Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC4t26989H Brassica oleracea HOM05D003869 ORTHO05D004718 2.2e-38 161.8 78 100.0
BraA04t17507Z Brassica rapa HOM05D003869 ORTHO05D004718 4.1e-29 131.0 69 94.2
A04p19090 Brassica napus HOM05D003869 ORTHO05D004718 1.7e-27 125.6 71 88.7
BcaB06g27998 Brassica carinata HOM05D003869 ORTHO05D004718 1.4e-21 105.9 80 67.5
BcaB06g28007 Brassica carinata HOM05D003869 ORTHO05D004718 1.4e-21 105.9 69 72.5
BcaB06g28001 Brassica carinata HOM05D003869 ORTHO05D004718 1.6e-20 102.4 70 74.3
Thhalv10000613m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 2.5e-18 95.1 52 78.8
AL4G14520 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 9.5e-18 93.2 54 72.2
AL4G14510 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 2.8e-17 91.7 69 62.3
AL4G18480 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 2.8e-17 91.7 65 63.1
Sp4g03710 Schrenkiella parvula HOM05D003869 ORTHO05D004718 1.2e-15 86.3 69 59.4
BraA04t17514Z Brassica rapa HOM05D003869 ORTHO05D004718 1.5e-15 85.9 69 59.4
AL4G18510 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 2.0e-15 85.5 64 59.4
Thhalv10000198m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 2.0e-15 85.5 52 71.2
AT2G24250 Arabidopsis thaliana HOM05D003869 ORTHO05D004718 2.6e-15 85.1 57 70.2
BcaC02g08487 Brassica carinata HOM05D003869 ORTHO05D004718 2.6e-15 85.1 65 56.9
CARHR117220 Cardamine hirsuta HOM05D003869 ORTHO05D004718 5.7e-15 84.0 65 67.7
AL4G14530 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 7.5e-15 83.6 69 58.0
A04p19140 Brassica napus HOM05D003869 ORTHO05D004718 9.8e-15 83.2 69 58.0
C04p54520 Brassica napus HOM05D003869 ORTHO05D004718 1.3e-14 82.8 69 58.0
Carub.0004s0426 Capsella rubella HOM05D003869 ORTHO05D004718 1.3e-14 82.8 52 65.4
Carub.0004s0427 Capsella rubella HOM05D003869 ORTHO05D004718 1.3e-14 82.8 57 64.9
AL4G15555 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 1.7e-14 82.4 52 67.3
AL4G15660 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 1.7e-14 82.4 52 67.3
BcaB01g02713 Brassica carinata HOM05D003869 ORTHO05D004718 1.7e-14 82.4 57 64.9
BcaC02g08414 Brassica carinata HOM05D003869 ORTHO05D004718 1.7e-14 82.4 63 60.3
BolC4t26995H Brassica oleracea HOM05D003869 ORTHO05D004718 1.7e-14 82.4 63 60.3
BcaC02g08489 Brassica carinata HOM05D003869 ORTHO05D004718 2.9e-14 81.6 54 64.8
A04p19130 Brassica napus HOM05D003869 ORTHO05D004718 2.9e-14 81.6 69 56.5
C04p53760 Brassica napus HOM05D003869 ORTHO05D004718 2.9e-14 81.6 54 64.8
BraA04t17512Z Brassica rapa HOM05D003869 ORTHO05D004718 2.9e-14 81.6 69 56.5
Carub.0004s0422 Capsella rubella HOM05D003869 ORTHO05D004718 2.9e-14 81.6 69 56.5
Carub.0004s0423 Capsella rubella HOM05D003869 ORTHO05D004718 2.9e-14 81.6 54 68.5
Thhalv10000460m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 2.9e-14 81.6 59 64.4
A04p19120 Brassica napus HOM05D003869 ORTHO05D004718 4.9e-14 80.9 89 51.7
BolC4t26993H Brassica oleracea HOM05D003869 ORTHO05D004718 4.9e-14 80.9 89 48.3
BcaB01g02998 Brassica carinata HOM05D003869 ORTHO05D004718 6.3e-14 80.5 69 56.5
BraA04t17461Z Brassica rapa HOM05D003869 ORTHO05D004718 8.3e-14 80.1 54 63.0
Carub.0004s0432 Capsella rubella HOM05D003869 ORTHO05D004718 8.3e-14 80.1 68 58.8
Carub.0004s0353 Capsella rubella HOM05D003869 ORTHO05D004718 1.1e-13 79.7 56 64.3
