Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC4t27191H Brassica oleracea HOM05D002737 ORTHO05D005828 1.5e-114 416.8 308 100.0
A04p20820 Brassica napus HOM05D002737 ORTHO05D005828 2.2e-102 376.3 308 89.9
BraA04t17655Z Brassica rapa HOM05D002737 ORTHO05D005828 2.2e-102 376.3 308 89.9
BcaC02g08257 Brassica carinata HOM05D002737 ORTHO05D005828 2.9e-94 349.4 308 89.9
C04p56640 Brassica napus HOM05D002737 ORTHO05D005828 2.9e-94 349.4 308 89.9
BcaB06g28137 Brassica carinata HOM05D002737 ORTHO05D005828 1.6e-84 317.0 314 68.5
Sp4g10090 Schrenkiella parvula HOM05D002737 ORTHO05D005828 1.9e-82 310.1 318 75.2
AL4G21200 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 1.0e-75 287.7 331 58.6
AT2G27285 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 2.3e-75 286.6 326 60.7
Carub.0004s0789 Capsella rubella HOM05D002737 ORTHO05D005828 5.1e-75 285.4 327 61.2
Aa31LG5G8680 Aethionema arabicum HOM05D002737 ORTHO05D005828 8.2e-73 278.1 310 60.3
Thhalv10002052m.g Eutrema salsugineum HOM05D002737 ORTHO05D005828 5.9e-71 271.9 203 76.8
CARHR119810 Cardamine hirsuta HOM05D002737 ORTHO05D005828 3.8e-70 269.2 326 60.4
AL4G21190 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 1.8e-64 250.4 323 55.4
Carub.0004s0788 Capsella rubella HOM05D002737 ORTHO05D005828 2.4e-64 250.0 310 50.6
SGA_v2.0_scaffold7G03980 Striga asiatica HOM05D002737 ORTHO05D005828 1.1e-61 241.1 312 49.0
THA.LOC104826443 Tarenaya hassleriana HOM05D002737 ORTHO05D005828 3.2e-61 239.6 317 55.8
EL10Ac7g17115 Beta vulgaris HOM05D002737 ORTHO05D005828 9.4e-61 238.0 316 49.7
FAN19G0045 Fragaria x ananassa HOM05D002737 ORTHO05D005828 1.8e-59 233.8 316 48.7
FAN23G1354 Fragaria x ananassa HOM05D002737 ORTHO05D005828 1.8e-59 233.8 316 48.7
FvH4_1g21730 Fragaria vesca HOM05D002737 ORTHO05D005828 6.7e-59 231.9 316 48.4
FAN26G0444 Fragaria x ananassa HOM05D002737 ORTHO05D005828 2.0e-58 230.3 315 48.3
AT2G27280 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 3.3e-58 229.6 318 54.7
SGA_v2.0_scaffold114G31961 Striga asiatica HOM05D002737 ORTHO05D005828 3.3e-58 229.6 310 48.1
Manes.01G182101 Manihot esculenta HOM05D002737 ORTHO05D005828 4.8e-57 225.7 310 46.8
Dinv17085 Davidia involucrata HOM05D002737 ORTHO05D005828 6.3e-57 225.3 307 45.9
GSVIVG01036054001 Vitis vinifera HOM05D002737 ORTHO05D005828 6.3e-57 225.3 203 63.5
Prupe.6G178500 Prunus persica HOM05D002737 ORTHO05D005828 8.2e-57 224.9 203 62.1
unitig_88.g27805 Utricularia gibba HOM05D002737 ORTHO05D002121 1.1e-56 224.6 308 46.8
Duzib150G0779 Durio zibethinus HOM05D002737 ORTHO05D005828 1.8e-56 223.8 315 48.6
ClCG01G011660 Citrullus lanatus HOM05D002737 ORTHO05D005828 2.4e-56 223.4 325 44.6
