Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC4t26952H Brassica oleracea HOM05D007770 ORTHO05D009827 2.9e-59 231.9 134 100.0
C04p54000 Brassica napus HOM05D007770 ORTHO05D009827 4.8e-54 214.5 134 94.8
A04p18710 Brassica napus HOM05D007770 ORTHO05D009827 9.1e-53 210.3 135 85.2
BraA04t17481Z Brassica rapa HOM05D007770 ORTHO05D009827 4.5e-52 208.0 135 84.4
BcaC02g08464 Brassica carinata HOM05D007770 ORTHO05D009827 4.7e-49 198.0 136 83.1
Thhalv10000372m.g Eutrema salsugineum HOM05D007770 ORTHO05D009827 2.7e-44 182.2 137 69.3
AT2G24395 Arabidopsis thaliana HOM05D007770 ORTHO05D009827 5.9e-44 181.0 137 67.2
Sp4g03420 Schrenkiella parvula HOM05D007770 ORTHO05D009827 1.1e-42 176.8 139 64.7
Aa31sc132G30 Aethionema arabicum HOM05D007770 ORTHO05D009827 6.1e-41 171.0 139 63.3
AL4G14830 Arabidopsis lyrata HOM05D007770 ORTHO05D009827 1.4e-40 169.9 137 64.2
Carub.0004s0375 Capsella rubella HOM05D007770 ORTHO05D009827 1.8e-40 169.5 137 64.2
CARHR117660 Cardamine hirsuta HOM05D007770 ORTHO05D009827 8.3e-38 160.6 139 62.6
Gorai.010G124500 Gossypium raimondii HOM05D007770 ORTHO05D009827 3.3e-26 122.1 137 56.2
Gohir.D06G109700 Gossypium hirsutum HOM05D007770 ORTHO05D009827 5.6e-26 121.3 137 56.2
MD08G1124100 Malus domestica HOM05D007770 ORTHO05D009827 1.2e-25 120.2 133 47.4
Manes.16G137500 Manihot esculenta HOM05D007770 ORTHO05D009827 1.2e-25 120.2 134 52.2
Thecc.09G003100 Theobroma cacao HOM05D007770 ORTHO05D009827 1.6e-25 119.8 136 55.1
Duzib150G1352 Durio zibethinus HOM05D007770 ORTHO05D009827 2.8e-25 119.0 131 45.8
QL12p025908 Quercus lobata HOM05D007770 ORTHO05D009827 2.8e-25 119.0 128 49.2
GSVIVG01035563001 Vitis vinifera HOM05D007770 ORTHO05D009827 4.7e-25 118.2 120 62.5
Dinv13246 Davidia involucrata HOM05D007770 ORTHO05D009827 1.1e-24 117.1 123 51.2
FvH4_2g36440 Fragaria vesca HOM05D007770 ORTHO05D009827 2.3e-24 115.9 134 46.3
FAN20G1378 Fragaria x ananassa HOM05D007770 ORTHO05D009827 2.3e-24 115.9 134 55.2
FAN27G1234 Fragaria x ananassa HOM05D007770 ORTHO05D009827 5.2e-24 114.8 134 46.3
Prupe.1G455800 Prunus persica HOM05D007770 ORTHO05D009827 5.2e-24 114.8 137 54.7
arahy.Tifrunner.gnm1.ann1.SE3NL1 Arachis hypogaea HOM05D007770 ORTHO05D009827 1.5e-23 113.2 127 58.3
Potri.006G278250 Populus trichocarpa HOM05D007770 ORTHO05D009827 2.0e-23 112.8 126 54.8
Lj1g0002810 Lotus japonicus HOM05D007770 ORTHO05D009827 5.8e-23 111.3 131 48.1
CAN.G480.16 Capsicum annuum HOM05D007770 ORTHO05D009827 9.8e-23 110.5 123 60.2
