Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC4t28709H Brassica oleracea HOM05D007265 ORTHO05D009118 2.5e-27 124.8 66 100.0
A04p34450 Brassica napus HOM05D007265 ORTHO05D009118 6.1e-26 120.2 66 95.5
BcaC02g07039 Brassica carinata HOM05D007265 ORTHO05D009118 1.8e-25 118.6 66 93.9
BraA04t18903Z Brassica rapa HOM05D007265 ORTHO05D009118 2.3e-25 118.2 66 93.9
AT2G46540 Arabidopsis thaliana HOM05D007265 ORTHO05D009118 6.3e-23 110.2 66 89.4
Sp4g28590 Schrenkiella parvula HOM05D007265 ORTHO05D009118 6.3e-23 110.2 66 89.4
AL4G45970 Arabidopsis lyrata HOM05D007265 ORTHO05D009118 8.3e-23 109.8 66 87.9
BcaC02g12671 Brassica carinata HOM05D007265 ORTHO05D009118 1.4e-22 109.0 66 87.9
BcaC02g12679 Brassica carinata HOM05D007265 ORTHO05D009118 1.4e-22 109.0 66 87.9
C04p01380 Brassica napus HOM05D007265 ORTHO05D009118 1.4e-22 109.0 66 87.9
BolC4t21791H Brassica oleracea HOM05D007265 ORTHO05D009118 1.4e-22 109.0 66 87.9
BraA05t19124Z Brassica rapa HOM05D007265 ORTHO05D009118 1.4e-22 109.0 66 87.9
Carub.0004s2926 Capsella rubella HOM05D007265 ORTHO05D009118 2.4e-22 108.2 64 89.1
BcaC02g07016 Brassica carinata HOM05D007265 ORTHO05D009118 2.7e-21 104.8 58 93.1
THA.LOC104817372 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 3.8e-20 100.9 66 77.3
CARHR141880 Cardamine hirsuta HOM05D007265 ORTHO05D009118 6.6e-20 100.1 66 81.8
PGSC0003DMG400000233 Solanum tuberosum HOM05D007265 ORTHO05D009118 8.6e-20 99.8 66 77.3
THA.LOC104802081 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 3.3e-19 97.8 66 75.8
CAN.G1415.20 Capsicum annuum HOM05D007265 ORTHO05D009118 7.2e-19 96.7 66 74.2
Solyc01g096090.4 Solanum lycopersicum HOM05D007265 ORTHO05D009118 7.2e-19 96.7 66 75.8
Sopen01g039810 Solanum pennellii HOM05D007265 ORTHO05D009118 7.2e-19 96.7 66 75.8
Nitab4.5_0001763g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 2.8e-18 94.7 66 74.2
MD01G1083600 Malus domestica HOM05D007265 ORTHO05D009118 4.7e-18 94.0 63 77.8
MD07G1152300 Malus domestica HOM05D007265 ORTHO05D009118 4.7e-18 94.0 63 77.8
BcaNung06658 Brassica carinata HOM05D007265 ORTHO05D009118 6.1e-18 93.6 50 94.0
Thecc.01G340400 Theobroma cacao HOM05D007265 ORTHO05D009118 6.1e-18 93.6 66 72.7
Hma1.2p1_0390F.1_g142620 Hydrangea macrophylla HOM05D007265 ORTHO05D009118 1.0e-17 92.8 64 75.0
A05p01230 Brassica napus HOM05D007265 ORTHO05D009118 1.4e-17 92.4 55 89.1
CiPaw.01G077600 Carya illinoinensis HOM05D007265 ORTHO05D009118 1.4e-17 92.4 63 76.2
Duzib138G0325 Durio zibethinus HOM05D007265 ORTHO05D009118 1.4e-17 92.4 66 74.2
Ciclev10023834m.g Citrus clementina HOM05D007265 ORTHO05D009118 1.8e-17 92.0 66 72.7
Prupe.2G190600 Prunus persica HOM05D007265 ORTHO05D009118 1.8e-17 92.0 63 76.2
Nn1g00287 Nelumbo nucifera HOM05D007265 ORTHO05D009118 2.3e-17 91.7 64 71.9
Gohir.A11G097900 Gossypium hirsutum HOM05D007265 ORTHO05D009118 4.0e-17 90.9 66 72.7
Gohir.D11G102600 Gossypium hirsutum HOM05D007265 ORTHO05D009118 4.0e-17 90.9 66 72.7
