Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC4t26921H Brassica oleracea HOM05D004690 ORTHO05D005527 3.0e-141 505.4 296 100.0
C04p53650 Brassica napus HOM05D004690 ORTHO05D005527 4.4e-140 501.5 296 99.3
BcaC02g08501 Brassica carinata HOM05D004690 ORTHO05D005527 2.2e-139 499.2 296 99.7
A04p18380 Brassica napus HOM05D004690 ORTHO05D005527 5.4e-138 494.6 274 99.3
BraA04t17449Z Brassica rapa HOM05D004690 ORTHO05D005527 8.5e-136 487.3 274 97.8
BcaB06g27964 Brassica carinata HOM05D004690 ORTHO05D005527 2.0e-132 476.1 296 94.9
Sp4g02970 Schrenkiella parvula HOM05D004690 ORTHO05D005527 2.4e-122 442.6 279 90.3
Thhalv10000269m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 5.2e-117 424.9 278 88.5
Carub.0004s0323 Capsella rubella HOM05D004690 ORTHO05D005527 7.5e-116 421.0 270 88.9
AL4G14110 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 1.1e-114 417.2 278 83.5
AT2G24060 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 1.0e-112 410.6 272 82.4
CARHR118290 Cardamine hirsuta HOM05D004690 ORTHO05D005527 2.8e-110 402.5 281 79.7
A03p60250 Brassica napus HOM05D004690 ORTHO05D005527 8.6e-104 380.9 275 77.5
BraA03t15065Z Brassica rapa HOM05D004690 ORTHO05D005527 2.8e-102 375.9 276 77.2
Aa31LG7G12770 Aethionema arabicum HOM05D004690 ORTHO05D005527 6.8e-101 371.3 283 78.4
CARHR238570 Cardamine hirsuta HOM05D004690 ORTHO05D005527 1.3e-99 367.1 277 77.6
Sp7g28600 Schrenkiella parvula HOM05D004690 ORTHO05D005527 9.2e-98 360.9 262 79.0
AT4G30690 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 4.6e-97 358.6 262 79.8
BcaNung02747 Brassica carinata HOM05D004690 ORTHO05D005527 8.6e-96 354.4 277 75.8
C07p58160 Brassica napus HOM05D004690 ORTHO05D005527 8.6e-96 354.4 277 75.8
BolC7t46275H Brassica oleracea HOM05D004690 ORTHO05D005527 8.6e-96 354.4 277 75.8
AL7G21430 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 3.1e-93 345.9 265 77.0
Thhalv10025935m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 1.4e-90 337.0 273 74.0
THA.LOC104803547 Tarenaya hassleriana HOM05D004690 ORTHO05D005527 6.0e-89 331.6 270 68.9
COL.COLO4_23958 Corchorus olitorius HOM05D004690 ORTHO05D005527 5.1e-80 302.0 272 61.0
Aa31LG2G19730 Aethionema arabicum HOM05D004690 ORTHO05D005527 6.7e-80 301.6 274 65.7
Cpa.g.sc46.177 Carica papaya HOM05D004690 ORTHO05D005527 1.1e-79 300.8 280 64.3
Thecc.09G151500 Theobroma cacao HOM05D004690 ORTHO05D005527 2.5e-79 299.7 274 61.3
Ciclev10009165m.g Citrus clementina HOM05D004690 ORTHO05D005527 4.0e-77 292.4 279 60.9
CSS0044573 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 9.0e-77 291.2 277 59.6
GSVIVG01023642001 Vitis vinifera HOM05D004690 ORTHO05D005527 2.0e-76 290.0 274 59.5