arahy.Tifrunner.gnm1.ann1.DWH8JW Arachis hypogaea HOM05D007770 ORTHO05D009827 1.3e-22 110.2 117 58.1
Nitab4.5_0001942g0170 Nicotiana tabacum HOM05D007770 ORTHO05D009827 1.7e-22 109.8 103 65.0
Sabra06G0215900 Salix brachista HOM05D007770 ORTHO05D009827 1.7e-22 109.8 130 54.6
PGSC0003DMG400029583 Solanum tuberosum HOM05D007770 ORTHO05D009827 1.7e-22 109.8 103 65.0
TAR625G0611 Trochodendron aralioides HOM05D007770 ORTHO05D009827 2.9e-22 109.0 119 47.1
VMungo1309G0540 Vigna mungo HOM05D007770 ORTHO05D009827 2.9e-22 109.0 143 45.5
Atru.chr7.2683 Acer truncatum HOM05D007770 ORTHO05D009827 3.7e-22 108.6 129 44.2
Ciclev10010266m.g Citrus clementina HOM05D007770 ORTHO05D009827 6.4e-22 107.8 115 48.7
Sopen08g022850 Solanum pennellii HOM05D007770 ORTHO05D009827 1.1e-21 107.1 103 63.1
CiPaw.08G021600 Carya illinoinensis HOM05D007770 ORTHO05D009827 1.4e-21 106.7 125 46.4
Solyc08g069230.3 Solanum lycopersicum HOM05D007770 ORTHO05D009827 1.4e-21 106.7 103 62.1
Nn8g41062 Nelumbo nucifera HOM05D007770 ORTHO05D009827 1.9e-21 106.3 115 51.3
Phvul.009G103700 Phaseolus vulgaris HOM05D007770 ORTHO05D009827 1.9e-21 106.3 111 48.6
MSTRG.13938 Avicennia marina HOM05D007770 ORTHO05D009827 3.2e-21 105.5 99 50.5
Eucgr.C04242 Eucalyptus grandis HOM05D007770 ORTHO05D009827 1.2e-20 103.6 111 48.6
CANSAT56G0680 Cannabis sativa HOM05D007770 ORTHO05D009827 2.1e-20 102.8 69 63.8
PSO063G4434 Papaver somniferum HOM05D007770 ORTHO05D009827 2.1e-20 102.8 112 45.5
TWI34G0832 Tripterygium wilfordii HOM05D007770 ORTHO05D009827 2.7e-20 102.4 99 54.5
EL10Ac2g03698 Beta vulgaris HOM05D007770 ORTHO05D009827 7.8e-20 100.9 69 76.8
CSS0027547 Camellia sinensis var. sinensis HOM05D007770 ORTHO05D009827 1.0e-19 100.5 71 67.6
Lsat_1_v5_gn_3_26540 Lactuca sativa HOM05D007770 ORTHO05D009827 1.0e-19 100.5 94 50.0
CDE02G4318 Ceratophyllum demersum HOM05D007770 ORTHO05D009827 1.7e-19 99.8 90 66.7
CSS0009557 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D009827 3.9e-19 98.6 71 59.2
Cc08_g05750 Coffea canephora HOM05D007770 ORTHO05D009827 3.9e-19 98.6 69 60.9
RcHm_v2.0_Chr6g0305461 Rosa chinensis HOM05D007770 ORTHO05D009827 5.1e-19 98.2 123 55.3
CDE06G0935 Ceratophyllum demersum HOM05D007770 ORTHO05D009827 8.6e-19 97.4 90 66.7
DCAR_000666 Daucus carota HOM05D007770 ORTHO05D009827 8.6e-19 97.4 102 58.8
Migut.E01418 Erythranthe guttata HOM05D007770 ORTHO05D009827 1.1e-18 97.1 97 45.4
Aqoxy7G02675 Aquilegia oxysepala HOM05D007770 ORTHO05D009827 1.5e-18 96.7 125 43.2
ECA246G2424 Erigeron canadensis HOM05D007770 ORTHO05D009827 5.6e-18 94.7 118 43.2