Atru.chr5.686 Acer truncatum HOM05D007265 ORTHO05D009118 5.2e-17 90.5 63 74.6
Duzib133G0073 Durio zibethinus HOM05D007265 ORTHO05D009118 5.2e-17 90.5 66 71.2
PGR042G1917 Punica granatum HOM05D007265 ORTHO05D009118 6.8e-17 90.1 66 69.7
Cc02_g39560 Coffea canephora HOM05D007265 ORTHO05D009118 8.9e-17 89.7 63 71.4
DCAR_005402 Daucus carota HOM05D007265 ORTHO05D009118 8.9e-17 89.7 66 69.7
TAR374G1528 Trochodendron aralioides HOM05D007265 ORTHO05D009118 1.2e-16 89.4 63 73.0
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 1.2e-16 89.4 64 68.8
Lj7E499T0 Lonicera japonica HOM05D007265 ORTHO05D009118 1.5e-16 89.0 66 66.7
Nitab4.5_0003865g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 2.0e-16 88.6 66 69.7
Sabra02G0140200 Salix brachista HOM05D007265 ORTHO05D009118 2.0e-16 88.6 68 69.1
PSO063G4371 Papaver somniferum HOM05D007265 ORTHO05D009118 2.6e-16 88.2 64 70.3
ATR0602G127 Amborella trichopoda HOM05D007265 ORTHO05D009118 3.4e-16 87.8 64 68.8
DCAR_025264 Daucus carota HOM05D007265 ORTHO05D009118 3.4e-16 87.8 66 69.7
Aa31LG1G27910 Aethionema arabicum HOM05D007265 ORTHO05D009118 4.4e-16 87.4 53 83.0
Thhalv10001742m.g Eutrema salsugineum HOM05D007265 ORTHO05D009118 4.4e-16 87.4 114 51.8
Gohir.D12G116700 Gossypium hirsutum HOM05D007265 ORTHO05D009118 4.4e-16 87.4 66 68.2
PSO170G4391 Papaver somniferum HOM05D007265 ORTHO05D009118 5.7e-16 87.0 64 68.8
Potri.002G173101 Populus trichocarpa HOM05D007265 ORTHO05D009118 5.7e-16 87.0 68 69.1
HanXRQChr13g0423241 Helianthus annuus HOM05D007265 ORTHO05D009118 7.5e-16 86.7 64 65.6
Nitab4.5_0000258g0270 Nicotiana tabacum HOM05D007265 ORTHO05D009118 7.5e-16 86.7 66 66.7
TWI59G0786 Tripterygium wilfordii HOM05D007265 ORTHO05D009118 7.5e-16 86.7 63 69.8
CSS0038215 Camellia sinensis var. sinensis HOM05D007265 ORTHO05D009118 9.8e-16 86.3 66 68.2
Oeu008708.1 Olea europaea HOM05D007265 ORTHO05D009118 1.3e-15 85.9 66 65.2
GSVIVG01027169001 Vitis vinifera HOM05D007265 ORTHO05D009118 1.3e-15 85.9 66 66.7
Aqoxy5G04249 Aquilegia oxysepala HOM05D007265 ORTHO05D009118 1.7e-15 85.5 61 72.1
MELO3C022263.2 Cucumis melo HOM05D007265 ORTHO05D009118 1.7e-15 85.5 63 68.3
Migut.N01534 Erythranthe guttata HOM05D007265 ORTHO05D009118 1.7e-15 85.5 66 66.7
Gohir.A12G113200 Gossypium hirsutum HOM05D007265 ORTHO05D009118 1.7e-15 85.5 66 66.7
HanXRQChr03g0093001 Helianthus annuus HOM05D007265 ORTHO05D009118 2.2e-15 85.1 63 66.7
CsaV3_6G008500 Cucumis sativus L. HOM05D007265 ORTHO05D009118 2.8e-15 84.7 63 68.3
Lsat_1_v5_gn_4_39661 Lactuca sativa HOM05D007265 ORTHO05D009118 3.7e-15 84.3 58 70.7
HanXRQChr16g0521331 Helianthus annuus HOM05D007265 ORTHO05D009118 4.9e-15 84.0 64 64.1
Manes.01G244801 Manihot esculenta HOM05D007265 ORTHO05D009118 6.3e-15 83.6 59 72.9
Sed0002056 Sechium edule HOM05D007265 ORTHO05D009118 2.4e-14 81.6 63 66.7
CANSAT56G3703 Cannabis sativa HOM05D007265 ORTHO05D009118 4.1e-14 80.9 63 66.7