MELO3C003924.2 Cucumis melo HOM05D002737 ORTHO05D005828 2.4e-56 223.4 315 44.8
Solyc11g068870.2 Solanum lycopersicum HOM05D002737 ORTHO05D005828 4.1e-56 222.6 313 46.3
Sopen11g027560 Solanum pennellii HOM05D002737 ORTHO05D005828 4.1e-56 222.6 313 46.3
CsaV3_2G009130 Cucumis sativus L. HOM05D002737 ORTHO05D005828 5.3e-56 222.2 322 45.0
TWI77G0520 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 5.3e-56 222.2 313 47.0
Sc12g0004790 Simmondsia chinensis HOM05D002737 ORTHO05D005828 7.0e-56 221.9 324 45.4
CSS0011545 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 9.1e-56 221.5 309 46.3
CAN.G745.41 Capsicum annuum HOM05D002737 ORTHO05D005828 9.1e-56 221.5 316 45.6
MSTRG.21020 Avicennia marina HOM05D002737 ORTHO05D005828 1.2e-55 221.1 314 46.2
PGSC0003DMG400019621 Solanum tuberosum HOM05D002737 ORTHO05D005828 1.6e-55 220.7 313 46.0
Nitab4.5_0000893g0040 Nicotiana tabacum HOM05D002737 ORTHO05D005828 2.6e-55 219.9 307 45.3
Hund18792 Selenicereus undatus HOM05D002737 ORTHO05D005828 2.6e-55 219.9 205 62.0
Migut.D02412 Erythranthe guttata HOM05D002737 ORTHO05D005828 3.5e-55 219.5 206 61.7
Nitab4.5_0001135g0150 Nicotiana tabacum HOM05D002737 ORTHO05D005828 4.5e-55 219.2 309 45.3
CSS0011939 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 1.3e-54 217.6 309 46.6
TWI79G0303 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 8.5e-54 214.9 311 45.3
Sabra15G0046000 Salix brachista HOM05D002737 ORTHO05D005828 1.1e-53 214.5 308 55.8
Sabra15G0048200 Salix brachista HOM05D002737 ORTHO05D005828 1.1e-53 214.5 308 55.8
RcHm_v2.0_Chr2g0115601 Rosa chinensis HOM05D002737 ORTHO05D005828 1.9e-53 213.8 315 50.5
Thecc.09G275600 Theobroma cacao HOM05D002737 ORTHO05D005828 1.9e-53 213.8 315 51.4
Duzib168G0210 Durio zibethinus HOM05D002737 ORTHO05D005828 2.5e-53 213.4 312 47.8
Gohir.D07G115800 Gossypium hirsutum HOM05D002737 ORTHO05D005828 2.5e-53 213.4 312 46.8
Ah.10g032410 Amaranthus hybridus HOM05D002737 ORTHO05D005828 4.2e-53 212.6 349 42.1
ECA248G3131 Erigeron canadensis HOM05D002737 ORTHO05D005828 4.7e-52 209.1 308 46.1
Sed0023461 Sechium edule HOM05D002737 ORTHO05D005828 4.7e-52 209.1 204 55.9
Hma1.2p1_0793F.1_g218640 Hydrangea macrophylla HOM05D002737 ORTHO05D005828 6.1e-52 208.8 309 45.6
Actinidia07271 Actinidia chinensis HOM05D002737 ORTHO05D005828 1.0e-51 208.0 308 43.2
CANSAT64G0180 Cannabis sativa HOM05D002737 ORTHO05D005828 1.0e-51 208.0 306 45.4
Lj7A589T65 Lonicera japonica HOM05D002737 ORTHO05D005828 1.4e-51 207.6 311 44.4
Sabra15G0059900 Salix brachista HOM05D002737 ORTHO05D005828 1.4e-51 207.6 315 54.6
Rhsim13G0195300 Rhododendron simsii HOM05D002737 ORTHO05D005828 1.8e-51 207.2 312 50.0
