Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC4t28355H Brassica oleracea HOM05D004876 ORTHO05D005488 1.3e-91 339.7 172 100.0
A04p31160 Brassica napus HOM05D004876 ORTHO05D005488 2.3e-88 328.9 172 97.1
C04p68560 Brassica napus HOM05D004876 ORTHO05D005488 2.3e-88 328.9 172 97.1
BraA04t18571Z Brassica rapa HOM05D004876 ORTHO05D005488 5.0e-88 327.8 172 96.5
BcaB06g29175 Brassica carinata HOM05D004876 ORTHO05D005488 1.2e-86 323.2 175 95.4
Carub.0004s2308 Capsella rubella HOM05D004876 ORTHO05D005488 4.7e-86 321.2 175 93.1
AL4G34450 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 5.4e-82 307.8 175 90.9
Sp4g23100 Schrenkiella parvula HOM05D004876 ORTHO05D005488 7.0e-82 307.4 175 91.4
AL4G38670 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 2.0e-81 305.8 175 91.4
AT2G40780 Arabidopsis thaliana HOM05D004876 ORTHO05D005488 2.5e-79 298.9 175 88.0
CARHR135880 Cardamine hirsuta HOM05D004876 ORTHO05D005488 4.7e-78 294.7 178 86.5
Thhalv10017311m.g Eutrema salsugineum HOM05D004876 ORTHO05D005488 1.3e-75 286.6 169 87.0
BcaC02g12879 Brassica carinata HOM05D004876 ORTHO05D005488 1.1e-66 256.9 133 96.2
Aa31LG3G1350 Aethionema arabicum HOM05D004876 ORTHO05D005488 1.9e-66 256.1 168 78.0
BcaB01g03515 Brassica carinata HOM05D004876 ORTHO05D005488 4.1e-66 255.0 173 81.5
BcaB05g22749 Brassica carinata HOM05D004876 ORTHO05D005488 2.5e-63 245.7 133 94.0
THA.LOC104824370 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 5.2e-61 238.0 172 71.5
THA.LOC104803220 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 9.0e-53 210.7 173 64.2
QL08p065087 Quercus lobata HOM05D004876 ORTHO05D005488 7.9e-49 197.6 174 59.2
Duzib114G0677 Durio zibethinus HOM05D004876 ORTHO05D005488 1.3e-48 196.8 179 59.2
Phvul.009G042700 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 2.3e-48 196.1 172 59.9
CiPaw.02G093900 Carya illinoinensis HOM05D004876 ORTHO05D005488 3.0e-48 195.7 174 59.2
CsaV3_5G010740 Cucumis sativus L. HOM05D004876 ORTHO05D005488 8.7e-48 194.1 169 59.8
Prupe.2G265600 Prunus persica HOM05D004876 ORTHO05D005488 1.1e-47 193.7 172 59.9
CiPaw.04G175400 Carya illinoinensis HOM05D004876 ORTHO05D005488 1.9e-47 193.0 177 58.8
Phvul.005G185900 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 1.9e-47 193.0 172 59.3
THA.LOC104808402 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 3.3e-47 192.2 136 71.3
TPR.G13975 Trifolium pratense HOM05D004876 ORTHO05D005488 4.3e-47 191.8 170 57.6
ClCG07G004830 Citrullus lanatus HOM05D004876 ORTHO05D005488 5.6e-47 191.4 169 58.6
Lj1g0004349 Lotus japonicus HOM05D004876 ORTHO05D005488 1.6e-46 189.9 173 61.3
MD01G1169400 Malus domestica HOM05D004876 ORTHO05D005488 2.8e-46 189.1 168 58.3
PGR142G2846 Punica granatum HOM05D004876 ORTHO05D005488 2.8e-46 189.1 178 56.2
VMungo1309G0380 Vigna mungo HOM05D004876 ORTHO05D005488 3.7e-46 188.7 172 59.9
Atru.chr12.194 Acer truncatum HOM05D004876 ORTHO05D005488 4.8e-46 188.3 182 56.0
Cpa.g.sc128.23 Carica papaya HOM05D004876 ORTHO05D005488 4.8e-46 188.3 172 56.4
Lalb_Chr11g0067701 Lupinus albus HOM05D004876 ORTHO05D005488 8.1e-46 187.6 179 55.9
TWI09G0651 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 1.8e-45 186.4 183 54.6
TAR636G2293 Trochodendron aralioides HOM05D004876 ORTHO05D005488 1.8e-45 186.4 172 56.4
