Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC4t26787H Brassica oleracea HOM05D002272 ORTHO05D019870 1.2e-52 209.5 103 100.0
BolC6t38344H Brassica oleracea HOM05D002272 ORTHO05D019870 1.1e-42 176.4 103 88.3
BcaC02g08598 Brassica carinata HOM05D002055 ORTHO05D019870 5.1e-27 124.4 63 100.0
C06p32200 Brassica napus HOM05D002055 ORTHO05D019870 6.2e-25 117.5 64 92.2
BolC4t24931H Brassica oleracea HOM05D002055 ORTHO05D031805 2.1e-20 102.4 68 77.9
BcaC02g10038 Brassica carinata HOM05D002055 ORTHO05D031805 2.7e-20 102.1 115 54.8
C04p33630 Brassica napus HOM05D002055 ORTHO05D031805 4.6e-20 101.3 57 91.2
BcaB04g20838 Brassica carinata HOM05D002272 ORTHO05D005405 3.1e-16 88.6 58 72.4
BcaC02g08597 Brassica carinata HOM05D002272 ORTHO05D019870 6.9e-16 87.4 39 100.0
Thhalv10021142m.g Eutrema salsugineum HOM05D002272 ORTHO05D005405 6.9e-16 87.4 58 70.7
BcaC02g11409 Brassica carinata HOM05D002272 ORTHO05D019870 1.5e-15 86.3 51 82.4
Aa31LG8G4410 Aethionema arabicum HOM05D002272 ORTHO05D005405 2.0e-15 85.9 58 70.7
C01p46710 Brassica napus HOM05D002272 ORTHO05D005405 2.0e-15 85.9 58 70.7
BolC1t04639H Brassica oleracea HOM05D002272 ORTHO05D005405 2.0e-15 85.9 58 70.7
C05p48970 Brassica napus HOM05D002272 ORTHO05D005405 2.6e-15 85.5 60 71.7
BolC5t33637H Brassica oleracea HOM05D002272 ORTHO05D005405 2.6e-15 85.5 60 71.7
Sp3g15640 Schrenkiella parvula HOM05D002272 ORTHO05D005405 2.6e-15 85.5 58 70.7
BraA01t03740Z Brassica rapa HOM05D002272 ORTHO05D005405 3.4e-15 85.1 58 70.7
PGR004G1245 Punica granatum HOM05D002272 ORTHO05D005405 5.8e-15 84.3 58 65.5
Carub.0003s1719 Capsella rubella HOM05D002272 ORTHO05D005405 9.9e-15 83.6 58 70.7
AT3G17465 Arabidopsis thaliana HOM05D002272 ORTHO05D005405 1.3e-14 83.2 58 67.2
BcaC05g28788 Brassica carinata HOM05D002272 ORTHO05D005405 1.3e-14 83.2 58 70.7
A05p32330 Brassica napus HOM05D002272 ORTHO05D005405 1.3e-14 83.2 58 70.7
BraA05t22061Z Brassica rapa HOM05D002272 ORTHO05D005405 1.3e-14 83.2 58 70.7
Sabra10G0001800 Salix brachista HOM05D002272 ORTHO05D005405 1.3e-14 83.2 58 63.8
arahy.Tifrunner.gnm1.ann1.IDQN4N Arachis hypogaea HOM05D002272 ORTHO05D005405 1.7e-14 82.8 62 56.5
BcaB06g25841 Brassica carinata HOM05D002272 ORTHO05D005405 1.7e-14 82.8 58 70.7
Gohir.A02G058500 Gossypium hirsutum HOM05D002272 ORTHO05D005405 1.7e-14 82.8 58 65.5
Gohir.D02G064300 Gossypium hirsutum HOM05D002272 ORTHO05D005405 1.7e-14 82.8 58 65.5
Gorai.005G072600 Gossypium raimondii HOM05D002272 ORTHO05D005405 1.7e-14 82.8 58 65.5
Potri.010G002300 Populus trichocarpa HOM05D002272 ORTHO05D005405 1.7e-14 82.8 58 62.1