Gohir.A07G112300 Gossypium hirsutum HOM05D002737 ORTHO05D005828 2.3e-51 206.8 312 45.2
Lsat_1_v5_gn_5_176321 Lactuca sativa HOM05D002737 ORTHO05D005828 2.3e-51 206.8 310 45.8
Oeu049293.2 Olea europaea HOM05D002737 ORTHO05D005828 2.3e-51 206.8 353 39.9
DCAR_003399 Daucus carota HOM05D002737 ORTHO05D005828 4.0e-51 206.1 309 45.3
PGR119G1771 Punica granatum HOM05D002737 ORTHO05D005828 5.2e-51 205.7 323 47.4
vmacro06935 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 5.2e-51 205.7 308 45.8
AT1G55928 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 6.7e-51 205.3 236 55.5
vmacro03959 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 6.7e-51 205.3 309 45.3
CDE06G1256 Ceratophyllum demersum HOM05D002737 ORTHO05D005828 8.8e-51 204.9 306 44.1
Gorai.001G124100 Gossypium raimondii HOM05D002737 ORTHO05D005828 2.0e-50 203.8 313 46.0
PSO063G0569 Papaver somniferum HOM05D002737 ORTHO05D005828 7.5e-50 201.8 306 43.1
CiPaw.14G096400 Carya illinoinensis HOM05D002737 ORTHO05D005828 9.7e-50 201.4 317 42.0
CDE08G0429 Ceratophyllum demersum HOM05D002737 ORTHO05D003752 1.7e-49 200.7 203 60.1
MD15G1329700 Malus domestica HOM05D002737 ORTHO05D005828 3.7e-49 199.5 204 57.8
Potri.009G162500 Populus trichocarpa HOM05D002737 ORTHO05D005828 3.7e-49 199.5 315 41.9
QL07p000712 Quercus lobata HOM05D002737 ORTHO05D005828 6.3e-49 198.7 165 64.8
Cc01_g08470 Coffea canephora HOM05D002737 ORTHO05D005828 8.3e-49 198.4 310 46.8
Glyma.10G288000 Glycine max HOM05D002737 ORTHO05D005828 1.4e-48 197.6 320 43.1
AL1G53070 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 1.8e-48 197.2 202 58.9
Eucgr.J00541 Eucalyptus grandis HOM05D002737 ORTHO05D005828 2.4e-48 196.8 206 56.3
MBI01_g04520_MAGBIO Magnolia biondii HOM05D002737 ORTHO05D005828 1.2e-47 194.5 310 52.6
Nn6g34744 Nelumbo nucifera HOM05D002737 ORTHO05D005828 1.6e-47 194.1 307 47.6
TAR268G0004 Trochodendron aralioides HOM05D002737 ORTHO05D005828 2.7e-47 193.4 308 43.8
Peaxi162Scf00010g03312 Petunia axillaris HOM05D002737 ORTHO05D005828 3.5e-47 193.0 254 47.6
Haze_00729 Corylus avellana HOM05D002737 ORTHO05D005828 4.5e-47 192.6 203 53.2
Peaxi162Scf01010g00216 Petunia axillaris HOM05D002737 ORTHO05D005828 4.5e-47 192.6 254 47.2
ATR0807G231 Amborella trichopoda HOM05D002737 ORTHO05D005828 7.7e-47 191.8 315 42.5
Haze_00725 Corylus avellana HOM05D002737 ORTHO05D005828 1.0e-46 191.4 203 53.2
Psat2g008640 Pisum sativum HOM05D002737 ORTHO05D005828 1.3e-46 191.0 314 41.4
Ca_06383_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 1.7e-46 190.7 320 41.6
Ca_29964_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 1.7e-46 190.7 320 41.6
