Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC4t28360H Brassica oleracea HOM05D004331 ORTHO05D004984 1.5e-44 182.6 100 100.0
CiPaw.01G307700 Carya illinoinensis HOM05D004331 ORTHO05D004984 8.1e-14 80.5 71 63.4
QL08p065166 Quercus lobata HOM05D004331 ORTHO05D004984 1.4e-13 79.7 71 62.0
AL4G38690 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 1.8e-13 79.3 68 64.7
AT3G56430 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 1.8e-13 79.3 68 64.7
Carub.0005s2321 Capsella rubella HOM05D004331 ORTHO05D004984 1.8e-13 79.3 68 64.7
CAN.G30.2 Capsicum annuum HOM05D004331 ORTHO05D004984 1.8e-13 79.3 68 63.2
CARHR166560 Cardamine hirsuta HOM05D004331 ORTHO05D004984 1.8e-13 79.3 68 64.7
Thhalv10016808m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 1.8e-13 79.3 68 64.7
Nitab4.5_0009756g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 1.8e-13 79.3 68 63.2
Aa31LG10G11310 Aethionema arabicum HOM05D004331 ORTHO05D004984 3.1e-13 78.6 68 63.2
BcaC02g12734 Brassica carinata HOM05D004331 ORTHO05D004984 4.0e-13 78.2 71 62.0
BcaC09g50388 Brassica carinata HOM05D004331 ORTHO05D004984 4.0e-13 78.2 71 62.0
BcaC09g50949 Brassica carinata HOM05D004331 ORTHO05D004984 4.0e-13 78.2 71 62.0
A05p01900 Brassica napus HOM05D004331 ORTHO05D004984 4.0e-13 78.2 71 62.0
A09p49380 Brassica napus HOM05D004331 ORTHO05D004984 4.0e-13 78.2 68 63.2
C04p02240 Brassica napus HOM05D004331 ORTHO05D004984 4.0e-13 78.2 71 62.0
C08p31740 Brassica napus HOM05D004331 ORTHO05D004984 4.0e-13 78.2 68 63.2
BolC4t21871H Brassica oleracea HOM05D004331 ORTHO05D004984 4.0e-13 78.2 71 62.0
BraA05t19188Z Brassica rapa HOM05D004331 ORTHO05D004984 4.0e-13 78.2 71 62.0
BraA09t40391Z Brassica rapa HOM05D004331 ORTHO05D004984 4.0e-13 78.2 68 63.2
Thhalv10006036m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 4.0e-13 78.2 68 63.2
Gohir.D10G184000 Gossypium hirsutum HOM05D004331 ORTHO05D004984 4.0e-13 78.2 71 62.0
Gorai.011G206200 Gossypium raimondii HOM05D004331 ORTHO05D004984 4.0e-13 78.2 71 62.0
Sp4g23120 Schrenkiella parvula HOM05D004331 ORTHO05D004984 4.0e-13 78.2 71 62.0
Sp5g06060 Schrenkiella parvula HOM05D004331 ORTHO05D004984 4.0e-13 78.2 68 63.2
AT2G40800 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 5.3e-13 77.8 68 63.2
CARHR135900 Cardamine hirsuta HOM05D004331 ORTHO05D004984 5.3e-13 77.8 68 63.2
Potri.019G062200 Populus trichocarpa HOM05D004331 ORTHO05D004984 5.3e-13 77.8 71 60.6
PGSC0003DMG400005253 Solanum tuberosum HOM05D004331 ORTHO05D004984 5.3e-13 77.8 68 61.8
AL5G37760 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 6.9e-13 77.4 67 64.2
Cfa001189 Carpinus fangiana HOM05D004331 ORTHO05D004984 6.9e-13 77.4 71 60.6
THA.LOC104814366 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 6.9e-13 77.4 68 61.8
Actinidia01013 Actinidia chinensis HOM05D004331 ORTHO05D004984 9.0e-13 77.0 68 60.3