CiPaw.15G165900 Carya illinoinensis HOM05D004690 ORTHO05D005527 1.3e-75 287.3 250 66.8
Eucgr.C02505 Eucalyptus grandis HOM05D004690 ORTHO05D005527 1.3e-75 287.3 291 60.8
BcaNung04824 Brassica carinata HOM05D004690 ORTHO05D005527 2.2e-75 286.6 185 84.9
CiPaw.16G107700 Carya illinoinensis HOM05D004690 ORTHO05D005527 2.2e-75 286.6 279 63.1
Gohir.A07G037900 Gossypium hirsutum HOM05D004690 ORTHO05D005527 2.2e-75 286.6 272 57.7
Gohir.D07G042000 Gossypium hirsutum HOM05D004690 ORTHO05D005527 2.2e-75 286.6 272 57.7
Gorai.001G044800 Gossypium raimondii HOM05D004690 ORTHO05D005527 2.2e-75 286.6 272 57.7
CSS0047585 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 2.9e-75 286.2 279 59.9
Prupe.7G265300 Prunus persica HOM05D004690 ORTHO05D005527 4.9e-75 285.4 280 58.2
Manes.14G143400 Manihot esculenta HOM05D004690 ORTHO05D005527 1.1e-74 284.3 279 59.5
Hma1.2p1_0028F.1_g017650 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 7.1e-74 281.6 282 57.4
Atru.chr7.16 Acer truncatum HOM05D004690 ORTHO05D005527 9.3e-74 281.2 224 71.0
Dinv42835 Davidia involucrata HOM05D004690 ORTHO05D005527 2.7e-73 279.6 285 61.4
Dinv43264 Davidia involucrata HOM05D004690 ORTHO05D005527 2.7e-73 279.6 285 61.4
TWI63G1092 Tripterygium wilfordii HOM05D004690 ORTHO05D005527 4.6e-73 278.9 279 59.9
Cfa020803 Carpinus fangiana HOM05D004690 ORTHO05D005527 7.9e-73 278.1 277 61.0
Nn2g12436 Nelumbo nucifera HOM05D004690 ORTHO05D005527 1.0e-72 277.7 280 57.5
Lj4g0007308 Lotus japonicus HOM05D004690 ORTHO05D005527 3.0e-72 276.2 282 59.6
Potri.018G104000 Populus trichocarpa HOM05D004690 ORTHO05D005527 3.0e-72 276.2 281 57.7
TAR383G0346 Trochodendron aralioides HOM05D004690 ORTHO05D005527 4.3e-71 272.3 277 59.6
FAN26G1928 Fragaria x ananassa HOM05D004690 ORTHO05D005527 5.6e-71 271.9 282 57.8
arahy.Tifrunner.gnm1.ann1.RJ6BPE Arachis hypogaea HOM05D004690 ORTHO05D005527 1.3e-70 270.8 278 59.0
arahy.Tifrunner.gnm1.ann1.VFXC0H Arachis hypogaea HOM05D004690 ORTHO05D005527 1.6e-70 270.4 278 59.0
FvH4_1g00690 Fragaria vesca HOM05D004690 ORTHO05D005527 1.6e-70 270.4 281 59.1
PGR102G1430 Punica granatum HOM05D004690 ORTHO05D005527 1.6e-70 270.4 259 61.8
CANSAT11G0185 Cannabis sativa HOM05D004690 ORTHO05D005527 3.7e-70 269.2 281 59.1
RcHm_v2.0_Chr2g0085411 Rosa chinensis HOM05D004690 ORTHO05D005527 6.2e-70 268.5 283 58.3
HanXRQChr10g0307591 Helianthus annuus HOM05D004690 ORTHO05D005527 1.5e-68 263.8 231 65.8
Phvul.003G154700 Phaseolus vulgaris HOM05D004690 ORTHO05D005527 2.6e-68 263.1 276 59.4
ATR0019G027 Amborella trichopoda HOM05D004690 ORTHO05D005527 3.4e-68 262.7 249 61.8