Glyma.20G101200 Glycine max HOM05D002737 ORTHO05D005828 3.8e-46 189.5 316 42.4
Medtr5g095010 Medicago truncatula HOM05D002737 ORTHO05D005828 3.8e-46 189.5 317 42.0
Lalb_Chr02g0143691 Lupinus albus HOM05D002737 ORTHO05D005828 5.0e-46 189.1 316 43.0
Ciclev10028821m.g Citrus clementina HOM05D002737 ORTHO05D005828 3.2e-45 186.4 330 50.6
Lj5g0022679 Lotus japonicus HOM05D002737 ORTHO05D005828 3.2e-45 186.4 204 52.9
Aqoxy4G02622 Aquilegia oxysepala HOM05D002737 ORTHO05D005828 1.2e-44 184.5 314 39.5
COL.COLO4_22657 Corchorus olitorius HOM05D002737 ORTHO05D005828 1.2e-44 184.5 314 43.9
Haze_23327 Corylus avellana HOM05D002737 ORTHO05D005828 1.2e-44 184.5 203 52.2
arahy.Tifrunner.gnm1.ann1.4SNC56 Arachis hypogaea HOM05D002737 ORTHO05D005828 4.7e-44 182.6 311 43.1
arahy.Tifrunner.gnm1.ann1.AGV1MP Arachis hypogaea HOM05D002737 ORTHO05D005828 4.7e-44 182.6 311 42.8
CARHR119800 Cardamine hirsuta HOM05D002737 ORTHO05D005828 1.8e-43 180.6 168 66.7
Peaxi162Scf01324g00241 Petunia axillaris HOM05D002737 ORTHO05D005828 6.8e-43 178.7 318 43.7
TPR.G14160 Trifolium pratense HOM05D002737 ORTHO05D005828 3.4e-42 176.4 208 53.4
HPP92_021234 Vanilla planifolia HOM05D002737 ORTHO05D005828 3.4e-42 176.4 203 50.7
VMungo0720G0453 Vigna mungo HOM05D002737 ORTHO05D005828 4.4e-42 176.0 302 42.1
Sabra09G0126900 Salix brachista HOM05D002737 ORTHO05D005828 4.8e-41 172.6 256 57.4
Lj5g0011855 Lotus japonicus HOM05D002737 ORTHO05D005828 6.3e-41 172.2 318 39.0
Phvul.007G013400 Phaseolus vulgaris HOM05D002737 ORTHO05D005828 1.1e-40 171.4 204 52.0
Peaxi162Scf00010g03410 Petunia axillaris HOM05D002737 ORTHO05D005828 3.1e-40 169.9 254 41.7
Atru.chr3.3139 Acer truncatum HOM05D002737 ORTHO05D005828 2.0e-39 167.2 210 51.0
AagrBONN_evm.TU.Sc2ySwM_368.3225 Anthoceros agrestis HOM05D002737 ORTHO05D005828 2.0e-39 167.2 192 51.6
Pp3c10_11700 Physcomitrium patens HOM05D002737 ORTHO05D005828 5.5e-37 159.1 205 48.8
SEGI_17121 Sequoiadendron giganteum HOM05D002737 ORTHO05D005828 5.5e-37 159.1 165 57.0
Sabra15G0053400 Salix brachista HOM05D002737 ORTHO05D005828 1.6e-36 157.5 308 49.7
Sabra15G0053700 Salix brachista HOM05D002737 ORTHO05D005828 1.8e-35 154.1 200 49.0
Zm00001eb422940 Zea mays HOM05D002737 ORTHO05D005828 3.0e-35 153.3 132 59.8
HanXRQChr03g0065531 Helianthus annuus HOM05D002737 ORTHO05D005828 1.2e-34 151.4 231 58.4
QL07p000775 Quercus lobata HOM05D002737 ORTHO05D005828 1.1e-32 144.8 159 50.3
Os04g0440000 Oryza sativa ssp. japonica HOM05D002737 ORTHO05D005828 9.2e-32 141.7 145 54.5
CBR_g45752 Chara braunii HOM05D002737 ORTHO05D005828 1.0e-30 138.3 200 45.5
Mapoly0024s0122 Marchantia polymorpha HOM05D002737 ORTHO05D005828 1.0e-30 138.3 199 45.2
