Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC4t28061H Brassica oleracea HOM05D003265 ORTHO05D003819 3.6e-256 887.9 489 100.0
BcaC02g07549 Brassica carinata HOM05D003265 ORTHO05D003819 4.9e-237 824.3 490 95.1
C04p65680 Brassica napus HOM05D003265 ORTHO05D003819 1.5e-201 706.4 511 81.0
A04p28340 Brassica napus HOM05D003265 ORTHO05D003819 5.3e-199 698.0 508 81.1
BraA04t18315Z Brassica rapa HOM05D003265 ORTHO05D003819 1.2e-190 670.2 507 78.9
BcaB06g28974 Brassica carinata HOM05D003265 ORTHO05D003819 1.3e-165 587.0 558 67.9
Sp4g19390 Schrenkiella parvula HOM05D003265 ORTHO05D003819 7.0e-143 511.5 599 57.3
Thhalv10016413m.g Eutrema salsugineum HOM05D003265 ORTHO05D003819 2.2e-136 490.0 599 57.1
AL4G33420 Arabidopsis lyrata HOM05D003265 ORTHO05D003819 1.7e-104 384.0 575 51.7
Carub.0004s1895 Capsella rubella HOM05D003265 ORTHO05D003819 2.2e-104 383.6 567 52.0
AT2G37070 Arabidopsis thaliana HOM05D003265 ORTHO05D003819 3.2e-95 353.2 564 48.9
CARHR131570 Cardamine hirsuta HOM05D003265 ORTHO05D003819 2.1e-91 340.5 621 45.1
Aa31LG5G22370 Aethionema arabicum HOM05D003265 ORTHO05D003819 1.1e-79 301.6 564 45.4
AL5G34230 Arabidopsis lyrata HOM05D003265 ORTHO05D003819 6.7e-69 265.8 583 39.8
Thhalv10010259m.g Eutrema salsugineum HOM05D003265 ORTHO05D003819 1.2e-62 245.0 583 38.8
Carub.0005s1987 Capsella rubella HOM05D003265 ORTHO05D003819 2.1e-62 244.2 586 37.9
AT3G53320 Arabidopsis thaliana HOM05D003265 ORTHO05D003819 1.0e-61 241.9 493 40.2
CARHR163240 Cardamine hirsuta HOM05D003265 ORTHO05D003819 4.3e-60 236.5 588 37.9
Sp5g09010 Schrenkiella parvula HOM05D003265 ORTHO05D003819 2.4e-58 230.7 583 37.9
THA.LOC104806495 Tarenaya hassleriana HOM05D003265 ORTHO05D003819 2.2e-56 224.2 605 35.9
Aa31LG10G8510 Aethionema arabicum HOM05D003265 ORTHO05D003819 1.9e-55 221.1 599 36.1
BcaB01g00290 Brassica carinata HOM05D003265 ORTHO05D003819 1.6e-54 218.0 488 40.2
A09p46340 Brassica napus HOM05D003265 ORTHO05D003819 1.2e-49 201.8 479 43.0
BraA09t40099Z Brassica rapa HOM05D003265 ORTHO05D003819 4.5e-49 199.9 479 43.0
BcaC07g39697 Brassica carinata HOM05D003265 ORTHO05D003819 1.0e-45 188.7 480 41.9
BolC8t50462H Brassica oleracea HOM05D003265 ORTHO05D003819 1.0e-45 188.7 480 41.9
C08p28530 Brassica napus HOM05D003265 ORTHO05D003819 2.6e-44 184.1 480 41.2
Atru.chr8.2556 Acer truncatum HOM05D003265 ORTHO05D003819 3.5e-25 120.6 540 30.7
Prupe.6G241300 Prunus persica HOM05D003265 ORTHO05D003819 1.7e-24 118.2 528 31.6
TWI74G1096 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 2.2e-24 117.9 531 30.9