AUR62008150 Chenopodium quinoa HOM05D004876 ORTHO05D005488 2.4e-45 186.0 171 55.0
AUR62028732 Chenopodium quinoa HOM05D004876 ORTHO05D005488 2.4e-45 186.0 171 55.0
Potri.019G061200 Populus trichocarpa HOM05D004876 ORTHO05D005488 2.4e-45 186.0 177 59.3
MBI15_g39395_MAGBIO Magnolia biondii HOM05D004876 ORTHO05D005488 9.0e-45 184.1 166 58.4
PSO675G4155 Papaver somniferum HOM05D004876 ORTHO05D005488 9.0e-45 184.1 170 56.5
CDE07G1038 Ceratophyllum demersum HOM05D004876 ORTHO05D005488 9.9e-44 180.6 172 61.6
Glyma.06G141500 Glycine max HOM05D004876 ORTHO05D005488 1.3e-43 180.3 171 57.3
MELO3C020110.2 Cucumis melo HOM05D004876 ORTHO05D005488 1.7e-43 179.9 169 55.6
Sed0020097 Sechium edule HOM05D004876 ORTHO05D005488 2.2e-43 179.5 169 55.6
TPR.G28952 Trifolium pratense HOM05D004876 ORTHO05D005488 2.2e-43 179.5 170 55.9
Migut.F01232 Erythranthe guttata HOM05D004876 ORTHO05D005488 3.8e-43 178.7 172 54.1
FvH4_7g26120 Fragaria vesca HOM05D004876 ORTHO05D005488 1.1e-42 177.2 173 55.5
FAN10G2920 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.4e-42 176.8 176 55.1
PSO170G6098 Papaver somniferum HOM05D004876 ORTHO05D005488 7.1e-42 174.5 174 55.7
Psat5g069360 Pisum sativum HOM05D004876 ORTHO05D005488 1.2e-41 173.7 169 56.2
FAN12G2601 Fragaria x ananassa HOM05D004876 ORTHO05D005488 4.6e-41 171.8 168 56.5
Os03g0114200 Oryza sativa ssp. japonica HOM05D004876 ORTHO05D005488 4.6e-41 171.8 167 51.5
Thecc.10G185000 Theobroma cacao HOM05D004876 ORTHO05D005488 6.0e-41 171.4 179 51.4
FAN03G2458 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.0e-40 170.6 176 54.0
CANSAT64G2122 Cannabis sativa HOM05D004876 ORTHO05D005488 2.3e-40 169.5 184 51.6
HPP92_015433 Vanilla planifolia HOM05D004876 ORTHO05D005488 3.0e-40 169.1 159 56.0
ATR0733G227 Amborella trichopoda HOM05D004876 ORTHO05D005488 3.9e-40 168.7 172 54.1
FAN06G0183 Fragaria x ananassa HOM05D004876 ORTHO05D005488 3.9e-40 168.7 177 54.2
CANSAT64G1352 Cannabis sativa HOM05D004876 ORTHO05D005488 6.7e-40 167.9 184 51.1
Manes.10G044800 Manihot esculenta HOM05D004876 ORTHO05D005488 1.5e-39 166.8 173 54.3
TWI53G0120 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 1.5e-39 166.8 178 52.2
ATR1127G178 Amborella trichopoda HOM05D004876 ORTHO05D005488 5.6e-39 164.9 172 52.9
RcHm_v2.0_Chr1g0372561 Rosa chinensis HOM05D004876 ORTHO05D005488 9.6e-39 164.1 183 52.5
vmacro06902 Vaccinium macrocarpon HOM05D004876 ORTHO05D005488 2.1e-38 162.9 182 50.5
FvH4_4g04970 Fragaria vesca HOM05D004876 ORTHO05D005488 1.4e-37 160.2 187 50.8
Gohir.D10G184200 Gossypium hirsutum HOM05D004876 ORTHO05D005488 2.4e-37 159.5 181 49.7
Gorai.011G206400 Gossypium raimondii HOM05D004876 ORTHO05D005488 2.4e-37 159.5 181 49.7
C03p81600 Brassica napus HOM05D004876 ORTHO05D005488 3.1e-37 159.1 103 78.6
BolC3t20430H Brassica oleracea HOM05D004876 ORTHO05D005488 3.1e-37 159.1 103 78.6
Zm00001eb000910 Zea mays HOM05D004876 ORTHO05D005488 3.1e-37 159.1 173 51.4
Aqoxy6G02070 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 6.9e-37 157.9 170 50.6
Gohir.A10G177600 Gossypium hirsutum HOM05D004876 ORTHO05D005488 2.0e-36 156.4 181 48.6
EL10Ac5g10661 Beta vulgaris HOM05D004876 ORTHO05D005488 3.4e-36 155.6 173 49.1
Ca_29506_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 3.4e-36 155.6 170 50.6