HanXRQChr05g0138951 Helianthus annuus HOM05D004690 ORTHO05D005527 3.4e-68 262.7 253 60.5
Lsat_1_v5_gn_5_89380 Lactuca sativa HOM05D004690 ORTHO05D005527 4.5e-68 262.3 266 57.1
MSTRG.10705 Avicennia marina HOM05D004690 ORTHO05D005527 5.8e-68 261.9 262 57.3
Sed0017216 Sechium edule HOM05D004690 ORTHO05D005527 1.7e-67 260.4 208 65.9
PGSC0003DMG400011147 Solanum tuberosum HOM05D004690 ORTHO05D005527 1.7e-67 260.4 275 57.5
Sed0014938 Sechium edule HOM05D004690 ORTHO05D005527 2.2e-67 260.0 251 57.4
Glyma.02G205700 Glycine max HOM05D004690 ORTHO05D005527 3.8e-67 259.2 269 61.3
MD02G1005700 Malus domestica HOM05D004690 ORTHO05D005527 4.9e-67 258.8 286 55.2
Solyc07g005830.3 Solanum lycopersicum HOM05D004690 ORTHO05D005527 4.9e-67 258.8 275 56.7
Sopen07g001930 Solanum pennellii HOM05D004690 ORTHO05D005527 4.9e-67 258.8 275 56.7
Peaxi162Scf00401g00330 Petunia axillaris HOM05D004690 ORTHO05D005527 1.1e-66 257.7 273 57.9
VMungo1215G2193 Vigna mungo HOM05D004690 ORTHO05D005527 1.1e-66 257.7 277 58.1
Hma1.2p1_0222F.1_g093770 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 1.4e-66 257.3 291 53.6
CsaV3_2G007620 Cucumis sativus L. HOM05D004690 ORTHO05D005527 5.5e-66 255.4 252 58.3
Migut.K00308 Erythranthe guttata HOM05D004690 ORTHO05D005527 5.5e-66 255.4 275 58.9
FAN28G2863 Fragaria x ananassa HOM05D004690 ORTHO05D005527 5.5e-66 255.4 279 57.0
Lsat_1_v5_gn_8_63881 Lactuca sativa HOM05D004690 ORTHO05D005527 7.1e-66 255.0 248 60.5
Lalb_Chr12g0198781 Lupinus albus HOM05D004690 ORTHO05D005527 1.2e-65 254.2 275 56.7
unitig_899.g15465 Utricularia gibba HOM05D004690 ORTHO05D005527 2.1e-65 253.4 221 67.0
Glyma.17G072300 Glycine max HOM05D004690 ORTHO05D005527 6.0e-65 251.9 272 57.4
FAN23G2407 Fragaria x ananassa HOM05D004690 ORTHO05D005527 1.0e-64 251.1 275 56.7
FAN23G2925 Fragaria x ananassa HOM05D004690 ORTHO05D005527 1.0e-64 251.1 275 56.7
ECA234G3490 Erigeron canadensis HOM05D004690 ORTHO05D005527 3.0e-64 249.6 252 58.3
Aqoxy7G03362 Aquilegia oxysepala HOM05D004690 ORTHO05D005527 8.7e-64 248.1 280 55.7
PSO782G2525 Papaver somniferum HOM05D004690 ORTHO05D005527 8.7e-64 248.1 285 54.7
Medtr4g130530 Medicago truncatula HOM05D004690 ORTHO05D005527 1.1e-63 247.7 265 55.8
PSO111G0014 Papaver somniferum HOM05D004690 ORTHO05D005527 1.1e-63 247.7 285 54.7
Haze_19160 Corylus avellana HOM05D004690 ORTHO05D005527 9.6e-63 244.6 311 51.1
Cc06_g14700 Coffea canephora HOM05D004690 ORTHO05D005527 1.3e-62 244.2 189 72.5
Psat7g006440 Pisum sativum HOM05D004690 ORTHO05D005527 1.3e-62 244.2 260 55.4
MD15G1150400 Malus domestica HOM05D004690 ORTHO05D005527 1.6e-62 243.8 219 62.1