MD04G1104400 Malus domestica HOM05D003265 ORTHO05D003819 2.9e-24 117.5 546 29.5
COL.COLO4_27082 Corchorus olitorius HOM05D003265 ORTHO05D003819 6.5e-24 116.3 552 29.9
Duzib128G1251 Durio zibethinus HOM05D003265 ORTHO05D003819 8.5e-24 115.9 539 29.3
Haze_20650 Corylus avellana HOM05D003265 ORTHO05D003819 2.5e-23 114.4 445 30.8
Thecc.05G053900 Theobroma cacao HOM05D003265 ORTHO05D003819 2.5e-23 114.4 569 29.5
Ciclev10011133m.g Citrus clementina HOM05D003265 ORTHO05D003819 1.6e-22 111.7 602 31.4
Dinv37252 Davidia involucrata HOM05D003265 ORTHO05D003819 2.1e-22 111.3 446 30.3
PGR004G1993 Punica granatum HOM05D000855 ORTHO05D002321 1.0e-21 109.0 514 29.4
Eucgr.A01175 Eucalyptus grandis HOM05D003265 ORTHO05D003819 1.4e-21 108.6 510 29.2
Cfa017508 Carpinus fangiana HOM05D003265 ORTHO05D003819 1.8e-21 108.2 444 31.1
CiPaw.10G137500 Carya illinoinensis HOM05D003265 ORTHO05D003819 1.2e-20 105.5 500 30.4
MD12G1124300 Malus domestica HOM05D003265 ORTHO05D003819 4.4e-20 103.6 543 29.1
Gohir.D01G205900 Gossypium hirsutum HOM05D003265 ORTHO05D003819 9.8e-20 102.4 550 29.5
Gohir.A01G217200 Gossypium hirsutum HOM05D003265 ORTHO05D003819 1.3e-19 102.1 512 30.3
Gorai.002G250300 Gossypium raimondii HOM05D003265 ORTHO05D003819 1.3e-19 102.1 515 29.7
PGSC0003DMG400001737 Solanum tuberosum HOM05D003265 ORTHO05D003819 2.8e-19 100.9 487 30.6
FvH4_6g15330 Fragaria vesca HOM05D003265 ORTHO05D003819 4.9e-19 100.1 602 28.1
CsaV3_3G035550 Cucumis sativus L. HOM05D003265 ORTHO05D003819 8.3e-19 99.4 486 29.4
Nn2g10657 Nelumbo nucifera HOM05D003265 ORTHO05D003819 8.3e-19 99.4 285 36.1
QL07p045275 Quercus lobata HOM05D003265 ORTHO05D003819 1.8e-18 98.2 446 29.8
VMungo1383G3553 Vigna mungo HOM05D003265 ORTHO05D003819 4.1e-18 97.1 444 32.9
MSTRG.26726 Avicennia marina HOM05D003265 ORTHO05D003819 9.2e-18 95.9 562 29.2
CSS0020316 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 9.2e-18 95.9 513 30.4
ECA248G3421 Erigeron canadensis HOM05D002706 ORTHO05D003253 9.2e-18 95.9 493 27.8
Potri.016G085600 Populus trichocarpa HOM05D003265 ORTHO05D003819 9.2e-18 95.9 519 29.9
Lsat_1_v5_gn_1_53881 Lactuca sativa HOM05D003265 ORTHO05D003819 2.7e-17 94.4 393 31.0
FAN05G5644 Fragaria x ananassa HOM05D003265 ORTHO05D003819 5.9e-17 93.2 628 27.9
MELO3C009314.2 Cucumis melo HOM05D003265 ORTHO05D003819 7.8e-17 92.8 491 28.9
Psat3g044800 Pisum sativum HOM05D003265 ORTHO05D003819 7.8e-17 92.8 518 30.3
RcHm_v2.0_Chr3g0468801 Rosa chinensis HOM05D003265 ORTHO05D003819 7.8e-17 92.8 598 27.9