C01p26050 Brassica napus HOM05D004876 ORTHO05D005488 4.5e-36 155.2 98 83.7
Aqoxy2G01672 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 7.6e-36 154.5 171 50.3
COL.COLO4_19475 Corchorus olitorius HOM05D004876 ORTHO05D005488 7.6e-36 154.5 182 49.5
Nitab4.5_0006356g0050 Nicotiana tabacum HOM05D004876 ORTHO05D005488 6.5e-35 151.4 172 48.3
Nitab4.5_0000171g0270 Nicotiana tabacum HOM05D004876 ORTHO05D005488 8.4e-35 151.0 172 47.1
Haze_17370 Corylus avellana HOM05D004876 ORTHO05D005488 1.1e-34 150.6 172 49.4
Migut.A00831 Erythranthe guttata HOM05D004876 ORTHO05D005488 1.4e-34 150.2 164 47.6
Peaxi162Scf00073g02225 Petunia axillaris HOM05D004876 ORTHO05D005488 2.5e-34 149.4 171 46.8
Sopen05g030710 Solanum pennellii HOM05D004876 ORTHO05D005488 4.2e-34 148.7 166 50.6
PGSC0003DMG400011645 Solanum tuberosum HOM05D004876 ORTHO05D005488 5.5e-34 148.3 169 50.3
HanXRQChr14g0460541 Helianthus annuus HOM05D004876 ORTHO05D005488 9.3e-34 147.5 172 47.7
Ca_16858_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 1.6e-33 146.7 187 46.5
Ca_29868_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 1.6e-33 146.7 148 54.1
Solyc05g052180.3 Solanum lycopersicum HOM05D004876 ORTHO05D005488 2.7e-33 146.0 159 49.7
Ciclev10032334m.g Citrus clementina HOM05D004876 ORTHO05D005488 6.0e-33 144.8 155 51.6
Cc02_g05210 Coffea canephora HOM05D004876 ORTHO05D005488 6.0e-33 144.8 171 47.4
FAN17G0734 Fragaria x ananassa HOM05D004876 ORTHO05D005488 6.0e-33 144.8 242 40.9
Rhsim03G0153600 Rhododendron simsii HOM05D004876 ORTHO05D005488 6.0e-33 144.8 180 46.7
CSS0007534 Camellia sinensis var. sinensis HOM05D004876 ORTHO05D005488 7.9e-33 144.4 174 46.6
CiPaw.04G175300 Carya illinoinensis HOM05D004876 ORTHO05D005488 1.3e-32 143.7 104 68.3
PGR142G0395 Punica granatum HOM05D004876 ORTHO05D005488 3.0e-32 142.5 163 44.8
Peaxi162Scf00167g01129 Petunia axillaris HOM05D004876 ORTHO05D005488 3.9e-32 142.1 145 52.4
Sabra19G0074800 Salix brachista HOM05D004876 ORTHO05D005488 3.9e-32 142.1 112 65.2
Dinv37250 Davidia involucrata HOM05D004876 ORTHO05D005488 8.7e-32 141.0 171 46.2
CAN.G1229.8 Capsicum annuum HOM05D004876 ORTHO05D005488 1.1e-31 140.6 171 46.2
Duzib106G1237 Durio zibethinus HOM05D004876 ORTHO05D005488 1.1e-31 140.6 172 47.1
ECA247G1702 Erigeron canadensis HOM05D004876 ORTHO05D008274 1.1e-31 140.6 151 51.7
SEGI_18121 Sequoiadendron giganteum HOM05D004876 ORTHO05D005488 1.1e-31 140.6 175 45.7
Lsat_1_v5_gn_5_104800 Lactuca sativa HOM05D004876 ORTHO05D005488 1.5e-31 140.2 162 49.4
Aqoxy5G02193 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 1.9e-31 139.8 135 54.8
Sc10g0003050 Simmondsia chinensis HOM05D004876 ORTHO05D005488 5.7e-31 138.3 129 55.8
unitig_736.g22953 Utricularia gibba HOM05D004876 ORTHO05D005488 7.4e-31 137.9 169 45.6
Lj6g0009237 Lotus japonicus HOM05D004876 ORTHO05D005488 1.3e-30 137.1 173 48.0
arahy.Tifrunner.gnm1.ann1.58ULDB Arachis hypogaea HOM05D004876 ORTHO05D005488 1.6e-30 136.7 182 44.5
MSTRG.8381 Avicennia marina HOM05D004876 ORTHO05D005488 2.2e-30 136.3 175 45.1
Oeu006067.1 Olea europaea HOM05D004876 ORTHO05D005488 8.2e-30 134.4 171 45.0
Rhsim04G0113200 Rhododendron simsii HOM05D004876 ORTHO05D005488 2.4e-29 132.9 181 44.8