ECA236G1766 Erigeron canadensis HOM05D004690 ORTHO05D005527 6.3e-62 241.9 221 63.8
Glyma.04G154000 Glycine max HOM05D004690 ORTHO05D005527 1.4e-61 240.7 196 64.8
QL02p093831 Quercus lobata HOM05D004690 ORTHO05D005527 4.1e-61 239.2 236 63.1
Sabra18G0089400 Salix brachista HOM05D004690 ORTHO05D005527 4.1e-61 239.2 281 52.7
SGA_v2.0_scaffold63G21785 Striga asiatica HOM05D004690 ORTHO05D005527 5.3e-61 238.8 293 51.5
Potri.006G182000 Populus trichocarpa HOM05D004690 ORTHO05D005527 9.0e-61 238.0 221 61.1
SalBow1G0331 Salvia bowleyana HOM05D004690 ORTHO05D005527 1.2e-60 237.7 256 55.1
DCAR_017916 Daucus carota HOM05D004690 ORTHO05D005527 3.8e-59 232.6 285 50.9
Ah.09g228780 Amaranthus hybridus HOM05D004690 ORTHO05D005527 8.5e-59 231.5 292 52.4
EL10Ac8g18927 Beta vulgaris HOM05D004690 ORTHO05D005527 7.9e-57 224.9 253 54.5
CDE02G3377 Ceratophyllum demersum HOM05D004690 ORTHO05D005527 1.8e-56 223.8 258 55.4
ClCG02G014380 Citrullus lanatus HOM05D004690 ORTHO05D005527 1.8e-56 223.8 257 54.1
MBI15_g27186_MAGBIO Magnolia biondii HOM05D004690 ORTHO05D005527 2.3e-56 223.4 217 59.4
MELO3C004125.2 Cucumis melo HOM05D004690 ORTHO05D005527 3.0e-56 223.0 268 54.1
vmacro16787 Vaccinium macrocarpon HOM05D004690 ORTHO05D005527 6.7e-56 221.9 332 43.7
Sc18g0003050 Simmondsia chinensis HOM05D004690 ORTHO05D005527 2.5e-55 219.9 265 55.1
Nitab4.5_0002611g0030 Nicotiana tabacum HOM05D004690 ORTHO05D005527 3.3e-55 219.5 167 70.7
CAN.G160.27 Capsicum annuum HOM05D004690 ORTHO05D005527 4.3e-55 219.2 167 74.3
Rhsim01G0027300 Rhododendron simsii HOM05D004690 ORTHO05D005527 1.3e-54 217.6 287 49.1
Hund08935 Selenicereus undatus HOM05D004690 ORTHO05D005527 1.3e-51 207.6 288 47.9
HPP92_018341 Vanilla planifolia HOM05D004690 ORTHO05D005527 5.5e-50 202.2 208 54.8
Carub.0007s0984 Capsella rubella HOM05D004690 ORTHO05D005527 2.1e-49 200.3 174 73.0
Zm00001eb257720 Zea mays HOM05D004690 ORTHO05D005527 4.6e-49 199.1 187 58.3
AUR62025348 Chenopodium quinoa HOM05D004690 ORTHO05D005527 7.9e-49 198.4 292 44.5
Lj7C462G3 Lonicera japonica HOM05D000062 ORTHO05D000043 7.9e-49 198.4 204 54.9
AUR62028351 Chenopodium quinoa HOM05D004690 ORTHO05D005527 2.3e-48 196.8 292 44.2
Oeu054265.1 Olea europaea HOM05D004690 ORTHO05D005527 3.0e-48 196.4 146 69.2
Aa31LG3G8690 Aethionema arabicum HOM05D004690 ORTHO05D005527 8.8e-48 194.9 112 91.1
Duzib150G0069 Durio zibethinus HOM05D004690 ORTHO05D005527 7.4e-47 191.8 264 43.9
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 2.8e-46 189.9 240 46.7
Os02g0794400 Oryza sativa ssp. japonica HOM05D004690 ORTHO05D005527 1.2e-44 184.5 187 58.3
CDE05G2888 Ceratophyllum demersum HOM05D004690 ORTHO05D005527 8.5e-43 178.3 180 53.3