MSTRG.156 Avicennia marina HOM05D004331 ORTHO05D004984 9.0e-13 77.0 68 61.8
DCAR_020157 Daucus carota HOM05D004331 ORTHO05D004984 9.0e-13 77.0 71 57.7
Migut.F00564 Erythranthe guttata HOM05D004331 ORTHO05D004984 9.0e-13 77.0 68 61.8
Gohir.A10G177400 Gossypium hirsutum HOM05D004331 ORTHO05D004984 9.0e-13 77.0 71 60.6
Lj1A969T93 Lonicera japonica HOM05D004331 ORTHO05D004984 9.0e-13 77.0 68 60.3
Peaxi162Scf00073g02119 Petunia axillaris HOM05D004331 ORTHO05D004984 9.0e-13 77.0 68 60.3
PGR142G0580 Punica granatum HOM05D004331 ORTHO05D004984 9.0e-13 77.0 68 60.3
MD01G1171000 Malus domestica HOM05D004331 ORTHO05D004984 1.2e-12 76.6 71 60.6
Sopen03g025450 Solanum pennellii HOM05D004331 ORTHO05D004984 1.2e-12 76.6 68 60.3
SGA_v2.0_scaffold397G50761 Striga asiatica HOM05D004331 ORTHO05D004984 1.2e-12 76.6 71 59.2
TAR636G1774 Trochodendron aralioides HOM05D004331 ORTHO05D004984 1.2e-12 76.6 71 59.2
Atru.chr12.214 Acer truncatum HOM05D004331 ORTHO05D004984 1.5e-12 76.3 71 59.2
BcaC02g11378 Brassica carinata HOM05D004331 ORTHO05D004984 1.5e-12 76.3 71 62.0
C04p16400 Brassica napus HOM05D004331 ORTHO05D004984 1.5e-12 76.3 71 62.0
BolC8t50795H Brassica oleracea HOM05D004331 ORTHO05D004984 1.5e-12 76.3 68 61.8
Cc02_g05110 Coffea canephora HOM05D004331 ORTHO05D004984 1.5e-12 76.3 68 60.3
FvH4_7g26230 Fragaria vesca HOM05D004331 ORTHO05D004984 1.5e-12 76.3 71 59.2
FAN01G2544 Fragaria x ananassa HOM05D004331 ORTHO05D004984 1.5e-12 76.3 71 59.2
FAN06G3213 Fragaria x ananassa HOM05D004331 ORTHO05D004984 1.5e-12 76.3 71 59.2
FAN10G3590 Fragaria x ananassa HOM05D004331 ORTHO05D004984 1.5e-12 76.3 71 59.2
BolC1t02551H Brassica oleracea HOM05D004331 ORTHO05D004984 2.0e-12 75.9 71 60.6
Duzib128G0601 Durio zibethinus HOM05D004331 ORTHO05D004984 2.0e-12 75.9 71 59.2
Os01g0168300 Oryza sativa ssp. japonica HOM05D004331 ORTHO05D004984 2.0e-12 75.9 71 57.7
TWI73G1241 Tripterygium wilfordii HOM05D004331 ORTHO05D004984 2.0e-12 75.9 68 60.3
ATR1127G084 Amborella trichopoda HOM05D004331 ORTHO05D004984 2.6e-12 75.5 71 57.7
Haze_17376 Corylus avellana HOM05D004331 ORTHO05D004984 2.6e-12 75.5 71 59.2
MELO3C022105.2 Cucumis melo HOM05D004331 ORTHO05D004984 2.6e-12 75.5 71 59.2
CsaV3_5G039270 Cucumis sativus L. HOM05D004331 ORTHO05D004984 2.6e-12 75.5 71 59.2
Dinv21866 Davidia involucrata HOM05D004331 ORTHO05D004984 2.6e-12 75.5 68 58.8
Duzib114G0903 Durio zibethinus HOM05D004331 ORTHO05D004984 2.6e-12 75.5 71 59.2
Glyma.06G141000 Glycine max HOM05D004331 ORTHO05D004984 2.6e-12 75.5 68 58.8
Solyc03g095470.3 Solanum lycopersicum HOM05D004331 ORTHO05D004984 2.6e-12 75.5 68 58.8
arahy.Tifrunner.gnm1.ann1.J1TSCZ Arachis hypogaea HOM05D004331 ORTHO05D004984 3.4e-12 75.1 67 59.7
arahy.Tifrunner.gnm1.ann1.M9I45E Arachis hypogaea HOM05D004331 ORTHO05D004984 3.4e-12 75.1 67 59.7
CSS0028422 Camellia sinensis var. sinensis HOM05D004331 ORTHO05D004984 3.4e-12 75.1 67 58.2
