v2.0_Chr1g0361381 Rosa chinensis HOM05D006082 ORTHO05D007616 8.7e-57 224.6 222 55.9
Lj1g0004702 Lotus japonicus HOM05D006082 ORTHO05D007616 1.1e-56 224.2 220 53.6
FAN06G3489 Fragaria x ananassa HOM05D006082 ORTHO05D007616 1.5e-56 223.8 222 55.4
Medtr7g089460 Medicago truncatula HOM05D006082 ORTHO05D007616 1.5e-56 223.8 225 54.7
Prupe.2G201100 Prunus persica HOM05D006082 ORTHO05D007616 1.9e-56 223.4 222 55.0
C05p00940 Brassica napus HOM05D006082 ORTHO05D007616 5.6e-56 221.9 136 93.4
FvH4_7g17940 Fragaria vesca HOM05D006082 ORTHO05D007616 5.6e-56 221.9 222 55.4
Actinidia33031 Actinidia chinensis HOM05D006082 ORTHO05D007616 1.6e-55 220.3 227 53.7
Haze_15761 Corylus avellana HOM05D006082 ORTHO05D007616 3.7e-55 219.2 224 53.1
Glyma.19G129400 Glycine max HOM05D006082 ORTHO05D007616 4.8e-55 218.8 224 51.8
FAN06G1515 Fragaria x ananassa HOM05D006082 ORTHO05D007616 8.1e-55 218.0 228 53.9
Eucgr.G03261 Eucalyptus grandis HOM05D006082 ORTHO05D007616 1.4e-54 217.2 225 52.9
MSTRG.15681 Avicennia marina HOM05D006082 ORTHO05D007616 4.0e-54 215.7 223 54.3
Nn1g00467 Nelumbo nucifera HOM05D006082 ORTHO05D007616 4.0e-54 215.7 225 52.0
HanXRQChr14g0454421 Helianthus annuus HOM05D006082 ORTHO05D007616 6.9e-54 214.9 219 52.5
Migut.L00265 Erythranthe guttata HOM05D006082 ORTHO05D007616 1.2e-53 214.2 223 52.5
ECA238G2330 Erigeron canadensis HOM05D006082 ORTHO05D007616 4.5e-53 212.2 219 53.0
FAN03G2817 Fragaria x ananassa HOM05D006082 ORTHO05D007616 7.6e-53 211.5 232 52.6
Aqoxy5G00354 Aquilegia oxysepala HOM05D006082 ORTHO05D007616 9.9e-53 211.1 224 49.6
ATR1136G056 Amborella trichopoda HOM05D006082 ORTHO05D007616 2.2e-52 209.9 222 48.6
Cc03_g11310 Coffea canephora HOM05D006082 ORTHO05D007616 2.2e-52 209.9 223 50.2
Ca_08380_v3 Cicer arietinum L. HOM05D006082 ORTHO05D007616 1.9e-51 206.8 196 56.1
PSO675G6409 Papaver somniferum HOM05D006082 ORTHO05D007616 1.9e-51 206.8 219 52.5
arahy.Tifrunner.gnm1.ann1.6SRZ86 Arachis hypogaea HOM05D006082 ORTHO05D007616 2.4e-51 206.5 218 51.4
CANSAT56G1086 Cannabis sativa HOM05D006082 ORTHO05D007616 7.1e-51 204.9 213 53.1
PSO675G6921 Papaver somniferum HOM05D006082 ORTHO05D007616 1.6e-50 203.8 219 52.5
PGR031G0479 Punica granatum HOM05D006082 ORTHO05D007616 2.1e-50 203.4 229 49.8
PGSC0003DMG400016241 Solanum tuberosum HOM05D006082 ORTHO05D007616 2.1e-50 203.4 221 51.1
CAN.G691.19 Capsicum annuum HOM05D006082 ORTHO05D007616 3.5e-50 202.6 221 51.1
arahy.Tifrunner.gnm1.ann1.9R6DDK Arachis hypogaea HOM05D006082 ORTHO05D007616 4.6e-50 202.2 218 50.9
Solyc11g008790.3 Solanum lycopersicum HOM05D006082 ORTHO05D007616 6.0e-50 201.8 221 51.1
Sopen11g004570 Solanum pennellii HOM05D006082 ORTHO05D007616 6.0e-50 201.8 221 51.1
Dinv04258 Davidia involucrata HOM05D006082 ORTHO05D007616 1.0e-49 201.1 224 48.7
CsaV3_3G007110 Cucumis sativus L. HOM05D006082 ORTHO05D007616 6.7e-49 198.4 218 49.1
FAN10G2982 Fragaria x ananassa HOM05D006082 ORTHO05D007616 1.5e-48 197.2 235 50.6
AUR62016743 Chenopodium quinoa HOM05D006082 ORTHO05D007616 1.6e-47 193.7 212 47.2
HPP92_015681 Vanilla planifolia HOM05D006082 ORTHO05D007616 1.4e-46 190.7 218 49.1
MELO3C005932.2 Cucumis melo HOM05D006082 ORTHO05D007616 5.3e-46 188.7 224 47.8
Ah.01g019340 Amaranthus hybridus HOM05D006082 ORTHO05D007616 2.0e-45 186.8 216 44.4
CDE08G0270 Ceratophyllum demersum HOM05D006082 ORTHO05D007616 5.8e-45 185.3 223 44.8
Gohir.D11G106800 Gossypium hirsutum HOM05D006082 ORTHO05D007616 4.9e-44 182.2 223 48.9
ClCG05G000050 Citrullus lanatus HOM05D006082 ORTHO05D007616 2.5e-43 179.9 235 45.1