THA.LOC104815360 Tarenaya hassleriana HOM05D002272 ORTHO05D005405 1.7e-14 82.8 60 66.7
CARHR092790 Cardamine hirsuta HOM05D002272 ORTHO05D005405 2.2e-14 82.4 58 65.5
Potri.008G207000 Populus trichocarpa HOM05D002272 ORTHO05D005405 2.2e-14 82.4 58 60.3
Sabra08G0150200 Salix brachista HOM05D002272 ORTHO05D005405 2.2e-14 82.4 58 60.3
AL3G30550 Arabidopsis lyrata HOM05D002272 ORTHO05D005405 2.9e-14 82.0 58 67.2
BcaB04g18943 Brassica carinata HOM05D002272 ORTHO05D005405 2.9e-14 82.0 58 69.0
A01p36790 Brassica napus HOM05D002272 ORTHO05D005405 2.9e-14 82.0 58 69.0
TWI75G1791 Tripterygium wilfordii HOM05D002272 ORTHO05D005405 2.9e-14 82.0 58 63.8
vmacro08012 Vaccinium macrocarpon HOM05D002272 ORTHO05D005405 2.9e-14 82.0 58 62.1
Oeu035504.2 Olea europaea HOM05D002272 ORTHO05D005405 3.8e-14 81.6 58 60.3
TPR.G18850 Trifolium pratense HOM05D002272 ORTHO05D005405 3.8e-14 81.6 58 62.1
Cpa.g.sc146.23 Carica papaya HOM05D002272 ORTHO05D005405 6.4e-14 80.9 58 60.3
arahy.Tifrunner.gnm1.ann1.E0PE5U Arachis hypogaea HOM05D002272 ORTHO05D005405 8.4e-14 80.5 58 58.6
arahy.Tifrunner.gnm1.ann1.Z0DKXY Arachis hypogaea HOM05D002272 ORTHO05D005405 8.4e-14 80.5 58 58.6
CiPaw.02G069200 Carya illinoinensis HOM05D002272 ORTHO05D005405 8.4e-14 80.5 58 62.1
Lj3g0022905 Lotus japonicus HOM05D002272 ORTHO05D005405 8.4e-14 80.5 51 70.6
Sc18g0007250 Simmondsia chinensis HOM05D002272 ORTHO05D005405 8.4e-14 80.5 58 62.1
TPR.G2257 Trifolium pratense HOM05D002272 ORTHO05D005405 8.4e-14 80.5 58 62.1
Rhsim04G0248300 Rhododendron simsii HOM05D002272 ORTHO05D005405 1.1e-13 80.1 58 60.3
BcaC03g16186 Brassica carinata HOM05D002055 ORTHO05D002120 1.4e-13 79.7 58 70.7
A02p25010 Brassica napus HOM05D002055 ORTHO05D002120 1.4e-13 79.7 58 70.7
C02p39640 Brassica napus HOM05D002055 ORTHO05D002120 1.4e-13 79.7 58 70.7
BolC2t09980H Brassica oleracea HOM05D002055 ORTHO05D002120 1.4e-13 79.7 58 70.7
BraA02t07490Z Brassica rapa HOM05D002055 ORTHO05D002120 1.4e-13 79.7 58 70.7
CSS0028739 Camellia sinensis var. sinensis HOM05D002272 ORTHO05D005405 1.9e-13 79.3 51 68.6
CANSAT78G0846 Cannabis sativa HOM05D002272 ORTHO05D005405 1.9e-13 79.3 73 52.1
Duzib212G0306 Durio zibethinus HOM05D002272 ORTHO05D005405 1.9e-13 79.3 60 60.0
MD13G1139500 Malus domestica HOM05D002272 ORTHO05D005405 1.9e-13 79.3 51 70.6
MD16G1136200 Malus domestica HOM05D002272 ORTHO05D005405 1.9e-13 79.3 51 70.6
arahy.Tifrunner.gnm1.ann1.39Z329 Arachis hypogaea HOM05D002272 ORTHO05D005405 2.4e-13 79.0 60 58.3
CiPaw.01G129200 Carya illinoinensis HOM05D002272 ORTHO05D005405 2.4e-13 79.0 58 63.8
Dinv29507 Davidia involucrata HOM05D002272 ORTHO05D005405 2.4e-13 79.0 51 70.6