ClCG11G005520 Citrullus lanatus HOM05D004331 ORTHO05D004984 3.4e-12 75.1 71 57.7
MD07G1237400 Malus domestica HOM05D004331 ORTHO05D004984 3.4e-12 75.1 71 59.2
Nn5g26801 Nelumbo nucifera HOM05D004331 ORTHO05D004984 3.4e-12 75.1 71 57.7
Rhsim09G0186700 Rhododendron simsii HOM05D004331 ORTHO05D004984 3.4e-12 75.1 68 57.4
RcHm_v2.0_Chr1g0372681 Rosa chinensis HOM05D004331 ORTHO05D004984 3.4e-12 75.1 71 57.7
Sabra19G0075700 Salix brachista HOM05D004331 ORTHO05D004984 3.4e-12 75.1 71 59.2
Sabra19G0081100 Salix brachista HOM05D004331 ORTHO05D004984 3.4e-12 75.1 71 59.2
SalBow3G0869 Salvia bowleyana HOM05D004331 ORTHO05D004984 3.4e-12 75.1 68 58.8
Cpa.g.sc19.35 Carica papaya HOM05D004331 ORTHO05D004984 4.5e-12 74.7 68 58.8
MBI15_g36678_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 4.5e-12 74.7 68 60.3
Oeu039397.2 Olea europaea HOM05D004331 ORTHO05D004984 4.5e-12 74.7 68 60.3
Actinidia07780 Actinidia chinensis HOM05D004331 ORTHO05D004984 5.8e-12 74.3 68 58.8
C01p18940 Brassica napus HOM05D004331 ORTHO05D004984 5.8e-12 74.3 71 59.2
BolC1t01820H Brassica oleracea HOM05D004331 ORTHO05D004984 5.8e-12 74.3 71 59.2
SEGI_36006 Sequoiadendron giganteum HOM05D004331 ORTHO05D004984 5.8e-12 74.3 71 56.3
Sc11g0006070 Simmondsia chinensis HOM05D004331 ORTHO05D004984 5.8e-12 74.3 68 57.4
Aqoxy4G03301 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 7.6e-12 73.9 71 54.9
Dinv34508 Davidia involucrata HOM05D004331 ORTHO05D004984 7.6e-12 73.9 68 57.4
ECA238G1814 Erigeron canadensis HOM05D004331 ORTHO05D004984 7.6e-12 73.9 68 57.4
Hma1.2p1_0264F.1_g105850 Hydrangea macrophylla HOM05D004331 ORTHO05D004984 7.6e-12 73.9 68 58.8
C09p26570 Brassica napus HOM05D004331 ORTHO05D004984 1.0e-11 73.6 100 51.0
BolC9t55553H Brassica oleracea HOM05D004331 ORTHO05D004984 1.0e-11 73.6 100 51.0
Manes.10G004100 Manihot esculenta HOM05D004331 ORTHO05D004984 1.0e-11 73.6 71 54.9
vmacro09950 Vaccinium macrocarpon HOM05D004331 ORTHO05D004984 1.0e-11 73.6 68 55.9
GSVIVG01032862001 Vitis vinifera HOM05D004331 ORTHO05D004984 1.0e-11 73.6 71 54.9
HanXRQChr07g0204811 Helianthus annuus HOM05D004331 ORTHO05D004984 1.3e-11 73.2 68 57.4
unitig_88.g27825 Utricularia gibba HOM05D004331 ORTHO05D004984 1.3e-11 73.2 71 57.7
HPP92_012570 Vanilla planifolia HOM05D004331 ORTHO05D004984 1.3e-11 73.2 71 56.3
BcaC04g21857 Brassica carinata HOM05D004331 ORTHO05D004984 1.7e-11 72.8 100 51.0
CANSAT56G0386 Cannabis sativa HOM05D004331 ORTHO05D004984 1.7e-11 72.8 67 59.7
Sed0000286 Sechium edule HOM05D004331 ORTHO05D004984 1.7e-11 72.8 71 56.3
THA.LOC104824369 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 1.7e-11 72.8 68 57.4
C01p26060 Brassica napus HOM05D004331 ORTHO05D004984 2.2e-11 72.4 71 59.2
Lalb_Chr08g0239281 Lupinus albus HOM05D004331 ORTHO05D004984 2.2e-11 72.4 68 55.9