RhsimUnG0118100 Rhododendron simsii HOM05D003265 ORTHO05D003819 1.0e-16 92.4 512 29.5
TWI77G0315 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 1.0e-16 92.4 565 27.4
Gohir.D09G147700 Gossypium hirsutum HOM05D003265 ORTHO05D003819 1.3e-16 92.0 445 32.6
Rhsim04G0151400 Rhododendron simsii HOM05D003265 ORTHO05D003819 1.7e-16 91.7 490 30.4
Glyma.03G177900 Glycine max HOM05D003265 ORTHO05D003819 2.9e-16 90.9 520 31.3
GSVIVG01025624001 Vitis vinifera HOM05D000855 ORTHO05D002321 2.9e-16 90.9 184 39.1
FAN05G5023 Fragaria x ananassa HOM05D003265 ORTHO05D003819 3.8e-16 90.5 561 28.5
vmacro20061 Vaccinium macrocarpon HOM05D003265 ORTHO05D003819 3.8e-16 90.5 238 33.2
Gorai.006G168800 Gossypium raimondii HOM05D003265 ORTHO05D003819 5.0e-16 90.1 528 30.7
Medtr7g100700 Medicago truncatula HOM05D003265 ORTHO05D003819 8.6e-16 89.4 498 30.3
Manes.08G003400 Manihot esculenta HOM05D003265 ORTHO05D003819 1.1e-15 89.0 524 30.7
Sopen09g002240 Solanum pennellii HOM05D003265 ORTHO05D003819 1.9e-15 88.2 445 28.8
Lalb_Chr20g0112961 Lupinus albus HOM05D003265 ORTHO05D003819 2.5e-15 87.8 453 30.5
Solyc09g007340.4 Solanum lycopersicum HOM05D000855 ORTHO05D002321 2.5e-15 87.8 517 29.2
Migut.L01659 Erythranthe guttata HOM05D003265 ORTHO05D003819 3.3e-15 87.4 527 28.7
Actinidia13106 Actinidia chinensis HOM05D003265 ORTHO05D003819 9.5e-15 85.9 146 40.4
Oeu026065.2 Olea europaea HOM05D003265 ORTHO05D003819 1.2e-14 85.5 109 47.7
Glyma.19G178700 Glycine max HOM05D003265 ORTHO05D003819 1.6e-14 85.1 400 32.8
Lalb_Chr01g0019031 Lupinus albus HOM05D003265 ORTHO05D003819 2.1e-14 84.7 456 32.0
Sabra16G0092200 Salix brachista HOM05D003265 ORTHO05D003819 2.8e-14 84.3 496 27.4
SalBow4G0859 Salvia bowleyana HOM05D003265 ORTHO05D003819 1.4e-13 82.0 567 27.5
EL10Ac7g17351 Beta vulgaris HOM05D003265 ORTHO05D003819 3.0e-13 80.9 344 32.8
ClCG10G020560 Citrullus lanatus HOM05D003265 ORTHO05D003819 3.0e-13 80.9 473 28.3
Potri.006G131650 Populus trichocarpa HOM05D003265 ORTHO05D003819 3.0e-13 80.9 247 34.0
unitig_746.g26760 Utricularia gibba HOM05D003265 ORTHO05D003819 3.0e-13 80.9 127 46.5
Nitab4.5_0003895g0030 Nicotiana tabacum HOM05D000855 ORTHO05D002321 4.0e-13 80.5 550 27.8
TPR.G30247 Trifolium pratense HOM05D003265 ORTHO05D003819 4.0e-13 80.5 493 28.8
Ah.15g092100 Amaranthus hybridus HOM05D003265 ORTHO05D003819 5.2e-13 80.1 584 28.3
Ca_08825_v3 Cicer arietinum L. HOM05D003265 ORTHO05D003819 5.2e-13 80.1 483 28.2