Pp3c2_19940 Physcomitrium patens HOM05D004690 ORTHO05D005527 2.0e-39 167.2 253 43.5
Nn8g39977 Nelumbo nucifera HOM05D004690 ORTHO05D005527 5.7e-39 165.6 132 65.2
AagrBONN_evm.TU.Sc2ySwM_228.3886 Anthoceros agrestis HOM05D004690 ORTHO05D005527 1.1e-37 161.4 167 51.5
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 9.1e-37 158.3 237 43.0
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 5.9e-36 155.6 202 44.1
SMO353G0310 Selaginella moellendorffii HOM05D004690 ORTHO05D005527 2.5e-34 150.2 186 42.5
Manes.06G030800 Manihot esculenta HOM05D004690 ORTHO05D005527 2.3e-32 143.7 107 71.0
Ca_21146_v3 Cicer arietinum L. HOM05D004690 ORTHO05D005527 2.6e-31 140.2 103 68.0
MCO15G501 Micromonas commoda HOM05D004690 ORTHO05D005527 2.8e-30 136.7 181 43.1
PRCOL_00002519 Prasinoderma coloniale HOM05D004690 ORTHO05D005527 1.3e-27 127.9 201 39.3
Actinidia24377 Actinidia chinensis HOM05D004690 ORTHO05D005527 3.8e-27 126.3 92 68.5
BcaB06g27963 Brassica carinata HOM05D004690 ORTHO05D005527 5.0e-27 125.9 71 91.5
Actinidia38313 Actinidia chinensis HOM05D004690 ORTHO05D005527 4.0e-24 116.3 207 42.0
Nn8g39976 Nelumbo nucifera HOM05D004690 ORTHO05D005527 5.7e-23 112.5 145 50.3
PGSC0003DMG400017027 Solanum tuberosum HOM05D004690 ORTHO05D005527 5.7e-23 112.5 67 83.6
Hma1.2p1_0028F.1_g017670 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 2.8e-22 110.2 153 48.4
SEGI_13735 Sequoiadendron giganteum HOM05D004690 ORTHO05D005527 1.1e-21 108.2 127 47.2
Cfa021053 Carpinus fangiana HOM05D004690 ORTHO05D005527 9.1e-21 105.1 158 38.0
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 6.5e-19 99.0 85 55.3
HanXRQChr10g0314901 Helianthus annuus HOM05D000214 ORTHO05D000131 6.8e-16 89.0 76 60.5
Cre01.g001550 Chlamydomonas reinhardtii HOM05D004690 ORTHO05D005527 1.5e-15 87.8 143 34.3
SEGI_33455 Sequoiadendron giganteum HOM05D004690 ORTHO05D005527 3.4e-15 86.7 88 56.8
A02p43620 Brassica napus HOM05D004690 ORTHO05D005527 7.0e-13 79.0 44 86.4
A02p43630 Brassica napus HOM05D004690 ORTHO05D005527 7.0e-13 79.0 44 86.4
Dinv41359 Davidia involucrata HOM05D004690 ORTHO05D005527 1.3e-11 74.7 82 52.4
BolC2t11481H Brassica oleracea HOM05D004690 ORTHO05D005527 1.7e-11 74.3 38 94.7
FAN23G1872 Fragaria x ananassa HOM05D004690 ORTHO05D005527 5.0e-11 72.8 131 42.7
Ca_21142_v3 Cicer arietinum L. HOM05D004690 ORTHO05D005527 1.1e-10 71.6 128 39.8
Aa31LG8G14120 Aethionema arabicum HOM05D005442 ORTHO05D006450 2.5e-10 70.5 204 27.5
THA.LOC104807379 Tarenaya hassleriana HOM05D005442 ORTHO05D006450 2.1e-09 67.4 237 25.3
Sp3g30220 Schrenkiella parvula HOM05D005442 ORTHO05D006450 1.0e-08 65.1 184 30.4