Psat1g056160 Pisum sativum HOM05D002272 ORTHO05D005405 2.4e-13 79.0 51 68.6
ClCG05G006870 Citrullus lanatus HOM05D002272 ORTHO05D005405 3.2e-13 78.6 58 58.6
Sed0028101 Sechium edule HOM05D002272 ORTHO05D005405 3.2e-13 78.6 58 58.6
Phvul.005G012100 Phaseolus vulgaris HOM05D002272 ORTHO05D005405 4.2e-13 78.2 51 66.7
Rhsim10G0078600 Rhododendron simsii HOM05D002272 ORTHO05D005405 4.2e-13 78.2 58 60.3
EL10Ac5g11978 Beta vulgaris HOM05D002272 ORTHO05D005405 5.4e-13 77.8 58 60.3
AUR62007379 Chenopodium quinoa HOM05D002272 ORTHO05D005405 5.4e-13 77.8 58 60.3
AUR62018609 Chenopodium quinoa HOM05D002272 ORTHO05D005405 5.4e-13 77.8 58 60.3
Glyma.12G225000 Glycine max HOM05D002272 ORTHO05D005405 5.4e-13 77.8 58 56.9
Lj6A701G45 Lonicera japonica HOM05D002272 ORTHO05D005405 5.4e-13 77.8 51 66.7
COL.COLO4_34516 Corchorus olitorius HOM05D002272 ORTHO05D005405 7.1e-13 77.4 58 58.6
Mapoly0162s0018 Marchantia polymorpha HOM05D002272 ORTHO05D005405 7.1e-13 77.4 58 53.4
Prupe.1G105200 Prunus persica HOM05D002272 ORTHO05D005405 7.1e-13 77.4 51 68.6
QL06p014217 Quercus lobata HOM05D002272 ORTHO05D005405 7.1e-13 77.4 60 58.3
TAR365G0404 Trochodendron aralioides HOM05D002272 ORTHO05D005405 7.1e-13 77.4 60 60.0
TAR636G1706 Trochodendron aralioides HOM05D002272 ORTHO05D005405 7.1e-13 77.4 58 58.6
Actinidia18507 Actinidia chinensis HOM05D002272 ORTHO05D005405 9.3e-13 77.0 58 56.9
Glyma.13G276300 Glycine max HOM05D002272 ORTHO05D005405 9.3e-13 77.0 51 64.7
HPP92_026061 Vanilla planifolia HOM05D002272 ORTHO05D005405 9.3e-13 77.0 58 56.9
VMungo1080G0714 Vigna mungo HOM05D002272 ORTHO05D005405 9.3e-13 77.0 51 64.7
Nn4g26701 Nelumbo nucifera HOM05D002272 ORTHO05D005405 1.2e-12 76.6 52 63.5
Actinidia01065 Actinidia chinensis HOM05D002272 ORTHO05D005405 1.6e-12 76.3 51 66.7
Lalb_Chr04g0247221 Lupinus albus HOM05D002272 ORTHO05D005405 1.6e-12 76.3 39 76.9
Medtr1g093060 Medicago truncatula HOM05D002272 ORTHO05D005405 1.6e-12 76.3 51 66.7
GSVIVG01017688001 Vitis vinifera HOM05D002272 ORTHO05D005405 1.6e-12 76.3 54 66.7
Carub.0006s3420 Capsella rubella HOM05D002055 ORTHO05D002120 2.1e-12 75.9 55 70.9
Eucgr.H04124 Eucalyptus grandis HOM05D002272 ORTHO05D005405 2.1e-12 75.9 58 60.3
FvH4_4g21510 Fragaria vesca HOM05D002272 ORTHO05D005405 2.1e-12 75.9 51 64.7
FAN07G0753 Fragaria x ananassa HOM05D002272 ORTHO05D005405 2.1e-12 75.9 51 64.7
FAN12G3762 Fragaria x ananassa HOM05D002272 ORTHO05D005405 2.1e-12 75.9 51 64.7
FAN17G2520 Fragaria x ananassa HOM05D002272 ORTHO05D005405 2.1e-12 75.9 51 64.7
HanXRQChr05g0149261 Helianthus annuus HOM05D002272 ORTHO05D005405 2.1e-12 75.9 51 64.7