Duzib106G1563 Durio zibethinus HOM05D003265 ORTHO05D003819 6.8e-13 79.7 403 28.0
Nitab4.5_0001142g0090 Nicotiana tabacum HOM05D000855 ORTHO05D002321 6.8e-13 79.7 515 29.5
Hma1.2p1_0111F.1_g053890 Hydrangea macrophylla HOM05D003265 ORTHO05D003819 8.9e-13 79.3 164 37.8
TPR.G36939 Trifolium pratense HOM05D003265 ORTHO05D003819 8.9e-13 79.3 452 31.2
Phvul.001G174800 Phaseolus vulgaris HOM05D003265 ORTHO05D003819 1.2e-12 79.0 529 28.9
HanXRQChr01g0027471 Helianthus annuus HOM05D003265 ORTHO05D003819 2.0e-12 78.2 534 25.1
HanXRQChr11g0350071 Helianthus annuus HOM05D003265 ORTHO05D003819 2.6e-12 77.8 403 32.0
DCAR_017729 Daucus carota HOM05D003265 ORTHO05D003819 3.4e-12 77.4 469 29.2
Nn2g12994 Nelumbo nucifera HOM05D003265 ORTHO05D003819 3.4e-12 77.4 446 27.6
Duzib106G1383 Durio zibethinus HOM05D003265 ORTHO05D003819 5.7e-12 76.6 613 28.9
Lj1g0023124 Lotus japonicus HOM05D003265 ORTHO05D003819 7.5e-12 76.3 462 31.2
arahy.Tifrunner.gnm1.ann1.1ZS95I Arachis hypogaea HOM05D003265 ORTHO05D003819 9.8e-12 75.9 472 32.0
Dinv35709 Davidia involucrata HOM05D003265 ORTHO05D003819 3.7e-11 73.9 505 27.3
MSTRG.10296 Avicennia marina HOM05D003265 ORTHO05D003819 6.4e-11 73.2 568 28.0
Sabra06G0103300 Salix brachista HOM05D003265 ORTHO05D003819 3.2e-10 70.9 510 26.7
TAR633G0548 Trochodendron aralioides HOM05D003265 ORTHO05D003819 3.2e-10 70.9 269 32.0
FAN14G0893 Fragaria x ananassa HOM05D000009 ORTHO05D003819 5.4e-10 70.1 637 25.4
Psat6g070560 Pisum sativum HOM05D003265 ORTHO05D003819 5.4e-10 70.1 440 29.3
AUR62040021 Chenopodium quinoa HOM05D003265 ORTHO05D003819 7.0e-10 69.7 594 25.8
Cc06_g03550 Coffea canephora HOM05D003265 ORTHO05D003819 9.2e-10 69.3 565 24.2
Manes.10G042100 Manihot esculenta HOM05D003265 ORTHO05D003819 1.6e-09 68.6 448 28.1
AUR62042920 Chenopodium quinoa HOM05D003265 ORTHO05D003819 3.5e-09 67.4 567 25.4
arahy.Tifrunner.gnm1.ann1.H355B7 Arachis hypogaea HOM05D003265 ORTHO05D003819 7.8e-09 66.2 475 29.1
Medtr1g066870 Medicago truncatula HOM05D003265 ORTHO05D003819 7.8e-09 66.2 605 27.4
Oeu026844.1 Olea europaea HOM05D003265 ORTHO05D003819 7.8e-09 66.2 506 26.1
Sc20g0004060 Simmondsia chinensis HOM05D003265 ORTHO05D003819 7.8e-09 66.2 594 25.4
PSO339G3745 Papaver somniferum HOM05D003265 ORTHO05D003819 1.0e-08 65.9 386 27.2
Sed0024874 Sechium edule HOM05D003265 ORTHO05D003819 1.0e-08 65.9 430 27.7
Lj1A924T53 Lonicera japonica HOM05D003265 ORTHO05D003819 1.3e-08 65.5 371 28.6
TAR623G0684 Trochodendron aralioides HOM05D003265 ORTHO05D003819 1.3e-08 65.5 610 27.4