ECA233G3196 Erigeron canadensis HOM05D005442 ORTHO05D006450 1.4e-08 64.7 192 28.1
BcaB03g16428 Brassica carinata HOM05D005442 ORTHO05D006450 3.0e-08 63.5 164 29.9
Thhalv10022629m.g Eutrema salsugineum HOM05D005442 ORTHO05D006450 4.0e-08 63.2 184 29.9
Mapoly0037s0141 Marchantia polymorpha HOM05D005442 ORTHO05D006450 4.0e-08 63.2 152 32.2
MBI11_g07617_MAGBIO Magnolia biondii HOM05D005442 ORTHO05D006450 5.2e-08 62.8 192 30.2
AT1G34360 Arabidopsis thaliana HOM05D005442 ORTHO05D006450 6.8e-08 62.4 219 29.2
BcaC06g36199 Brassica carinata HOM05D005442 ORTHO05D006450 8.9e-08 62.0 164 29.3
A07p04140 Brassica napus HOM05D005442 ORTHO05D006450 8.9e-08 62.0 164 29.3
C07p06570 Brassica napus HOM05D005442 ORTHO05D006450 8.9e-08 62.0 164 29.3
BolC7t41079H Brassica oleracea HOM05D005442 ORTHO05D006450 8.9e-08 62.0 164 29.3
BraA07t28205Z Brassica rapa HOM05D005442 ORTHO05D006450 8.9e-08 62.0 164 29.3
Oeu054266.1 Olea europaea HOM05D004690 ORTHO05D005527 8.9e-08 62.0 52 63.5
Pp3c27_2790 Physcomitrium patens HOM05D005442 ORTHO05D006450 1.2e-07 61.6 248 28.2
FvH4_2g15550 Fragaria vesca HOM05D005442 ORTHO05D006450 1.5e-07 61.2 123 30.1
FAN24G2500 Fragaria x ananassa HOM05D005442 ORTHO05D006450 1.5e-07 61.2 123 30.1
C06p03190 Brassica napus HOM05D004690 ORTHO05D005527 2.0e-07 60.8 29 96.6
RcHm_v2.0_Chr6g0278721 Rosa chinensis HOM05D005442 ORTHO05D006450 2.6e-07 60.5 123 38.2
FAN15G0807 Fragaria x ananassa HOM05D005442 ORTHO05D006450 3.4e-07 60.1 203 26.6
Carub.0001s3251 Capsella rubella HOM05D005442 ORTHO05D006450 4.4e-07 59.7 249 25.3
Pp3c16_14950 Physcomitrium patens HOM05D005442 ORTHO05D006450 4.4e-07 59.7 245 26.1
AL1G48920 Arabidopsis lyrata HOM05D005442 ORTHO05D006450 5.7e-07 59.3 203 29.6
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 7.5e-07 58.9 131 30.5
CBR_g29438 Chara braunii HOM05D005442 ORTHO05D006450 9.8e-07 58.5 122 31.1
FAN27G2972 Fragaria x ananassa HOM05D005442 ORTHO05D006450 1.3e-06 58.2 112 30.4
CDE04G0468 Ceratophyllum demersum HOM05D005442 ORTHO05D000996 2.9e-06 57.0 191 27.2
Dinv41924 Davidia involucrata HOM05D005442 ORTHO05D006450 2.9e-06 57.0 137 30.7
CARHR033820 Cardamine hirsuta HOM05D005442 ORTHO05D006450 3.7e-06 56.6 245 26.9
MSTRG.16924 Avicennia marina HOM05D005442 ORTHO05D006450 4.9e-06 56.2 188 26.6
BolC1t00805H Brassica oleracea HOM05D004690 ORTHO05D005527 4.9e-06 56.2 49 65.3
Lsat_1_v5_gn_6_13820 Lactuca sativa HOM05D005442 ORTHO05D006450 4.9e-06 56.2 210 23.8
CDE02G3112 Ceratophyllum demersum HOM05D005442 ORTHO05D006450 6.4e-06 55.8 201 26.4


User provided reference genes

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