Os03g0784300 Oryza sativa ssp. japonica HOM05D006082 ORTHO05D007616 3.2e-43 179.5 217 46.1
CANSAT56G0035 Cannabis sativa HOM05D006082 ORTHO05D007616 6.0e-42 175.3 213 48.8
Manes.05G014900 Manihot esculenta HOM05D006082 ORTHO05D007616 6.0e-42 175.3 171 55.0
BcaC05g24597 Brassica carinata HOM05D006082 ORTHO05D007616 5.7e-40 168.7 193 57.0
MBI06_g35217_MAGBIO Magnolia biondii HOM05D006082 ORTHO05D007616 7.4e-40 168.3 218 42.2
unitig_899.g14456 Utricularia gibba HOM05D003044 ORTHO05D007616 4.8e-39 165.6 199 49.7
SEGI_04405 Sequoiadendron giganteum HOM05D006082 ORTHO05D007616 5.3e-38 162.2 217 41.5
COL.COLO4_23067 Corchorus olitorius HOM05D006082 ORTHO05D007616 9.0e-38 161.4 142 57.0
vmacro11192 Vaccinium macrocarpon HOM05D006082 ORTHO05D007616 1.7e-36 157.1 310 36.8
FAN01G2730 Fragaria x ananassa HOM05D006082 ORTHO05D007616 1.1e-35 154.5 221 45.2
CiPaw.01G087100 Carya illinoinensis HOM05D006082 ORTHO05D007616 7.2e-35 151.8 180 50.6
Sc24g0001860 Simmondsia chinensis HOM05D006082 ORTHO05D007616 9.4e-35 151.4 194 45.9
Nitab4.5_0000743g0220 Nicotiana tabacum HOM05D006082 ORTHO05D007616 1.6e-34 150.6 227 43.2
Lsat_1_v5_gn_2_88861 Lactuca sativa HOM05D006082 ORTHO05D007616 6.1e-34 148.7 191 47.6
Potri.002G181700 Populus trichocarpa HOM05D006082 ORTHO05D007616 1.1e-32 144.4 217 40.1
Pp3c10_9330 Physcomitrium patens HOM05D006082 ORTHO05D007616 1.9e-32 143.7 216 42.1
CSS0012451 Camellia sinensis var. sinensis HOM05D006082 ORTHO05D007616 1.3e-31 141.0 185 44.3
Migut.L00585 Erythranthe guttata HOM05D006082 ORTHO05D007616 1.8e-30 137.1 89 66.3
Mapoly0050s0018 Marchantia polymorpha HOM05D006082 ORTHO05D007616 2.0e-29 133.7 199 38.2
Peaxi162Scf00090g00046 Petunia axillaris HOM05D006082 ORTHO05D007616 5.9e-29 132.1 249 37.8
DCAR_014739 Daucus carota HOM05D006082 ORTHO05D007616 7.7e-29 131.7 213 36.6
Zm00001eb059810 Zea mays HOM05D006082 ORTHO05D007616 2.9e-28 129.8 189 40.7
EL10Ac9g21719 Beta vulgaris HOM05D006082 ORTHO05D003517 6.5e-28 128.6 157 45.2
AagrBONN_evm.TU.Sc2ySwM_340.22 Anthoceros agrestis HOM05D006082 ORTHO05D007616 1.1e-27 127.9 215 39.1
Nitab4.5_0001677g0060 Nicotiana tabacum HOM05D006082 ORTHO05D007616 3.6e-26 122.9 277 32.9
SMO367G0224 Selaginella moellendorffii HOM05D006082 ORTHO05D007616 6.7e-25 118.6 214 37.4
Hma1.2p1_0262F.1_g105255 Hydrangea macrophylla HOM05D006082 ORTHO05D007616 1.5e-24 117.5 74 63.5
Hma1.2p1_0451F.1_g155790 Hydrangea macrophylla HOM05D006082 ORTHO05D007616 2.6e-24 116.7 73 64.4
CBR_g1036 Chara braunii HOM05D006082 ORTHO05D007616 1.7e-23 114.0 256 33.2
BcaC05g24595 Brassica carinata HOM05D006082 ORTHO05D007616 3.7e-23 112.8 80 87.5
SEGI_20928 Sequoiadendron giganteum HOM05D006082 ORTHO05D007616 8.2e-23 111.7 137 42.3
MD07G1162500 Malus domestica HOM05D006082 ORTHO05D007616 7.0e-22 108.6 118 48.3
GSVIVG01003191001 Vitis vinifera HOM05D006082 ORTHO05D007616 3.2e-19 99.8 105 55.2
arahy.Tifrunner.gnm1.ann1.PGF6M0 Arachis hypogaea HOM05D006082 ORTHO05D007616 2.3e-17 93.6 239 31.4
Sed0024729 Sechium edule HOM05D006082 ORTHO05D007616 4.4e-16 89.4 133 42.9
GSVIVG01003186001 Vitis vinifera HOM05D006082 ORTHO05D007616 9.7e-16 88.2 84 56.0
QL03p043604 Quercus lobata HOM05D006082 ORTHO05D007616 1.1e-14 84.7 195 32.8
Hma1.2p1_0451F.1_g155800 Hydrangea macrophylla HOM05D006082 ORTHO05D007616 7.0e-14 82.0 104 45.2
SMO230G0051 Selaginella moellendorffii HOM05D006082 ORTHO05D007616 1.0e-09 68.2 163 31.9
MD07G1162600 Malus domestica HOM05D006082 ORTHO05D007616 7.5e-08 62.0 58 60.3


User provided reference genes

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