Carub.0004s0357 Capsella rubella HOM05D003869 ORTHO05D004718 1.1e-13 79.7 60 60.0
Thhalv10000166m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 1.1e-13 79.7 73 57.5
BcaC02g08486 Brassica carinata HOM05D003869 ORTHO05D004718 1.4e-13 79.3 52 63.5
BolC4t26931H Brassica oleracea HOM05D003869 ORTHO05D004718 1.4e-13 79.3 54 63.0
CARHR117020 Cardamine hirsuta HOM05D003869 ORTHO05D004718 1.4e-13 79.3 54 63.0
CARHR117030 Cardamine hirsuta HOM05D003869 ORTHO05D004718 1.8e-13 79.0 49 71.4
AL4G18540 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 2.4e-13 78.6 88 50.0
BcaC02g08416 Brassica carinata HOM05D003869 ORTHO05D004718 2.4e-13 78.6 58 58.6
Thhalv10019678m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 2.4e-13 78.6 52 67.3
AL4G18550 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 3.2e-13 78.2 83 51.8
BcaB06g28002 Brassica carinata HOM05D003869 ORTHO05D004718 3.2e-13 78.2 50 64.0
BcaB06g28006 Brassica carinata HOM05D003869 ORTHO05D004718 3.2e-13 78.2 51 68.6
A06p40890 Brassica napus HOM05D003869 ORTHO05D004718 3.2e-13 78.2 69 56.5
BraA06t27011Z Brassica rapa HOM05D003869 ORTHO05D004718 3.2e-13 78.2 69 56.5
C04p53780 Brassica napus HOM05D003869 ORTHO05D004718 4.1e-13 77.8 55 61.8
BolC4t26933H Brassica oleracea HOM05D003869 ORTHO05D004718 4.1e-13 77.8 55 61.8
Thhalv10000175m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 4.1e-13 77.8 61 54.1
Thhalv10000199m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 4.1e-13 77.8 50 70.0
CARHR118620 Cardamine hirsuta HOM05D003869 ORTHO05D004718 5.4e-13 77.4 80 50.0
AL4G18560 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 7.0e-13 77.0 64 56.2
BcaC06g33784 Brassica carinata HOM05D003869 ORTHO05D004718 7.0e-13 77.0 69 55.1
C03p32370 Brassica napus HOM05D003869 ORTHO05D004718 7.0e-13 77.0 61 59.0
C07p36960 Brassica napus HOM05D003869 ORTHO05D004718 7.0e-13 77.0 69 55.1
BolC7t44209H Brassica oleracea HOM05D003869 ORTHO05D004718 7.0e-13 77.0 69 55.1
Sp4g03230 Schrenkiella parvula HOM05D003869 ORTHO05D004718 7.0e-13 77.0 69 55.1
AT1G64840 Arabidopsis thaliana HOM05D003869 ORTHO05D004718 9.2e-13 76.6 46 65.2
A03p26980 Brassica napus HOM05D003869 ORTHO05D004718 1.2e-12 76.3 61 57.4
BcaB06g28005 Brassica carinata HOM05D003869 ORTHO05D004718 1.6e-12 75.9 51 62.7
BraA03t11909Z Brassica rapa HOM05D003869 ORTHO05D004718 1.6e-12 75.9 61 57.4
Thhalv10000675m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 1.6e-12 75.9 69 53.6
C04p54430 Brassica napus HOM05D003869 ORTHO05D004718 2.7e-12 75.1 66 51.5
Carub.0004s0420 Capsella rubella HOM05D003869 ORTHO05D004718 2.7e-12 75.1 49 69.4
Carub.0004s0433 Capsella rubella HOM05D003869 ORTHO05D004718 2.7e-12 75.1 67 53.7
Carub.0004s0430 Capsella rubella HOM05D003869 ORTHO05D004718 3.5e-12 74.7 54 61.1
BolC4t26987H Brassica oleracea HOM05D003869 ORTHO05D004718 4.6e-12 74.3 62 56.5
Carub.0004s0429 Capsella rubella HOM05D003869 ORTHO05D004718 4.6e-12 74.3 49 65.3
CARHR117230 Cardamine hirsuta HOM05D003869 ORTHO05D004718 5.9e-12 73.9 54 63.0
A04p18500 Brassica napus HOM05D003869 ORTHO05D004718 7.8e-12 73.6 53 60.4
A04p18540 Brassica napus HOM05D003869 ORTHO05D004718 7.8e-12 73.6 53 60.4
BraA04t17462Z Brassica rapa HOM05D003869 ORTHO05D004718 7.8e-12 73.6 53 60.4
Thhalv10000192m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 7.8e-12 73.6 69 52.2