Ah.11g051130 Amaranthus hybridus HOM05D004876 ORTHO05D005488 4.1e-29 132.1 160 46.2
Mapoly0014s0200 Marchantia polymorpha HOM05D004876 ORTHO05D005488 9.0e-29 131.0 177 41.8
Medtr3g093790 Medicago truncatula HOM05D004876 ORTHO05D005488 9.0e-29 131.0 155 47.1
SGA_v2.0_scaffold2G00887 Striga asiatica HOM05D004876 ORTHO05D005488 1.3e-27 127.1 174 42.5
GSVIVG01038577001 Vitis vinifera HOM05D004876 ORTHO05D005488 6.5e-27 124.8 111 56.8
Dinv21858 Davidia involucrata HOM05D004876 ORTHO05D005488 1.1e-26 124.0 106 57.5
SalBow7G3110 Salvia bowleyana HOM05D004876 ORTHO05D005488 4.2e-26 122.1 176 40.3
Eucgr.G03147 Eucalyptus grandis HOM05D004876 ORTHO05D005488 9.3e-26 120.9 174 40.2
Lsat_1_v5_gn_2_126741 Lactuca sativa HOM05D004876 ORTHO05D005488 4.6e-25 118.6 162 43.8
Nitab4.5_0008902g0030 Nicotiana tabacum HOM05D004876 ORTHO05D005488 1.8e-24 116.7 172 44.8
Lj8A52T23 Lonicera japonica HOM05D004876 ORTHO05D005488 2.3e-24 116.3 106 55.7
Nn2g10267 Nelumbo nucifera HOM05D004876 ORTHO05D005488 8.7e-24 114.4 81 69.1
Pp3c16_8280 Physcomitrium patens HOM05D004876 ORTHO05D005488 3.7e-22 109.0 187 36.4
AL4G14440 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 2.4e-21 106.3 62 83.9
AagrBONN_evm.TU.Sc2ySwM_368.2679 Anthoceros agrestis HOM05D004876 ORTHO05D005488 1.2e-20 104.0 164 34.1
Sopen03g025590 Solanum pennellii HOM05D004876 ORTHO05D005488 1.7e-19 100.1 106 46.2
Actinidia13638 Actinidia chinensis HOM05D004876 ORTHO05D005488 2.2e-19 99.8 127 44.9
PGSC0003DMG400020604 Solanum tuberosum HOM05D004876 ORTHO05D005488 6.5e-19 98.2 106 45.3
TPR.G24790 Trifolium pratense HOM05D004876 ORTHO05D005488 3.2e-18 95.9 75 62.7
BcaC09g50389 Brassica carinata HOM05D015100 ORTHO05D005488 5.1e-16 88.6 64 79.7
BolC9t53790H Brassica oleracea HOM05D015100 ORTHO05D005488 1.5e-15 87.0 64 78.1
BolC1t02550H Brassica oleracea HOM05D015100 ORTHO05D005488 2.0e-15 86.7 64 78.1
Nn1g06656 Nelumbo nucifera HOM05D004876 ORTHO05D005488 2.0e-15 86.7 106 50.0
BolC9t55552H Brassica oleracea HOM05D015100 ORTHO05D005488 2.6e-15 86.3 63 74.6
BraA05t19187Z Brassica rapa HOM05D015100 ORTHO05D005488 2.6e-15 86.3 98 54.1
BolC1t01821H Brassica oleracea HOM05D015100 ORTHO05D005488 3.3e-15 85.9 63 74.6
HanXRQChr07g0204961 Helianthus annuus HOM05D004876 ORTHO05D005488 9.7e-15 84.3 111 44.1
Thhalv10016561m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 1.2e-12 77.4 59 71.2
BraA03t11517Z Brassica rapa HOM05D000171 ORTHO05D000101 1.1e-10 70.9 39 89.7
Cre03.g155800 Chlamydomonas reinhardtii HOM05D004876 ORTHO05D005488 4.2e-10 68.9 94 38.3
MCO11G196 Micromonas commoda HOM05D004876 ORTHO05D005488 1.2e-09 67.4 120 32.5
AT2G40910 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 1.0e-08 64.3 54 63.0
C03p27210 Brassica napus HOM05D015100 ORTHO05D031876 3.9e-08 62.4 67 62.7
BolC3t15102H Brassica oleracea HOM05D015100 ORTHO05D031876 3.9e-08 62.4 67 62.7
BcaC01g05378 Brassica carinata HOM05D015100 ORTHO05D031876 1.1e-07 60.8 69 59.4
Carub.0004s2322 Capsella rubella HOM05D000171 ORTHO05D000101 3.3e-07 59.3 59 57.6
AL4G38850 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.3e-06 57.4 56 62.5
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 2.2e-06 56.6 139 32.4


User provided reference genes

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