Medtr3g109170 Medicago truncatula HOM05D007770 ORTHO05D009827 9.5e-18 94.0 125 41.6
Gohir.A06G107400 Gossypium hirsutum HOM05D007770 ORTHO05D009827 1.6e-17 93.2 104 48.1
HanXRQChr17g0539271 Helianthus annuus HOM05D007770 ORTHO05D009827 3.6e-17 92.0 92 55.4
Glyma.04G077900 Glycine max HOM05D007770 ORTHO05D009827 4.7e-17 91.7 67 61.2
Psat5g024680 Pisum sativum HOM05D007770 ORTHO05D009827 8.1e-17 90.9 121 41.3
SalBow8G5425 Salvia bowleyana HOM05D007770 ORTHO05D009827 8.1e-17 90.9 124 50.8
TPR.G12312 Trifolium pratense HOM05D007770 ORTHO05D009827 2.3e-16 89.4 61 60.7
arahy.Tifrunner.gnm1.ann1.T2QDAL Arachis hypogaea HOM05D007770 ORTHO05D009827 5.2e-16 88.2 66 59.1
FAN15G1940 Fragaria x ananassa HOM05D007770 ORTHO05D009827 1.2e-15 87.0 101 47.5
HPP92_017098 Vanilla planifolia HOM05D007770 ORTHO05D009827 3.4e-15 85.5 63 57.1
Lalb_Chr23g0269281 Lupinus albus HOM05D007770 ORTHO05D009827 5.8e-15 84.7 128 51.6
Nitab4.5_0000970g0130 Nicotiana tabacum HOM05D007770 ORTHO05D009827 1.7e-14 83.2 70 55.7
CANSAT56G1809 Cannabis sativa HOM05D007770 ORTHO05D009827 2.9e-14 82.4 66 54.5
Sed0000657 Sechium edule HOM05D007770 ORTHO05D009827 6.4e-14 81.3 70 54.3
MELO3C011169.2 Cucumis melo HOM05D007770 ORTHO05D009827 1.1e-13 80.5 70 51.4
CsaV3_2G031200 Cucumis sativus L. HOM05D007770 ORTHO05D009827 1.1e-13 80.5 90 46.7
Pp3c27_7640 Physcomitrium patens HOM05D007770 ORTHO05D009827 1.4e-13 80.1 61 57.4
ClCG08G012500 Citrullus lanatus HOM05D007770 ORTHO05D009827 7.1e-13 77.8 70 50.0
MD15G1102800 Malus domestica HOM05D007770 ORTHO05D009827 6.0e-12 74.7 115 37.4
CBR_g3948 Chara braunii HOM05D007770 ORTHO05D009827 6.6e-11 71.2 63 49.2
Os08g0520850 Oryza sativa ssp. japonica HOM05D007770 ORTHO05D009827 1.5e-10 70.1 36 75.0
Mapoly0035s0047 Marchantia polymorpha HOM05D007770 ORTHO05D009827 9.6e-10 67.4 65 43.1
HPP92_017108 Vanilla planifolia HOM05D007770 ORTHO05D009827 9.6e-10 67.4 36 72.2
unitig_747.g21378 Utricularia gibba HOM05D007770 ORTHO05D009827 1.2e-09 67.0 57 43.9
AagrBONN_evm.TU.Sc2ySwM_228.4990 Anthoceros agrestis HOM05D007770 ORTHO05D009827 8.1e-09 64.3 64 43.8
Actinidia25745 Actinidia chinensis HOM05D007770 ORTHO05D009827 6.8e-08 61.2 52 51.9
Glyma.06G079000 Glycine max HOM05D007770 ORTHO05D009827 1.5e-07 60.1 30 76.7
MD08G1226400 Malus domestica HOM05D007770 ORTHO05D009827 4.9e-06 55.1 27 81.5
Zm00001eb035580 Zea mays HOM05D007770 ORTHO05D009827 4.9e-06 55.1 87 35.6


User provided reference genes

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