Lalb_Chr11g0067651 Lupinus albus HOM05D004331 ORTHO05D004984 2.2e-11 72.4 68 57.4
Ciclev10031884m.g Citrus clementina HOM05D004331 ORTHO05D004984 2.9e-11 72.0 71 56.3
Thecc.10G186200 Theobroma cacao HOM05D004331 ORTHO05D004984 2.9e-11 72.0 71 57.7
Psat5g069640 Pisum sativum HOM05D004331 ORTHO05D004984 4.9e-11 71.2 68 54.4
Zm00001eb336450 Zea mays HOM05D004331 ORTHO05D004984 4.9e-11 71.2 71 53.5
Lj1g0025811 Lotus japonicus HOM05D004331 ORTHO05D004984 6.5e-11 70.9 68 51.5
AUR62030578 Chenopodium quinoa HOM05D004331 ORTHO05D004984 8.4e-11 70.5 68 55.9
Ca_16853_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 8.4e-11 70.5 68 52.9
Ca_29501_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 8.4e-11 70.5 68 52.9
COL.COLO4_19485 Corchorus olitorius HOM05D004331 ORTHO05D004984 8.4e-11 70.5 71 56.3
Eucgr.G03152 Eucalyptus grandis HOM05D004331 ORTHO05D004984 8.4e-11 70.5 71 53.5
Lsat_1_v5_gn_2_127600 Lactuca sativa HOM05D004331 ORTHO05D004984 8.4e-11 70.5 68 54.4
Phvul.009G042200 Phaseolus vulgaris HOM05D004331 ORTHO05D004984 8.4e-11 70.5 71 52.1
Glyma.04G223900 Glycine max HOM05D004331 ORTHO05D004984 1.4e-10 69.7 68 54.4
AUR62032546 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.9e-10 69.3 68 54.4
TPR.G13966 Trifolium pratense HOM05D004331 ORTHO05D004984 1.9e-10 69.3 68 52.9
Eucgr.L02349 Eucalyptus grandis HOM05D004331 ORTHO05D004984 2.5e-10 68.9 71 52.1
BraA04t18575Z Brassica rapa HOM05D004331 ORTHO05D016805 5.5e-10 67.8 66 60.6
Medtr3g093690 Medicago truncatula HOM05D004331 ORTHO05D004984 5.5e-10 67.8 68 51.5
SGA_v2.0_scaffold60G20876 Striga asiatica HOM05D004331 ORTHO05D004984 5.5e-10 67.8 95 45.3
EL10Ac2g02684 Beta vulgaris HOM05D004331 ORTHO05D004984 1.2e-09 66.6 71 52.1
Hund13431 Selenicereus undatus HOM05D004331 ORTHO05D004984 2.1e-09 65.9 68 52.9
PSO017G4126 Papaver somniferum HOM05D004331 ORTHO05D004984 2.7e-09 65.5 101 44.6
PSO170G2208 Papaver somniferum HOM05D004331 ORTHO05D004984 2.7e-09 65.5 101 44.6
VMungo1309G0248 Vigna mungo HOM05D004331 ORTHO05D004984 4.6e-09 64.7 67 50.7
Ah.10g029610 Amaranthus hybridus HOM05D000033 ORTHO05D000913 7.9e-09 63.9 68 48.5
BcaC01g00580 Brassica carinata HOM05D003032 ORTHO05D003456 7.9e-09 63.9 65 58.5
C03p81590 Brassica napus HOM05D004331 ORTHO05D004984 7.9e-09 63.9 65 58.5
BolC3t20429H Brassica oleracea HOM05D004331 ORTHO05D004984 7.9e-09 63.9 65 58.5
Actinidia13632 Actinidia chinensis HOM05D004331 ORTHO05D004984 3.0e-08 62.0 70 51.4
Mapoly0158s0020 Marchantia polymorpha HOM05D004331 ORTHO05D004984 6.7e-08 60.8 71 49.3
AagrBONN_evm.TU.Sc2ySwM_340.90 Anthoceros agrestis HOM05D004331 ORTHO05D004984 7.4e-07 57.4 71 47.9
Pp3c7_18440 Physcomitrium patens HOM05D004331 ORTHO05D004984 9.6e-07 57.0 68 48.5
Pp3c1_5190 Physcomitrium patens HOM05D004331 ORTHO05D004984 2.8e-06 55.5 67 49.3


User provided reference genes

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