Glyma.03G258500 Glycine max HOM05D007265 ORTHO05D009118 7.0e-14 80.1 63 63.5
Glyma.19G257100 Glycine max HOM05D007265 ORTHO05D009118 7.0e-14 80.1 63 63.5
Nn3g18955 Nelumbo nucifera HOM05D007265 ORTHO05D009118 9.2e-14 79.7 64 68.8
Phvul.006G114500 Phaseolus vulgaris HOM05D007265 ORTHO05D009118 9.2e-14 79.7 63 63.5
Medtr7g117700 Medicago truncatula HOM05D007265 ORTHO05D009118 1.2e-13 79.3 63 63.5
Sc01g0002550 Simmondsia chinensis HOM05D007265 ORTHO05D009118 1.2e-13 79.3 57 66.7
EL10Ac1g00247 Beta vulgaris HOM05D007265 ORTHO05D009118 1.6e-13 79.0 55 67.3
COL.COLO4_06226 Corchorus olitorius HOM05D007265 ORTHO05D009118 1.6e-13 79.0 53 77.4
arahy.Tifrunner.gnm1.ann1.4N8QKH Arachis hypogaea HOM05D007265 ORTHO05D009118 2.0e-13 78.6 61 65.6
arahy.Tifrunner.gnm1.ann1.PH1UFL Arachis hypogaea HOM05D007265 ORTHO05D009118 2.0e-13 78.6 60 66.7
Os05g0542100 Oryza sativa ssp. japonica HOM05D007265 ORTHO05D009118 2.0e-13 78.6 66 60.6
Ca_09518_v3 Cicer arietinum L. HOM05D007265 ORTHO05D009118 2.7e-13 78.2 63 61.9
Manes.05G021500 Manihot esculenta HOM05D007265 ORTHO05D009118 2.7e-13 78.2 59 67.8
Hund16719 Selenicereus undatus HOM05D007265 ORTHO05D009118 2.7e-13 78.2 81 50.6
Hund27188 Selenicereus undatus HOM05D007265 ORTHO05D009118 2.7e-13 78.2 57 68.4
ClCG06G002640 Citrullus lanatus HOM05D007265 ORTHO05D009118 4.5e-13 77.4 56 71.4
Lsat_1_v5_gn_3_126500 Lactuca sativa HOM05D007265 ORTHO05D009118 5.9e-13 77.0 57 66.7
SalBow5G3999 Salvia bowleyana HOM05D002476 ORTHO05D002652 5.9e-13 77.0 55 74.5
Oeu007878.1 Olea europaea HOM05D007265 ORTHO05D009118 1.3e-12 75.9 55 72.7
vmacro13170 Vaccinium macrocarpon HOM05D007265 ORTHO05D009118 1.7e-12 75.5 58 67.2
MSTRG.17355 Avicennia marina HOM05D007265 ORTHO05D009118 2.9e-12 74.7 53 75.5
AUR62004508 Chenopodium quinoa HOM05D007265 ORTHO05D009118 2.9e-12 74.7 52 71.2
Lj1g0009143 Lotus japonicus HOM05D007265 ORTHO05D009118 2.9e-12 74.7 63 58.7
Lalb_Chr18g0044541 Lupinus albus HOM05D007265 ORTHO05D009118 5.0e-12 73.9 63 61.9
MBI07_g24775_MAGBIO Magnolia biondii HOM05D007265 ORTHO05D009118 6.6e-12 73.6 60 65.0
Gorai.008G126400 Gossypium raimondii HOM05D007265 ORTHO05D009118 1.1e-11 72.8 55 67.3
Ah.05g179400 Amaranthus hybridus HOM05D007265 ORTHO05D009118 1.9e-11 72.0 57 63.2
Rhsim01G0174400 Rhododendron simsii HOM05D007265 ORTHO05D009118 2.5e-11 71.6 50 72.0
Os01g0705500 Oryza sativa ssp. japonica HOM05D007265 ORTHO05D009118 9.5e-11 69.7 51 72.5
Lalb_Chr15g0076341 Lupinus albus HOM05D007265 ORTHO05D009118 1.2e-10 69.3 63 57.1
Gorai.007G109700 Gossypium raimondii HOM05D007265 ORTHO05D009118 3.6e-10 67.8 45 77.8
Psat3g001880 Pisum sativum HOM05D007265 ORTHO05D009118 3.1e-09 64.7 52 63.5
Psat3g174080 Pisum sativum HOM05D007265 ORTHO05D009118 3.1e-09 64.7 56 58.9
BcaC03g16694 Brassica carinata HOM05D007265 ORTHO05D009118 8.3e-07 56.6 64 60.9


User provided reference genes

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