BcaC02g08422 Brassica carinata HOM05D003869 ORTHO05D004718 1.0e-11 73.2 62 56.5
C04p54410 Brassica napus HOM05D003869 ORTHO05D004718 1.0e-11 73.2 62 56.5
C04p54480 Brassica napus HOM05D003869 ORTHO05D004718 1.0e-11 73.2 51 58.8
Carub.0004s0354 Capsella rubella HOM05D003869 ORTHO05D004718 1.0e-11 73.2 70 51.4
AL4G15620 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 1.7e-11 72.4 55 63.6
A04p19070 Brassica napus HOM05D003869 ORTHO05D004718 2.3e-11 72.0 79 49.4
CARHR116990 Cardamine hirsuta HOM05D003869 ORTHO05D004718 2.9e-11 71.6 70 51.4
BraA04t17506Z Brassica rapa HOM05D003869 ORTHO05D004718 3.9e-11 71.2 79 49.4
CARHR116880 Cardamine hirsuta HOM05D003869 ORTHO05D004718 5.0e-11 70.9 54 57.4
C04p53770 Brassica napus HOM05D003869 ORTHO05D004718 6.6e-11 70.5 51 58.8
BolC4t26932H Brassica oleracea HOM05D003869 ORTHO05D004718 6.6e-11 70.5 51 58.8
BcaC02g08488 Brassica carinata HOM05D003869 ORTHO05D004718 8.6e-11 70.1 51 56.9
AL4G18570 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 1.1e-10 69.7 64 53.1
Carub.0004s0424 Capsella rubella HOM05D003869 ORTHO05D004718 1.1e-10 69.7 50 64.0
AL4G15500 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 1.9e-10 68.9 67 50.7
A04p19110 Brassica napus HOM05D003869 ORTHO05D004718 3.3e-10 68.2 89 44.9
BraA04t17509Z Brassica rapa HOM05D003869 ORTHO05D004718 3.3e-10 68.2 89 44.9
A04p18510 Brassica napus HOM05D003869 ORTHO05D004718 9.5e-10 66.6 49 59.2
C04p54490 Brassica napus HOM05D003869 ORTHO05D004718 9.5e-10 66.6 89 44.9
BraA04t17463Z Brassica rapa HOM05D003869 ORTHO05D004718 9.5e-10 66.6 49 59.2
BcaC02g08418 Brassica carinata HOM05D003869 ORTHO05D004718 1.2e-09 66.2 89 43.8
CARHR116870 Cardamine hirsuta HOM05D003869 ORTHO05D004718 1.0e-08 63.2 48 54.2
A04p18490 Brassica napus HOM05D003869 ORTHO05D004718 6.8e-08 60.5 40 60.0
Sp3g29510 Schrenkiella parvula HOM05D003869 ORTHO05D004718 1.2e-07 59.7 40 55.0
THA.LOC104821381 Tarenaya hassleriana HOM05D000151 ORTHO05D011749 2.0e-07 58.9 38 55.3
BcaC04g23026 Brassica carinata HOM05D003869 ORTHO05D004718 3.4e-07 58.2 40 52.5
C09p12930 Brassica napus HOM05D003869 ORTHO05D004718 3.4e-07 58.2 40 52.5
BolC9t54184H Brassica oleracea HOM05D003869 ORTHO05D004718 3.4e-07 58.2 40 52.5
BcaC04g23024 Brassica carinata HOM05D003869 ORTHO05D004718 4.4e-07 57.8 40 52.5
A09p10950 Brassica napus HOM05D003869 ORTHO05D004718 4.4e-07 57.8 40 52.5
A09p10960 Brassica napus HOM05D003869 ORTHO05D004718 4.4e-07 57.8 40 52.5
C09p12940 Brassica napus HOM05D003869 ORTHO05D004718 4.4e-07 57.8 40 52.5
BolC9t54185H Brassica oleracea HOM05D003869 ORTHO05D004718 4.4e-07 57.8 40 52.5
BraA09t36735Z Brassica rapa HOM05D003869 ORTHO05D004718 4.4e-07 57.8 40 52.5
Sp3g29520 Schrenkiella parvula HOM05D003869 ORTHO05D004718 1.7e-06 55.8 52 44.2
Medtr3g030050 Medicago truncatula HOM05D000151 ORTHO05D000074 2.2e-06 55.5 57 47.4
BcaB07g31773 Brassica carinata HOM05D003869 ORTHO05D004718 6.4e-06 53.9 40 50.0
Gohir.A01G171700 Gossypium hirsutum HOM05D000151 ORTHO05D000074 6.4e-06 53.9 50 50.0
Phvul.005G022400 Phaseolus vulgaris HOM05D000151 ORTHO05D000074 6.4e-06 53.9 62 41.9
Thecc.02G052600 Theobroma cacao HOM05D000151 ORTHO05D000074 6.4e-06 53.9 38 60.5


User provided reference genes

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