CiPaw.13G131400 Carya illinoinensis HOM05D002737 ORTHO05D005828 5.0e-30 136.0 133 55.6
CBR_g6328 Chara braunii HOM05D002737 ORTHO05D005828 1.6e-28 131.0 198 44.4
AUR62037790 Chenopodium quinoa HOM05D002737 ORTHO05D005828 8.0e-28 128.6 99 69.7
AUR62018224 Chenopodium quinoa HOM05D002737 ORTHO05D005828 1.8e-27 127.5 99 68.7
Cre17.g734000 Chlamydomonas reinhardtii HOM05D002737 ORTHO05D005828 6.8e-27 125.6 201 41.8
QL07p000693 Quercus lobata HOM05D002737 ORTHO05D009499 1.5e-26 124.4 126 54.0
MCO06G117 Micromonas commoda HOM05D002737 ORTHO05D005828 7.5e-26 122.1 203 42.4
Potri.004G201300 Populus trichocarpa HOM05D002737 ORTHO05D005828 1.6e-23 114.4 165 45.5
FAN28G1974 Fragaria x ananassa HOM05D002737 ORTHO05D005828 1.3e-22 111.3 105 61.0
Migut.D02413 Erythranthe guttata HOM05D002737 ORTHO05D005828 8.6e-22 108.6 215 37.7
Gohir.D05G081600 Gossypium hirsutum HOM05D002737 ORTHO05D005828 1.6e-20 104.4 273 34.1
Actinidia24241 Actinidia chinensis HOM05D002737 ORTHO05D005828 8.9e-19 98.6 191 36.6
Lalb_Chr06g0164021 Lupinus albus HOM05D002737 ORTHO05D005828 9.8e-18 95.1 106 50.9
Actinidia24240 Actinidia chinensis HOM05D002737 ORTHO05D005828 2.2e-17 94.0 98 56.1
Migut.D02400 Erythranthe guttata HOM05D002737 ORTHO05D005828 2.9e-17 93.6 314 29.9
MD01G1023000 Malus domestica HOM05D002737 ORTHO05D005828 2.7e-15 87.0 98 56.1
SHI06201 Sapria himalayana HOM05D002737 ORTHO05D005828 5.1e-14 82.8 74 58.1
Oeu025863.1 Olea europaea HOM05D002737 ORTHO05D005828 1.2e-12 78.2 148 40.5
AagrBONN_evm.TU.Sc2ySwM_368.3239 Anthoceros agrestis HOM05D002737 ORTHO05D005828 1.8e-11 74.3 73 58.9
CSS0037550 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 1.5e-10 71.2 95 51.6
QL07p000753 Quercus lobata HOM05D002737 ORTHO05D005828 3.4e-10 70.1 54 70.4
CARHR119790 Cardamine hirsuta HOM05D002737 ORTHO05D005828 3.7e-09 66.6 213 31.5
arahy.Tifrunner.gnm1.ann1.G9FM3T Arachis hypogaea HOM05D002737 ORTHO05D005828 3.2e-08 63.5 93 43.0
BcaC01g00491 Brassica carinata HOM05D013831 ORTHO05D019913 5.1e-06 56.2 36 77.8
BcaC09g48639 Brassica carinata HOM05D013831 ORTHO05D019913 5.1e-06 56.2 36 77.8
C01p47400 Brassica napus HOM05D013831 ORTHO05D019913 5.1e-06 56.2 36 77.8
C03p80610 Brassica napus HOM05D013831 ORTHO05D019913 5.1e-06 56.2 36 77.8
C07p10180 Brassica napus HOM05D013831 ORTHO05D019913 5.1e-06 56.2 36 77.8
BolC3t20304H Brassica oleracea HOM05D013831 ORTHO05D019913 5.1e-06 56.2 36 77.8
BolC1t04709H Brassica oleracea HOM05D013831 ORTHO05D019913 8.6e-06 55.5 36 75.0
Cpa.g.sc23.121 Carica papaya HOM05D002737 ORTHO05D005828 8.6e-06 55.5 140 55.0


User provided reference genes

Program Settings