Gorai.013G024900 Gossypium raimondii HOM05D003265 ORTHO05D003819 2.3e-08 64.7 501 25.3
Sed0014651 Sechium edule HOM05D003265 ORTHO05D003819 3.0e-08 64.3 401 28.2
Gohir.D11G344100 Gossypium hirsutum HOM05D003265 ORTHO05D003819 3.9e-08 63.9 425 28.0
Gorai.007G374500 Gossypium raimondii HOM05D003265 ORTHO05D003819 3.9e-08 63.9 425 28.0
Sabra19G0043100 Salix brachista HOM05D003265 ORTHO05D010313 3.9e-08 63.9 101 43.6
Sabra19G0046300 Salix brachista HOM05D003265 ORTHO05D010313 3.9e-08 63.9 101 43.6
Aqoxy3G02606 Aquilegia oxysepala HOM05D003265 ORTHO05D003819 6.6e-08 63.2 573 25.3
Lj5g0012648 Lotus japonicus HOM05D003265 ORTHO05D003819 8.6e-08 62.8 536 28.5
Gohir.D13G022100 Gossypium hirsutum HOM05D003265 ORTHO05D003819 1.1e-07 62.4 492 25.8
Gohir.A11G325100 Gossypium hirsutum HOM05D003265 ORTHO05D003819 1.5e-07 62.0 421 27.3
SGA_v2.0_scaffold35G14161 Striga asiatica HOM05D003265 ORTHO05D003819 1.5e-07 62.0 588 25.2
CiPaw.01G276700 Carya illinoinensis HOM05D003265 ORTHO05D003819 1.9e-07 61.6 381 27.3
Potri.008G044500 Populus trichocarpa HOM05D003265 ORTHO05D003819 1.9e-07 61.6 442 26.9
QL08p056892 Quercus lobata HOM05D003265 ORTHO05D003819 1.9e-07 61.6 493 26.2
Dinv04678 Davidia involucrata HOM05D003265 ORTHO05D003819 2.5e-07 61.2 561 25.3
Sed0003387 Sechium edule HOM05D003265 ORTHO05D003819 3.3e-07 60.8 472 27.8
SGA_v2.0_scaffold94G28667 Striga asiatica HOM05D003265 ORTHO05D003819 3.3e-07 60.8 458 25.8
CsaV3_5G026000 Cucumis sativus L. HOM05D003265 ORTHO05D003819 5.6e-07 60.1 481 23.9
Oeu035141.2 Olea europaea HOM05D003265 ORTHO05D003819 5.6e-07 60.1 622 24.6
MELO3C025500.2 Cucumis melo HOM05D003265 ORTHO05D003819 7.3e-07 59.7 472 24.2
Prupe.2G219100 Prunus persica HOM05D003265 ORTHO05D003819 9.5e-07 59.3 338 26.6
MD07G1179700 Malus domestica HOM05D003265 ORTHO05D003819 1.6e-06 58.5 260 28.5
FAN09G0144 Fragaria x ananassa HOM05D003265 ORTHO05D003819 2.1e-06 58.2 646 26.9
Actinidia05272 Actinidia chinensis HOM05D003265 ORTHO05D003819 2.8e-06 57.8 55 50.9
Gohir.A13G021500 Gossypium hirsutum HOM05D003265 ORTHO05D003819 4.7e-06 57.0 496 25.0
Hund20166 Selenicereus undatus HOM05D003265 ORTHO05D003819 4.7e-06 57.0 610 24.3
Rhsim03G0122700 Rhododendron simsii HOM05D003265 ORTHO05D003819 6.2e-06 56.6 481 26.6
CSS0006813 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 8.0e-06 56.2 240 32.5
ClCG09G020420 Citrullus lanatus HOM05D003265 ORTHO05D003819 8.0e-06 56.2 381 26.2


User provided reference genes

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