Medtr6g006970 Medicago truncatula HOM05D002272 ORTHO05D005405 2.1e-12 75.9 51 64.7
RcHm_v2.0_Chr4g0427531 Rosa chinensis HOM05D002272 ORTHO05D005405 2.1e-12 75.9 51 64.7
Cfa015730 Carpinus fangiana HOM05D002272 ORTHO05D005405 2.7e-12 75.5 58 58.6
Sed0025255 Sechium edule HOM05D002272 ORTHO05D005405 2.7e-12 75.5 58 58.6
Zm00001eb333790 Zea mays HOM05D002272 ORTHO05D005405 2.7e-12 75.5 58 51.7
CSS0045814 Camellia sinensis var. sinensis HOM05D002272 ORTHO05D005405 3.5e-12 75.1 39 79.5
CAN.G407.30 Capsicum annuum HOM05D002272 ORTHO05D005405 3.5e-12 75.1 71 50.7
MELO3C006752.2 Cucumis melo HOM05D002272 ORTHO05D005405 3.5e-12 75.1 58 55.2
DCAR_002551 Daucus carota HOM05D002272 ORTHO05D005405 3.5e-12 75.1 51 64.7
Dinv18018 Davidia involucrata HOM05D002272 ORTHO05D005405 3.5e-12 75.1 51 66.7
Os01g0251100 Oryza sativa ssp. japonica HOM05D002272 ORTHO05D005405 3.5e-12 75.1 58 51.7
PSO541G1920 Papaver somniferum HOM05D002272 ORTHO05D005405 3.5e-12 75.1 54 64.8
PSO761G0243 Papaver somniferum HOM05D002272 ORTHO05D005405 3.5e-12 75.1 54 64.8
PGSC0003DMG400014202 Solanum tuberosum HOM05D002272 ORTHO05D005405 3.5e-12 75.1 71 52.1
ATR0796G018 Amborella trichopoda HOM05D002272 ORTHO05D005405 4.6e-12 74.7 58 53.4
Ca_06467_v3 Cicer arietinum L. HOM05D002272 ORTHO05D005405 4.6e-12 74.7 51 62.7
Haze_00766 Corylus avellana HOM05D002272 ORTHO05D005405 4.6e-12 74.7 60 58.3
Nitab4.5_0001437g0040 Nicotiana tabacum HOM05D002272 ORTHO05D005405 4.6e-12 74.7 51 64.7
SHI00050 Sapria himalayana HOM05D002272 ORTHO05D005405 4.6e-12 74.7 58 53.4
Sopen03g036210 Solanum pennellii HOM05D002272 ORTHO05D005405 4.6e-12 74.7 71 50.7
Thecc.04G313100 Theobroma cacao HOM05D002272 ORTHO05D005405 4.6e-12 74.7 58 58.6
Ah.07g201130 Amaranthus hybridus HOM05D002272 ORTHO05D005405 6.0e-12 74.3 58 56.9
AT4G02860 Arabidopsis thaliana HOM05D002055 ORTHO05D002120 6.0e-12 74.3 55 70.9
arahy.Tifrunner.gnm1.ann1.VQU8DB Arachis hypogaea HOM05D002272 ORTHO05D005405 6.0e-12 74.3 60 53.3
MSTRG.10168 Avicennia marina HOM05D002272 ORTHO05D005405 6.0e-12 74.3 51 66.7
Hma1.2p1_0013F.1_g007910 Hydrangea macrophylla HOM05D002272 ORTHO05D005405 6.0e-12 74.3 39 74.4
Manes.02G178300 Manihot esculenta HOM05D002272 ORTHO05D005405 6.0e-12 74.3 60 53.3
Hund14390 Selenicereus undatus HOM05D002272 ORTHO05D005405 6.0e-12 74.3 58 53.4
CDE01G0206 Ceratophyllum demersum HOM05D002272 ORTHO05D005405 7.8e-12 73.9 52 63.5
MBI13_g24903_MAGBIO Magnolia biondii HOM05D002272 ORTHO05D005405 7.8e-12 73.9 39 79.5
Nitab4.5_0002322g0100 Nicotiana tabacum HOM05D002272 ORTHO05D005405 7.8e-12 73.9 51 64.7
Nitab4.5_0005622g0030 Nicotiana tabacum HOM05D002272 ORTHO05D005405 7.8e-12 73.9 71 50.7
PSO210G1506 Papaver somniferum HOM05D002272 ORTHO05D005405 7.8e-12 73.9 54 63.0
SGA_v2.0_scaffold157G37389 Striga asiatica HOM05D002272 ORTHO05D005405 7.8e-12 73.9 51 64.7
BcaB05g23668 Brassica carinata HOM05D002055 ORTHO05D002120 1.0e-11 73.6 47 80.9
CDE12G0965 Ceratophyllum demersum HOM05D002272 ORTHO05D005405 1.0e-11 73.6 52 61.5
ECA246G1461 Erigeron canadensis HOM05D002272 ORTHO05D005405 1.0e-11 73.6 58 53.4
Lsat_1_v5_gn_6_118081 Lactuca sativa HOM05D002272 ORTHO05D005405 1.0e-11 73.6 51 62.7
unitig_8.g3105 Utricularia gibba HOM05D002272 ORTHO05D005405 1.0e-11 73.6 39 71.8
AL6G50060 Arabidopsis lyrata HOM05D002055 ORTHO05D002120 1.3e-11 73.2 55 70.9
Peaxi162Scf00126g01027 Petunia axillaris HOM05D002272 ORTHO05D005405 1.3e-11 73.2 39 74.4
PGSC0003DMG401013065 Solanum tuberosum HOM05D002272 ORTHO05D005405 1.3e-11 73.2 58 56.9
SalBow8G2239 Salvia bowleyana HOM05D002272 ORTHO05D005405 1.7e-11 72.8 58 62.1
VMungo0331G0401 Vigna mungo HOM05D002272 ORTHO05D005405 1.7e-11 72.8 51 60.8
Aqoxy5G02803 Aquilegia oxysepala HOM05D002272 ORTHO05D005405 2.3e-11 72.4 39 74.4
CsaV3_3G015540 Cucumis sativus L. HOM05D002272 ORTHO05D005405 2.3e-11 72.4 58 53.4
Ciclev10007196m.g Citrus clementina HOM05D002272 ORTHO05D005405 3.0e-11 72.0 60 58.3
Migut.G00004 Erythranthe guttata HOM05D002272 ORTHO05D005405 3.0e-11 72.0 52 61.5
Migut.O00400 Erythranthe guttata HOM05D002272 ORTHO05D005405 3.0e-11 72.0 52 61.5
Migut.O00895 Erythranthe guttata HOM05D002272 ORTHO05D005405 3.0e-11 72.0 52 61.5
Atru.chr4.3151 Acer truncatum HOM05D002272 ORTHO05D005405 8.7e-11 70.5 60 53.3
Thhalv10028852m.g Eutrema salsugineum HOM05D002055 ORTHO05D002120 8.7e-11 70.5 55 65.5
CARHR251250 Cardamine hirsuta HOM05D002055 ORTHO05D002120 1.5e-10 69.7 57 66.7
SEGI_07728 Sequoiadendron giganteum HOM05D002272 ORTHO05D005405 2.5e-10 68.9 39 71.8
Pp3c23_18210 Physcomitrium patens HOM05D002272 ORTHO05D005405 1.6e-09 66.2 54 50.0
SMO119G0282 Selaginella moellendorffii HOM05D002272 ORTHO05D005405 2.1e-09 65.9 38 63.2
CARHR251260 Cardamine hirsuta HOM05D002055 ORTHO05D002120 2.8e-09 65.5 57 64.9
Cc03_g00130 Coffea canephora HOM05D002272 ORTHO05D005405 2.8e-09 65.5 51 60.8
Sp6g02910 Schrenkiella parvula HOM05D002055 ORTHO05D002120 4.8e-09 64.7 47 70.2
Aa31LG5G2390 Aethionema arabicum HOM05D002055 ORTHO05D002120 3.1e-08 62.0 47 70.2
CBR_g27892 Chara braunii HOM05D002272 ORTHO05D005405 6.9e-08 60.8 36 55.6
Gohir.D08G077150 Gossypium hirsutum HOM05D002055 ORTHO05D002120 3.4e-07 58.5 61 49.2
Thhalv10008339m.g Eutrema salsugineum HOM05D002055 ORTHO05D002120 4.5e-07 58.2 52 57.7
MCO04G432 Micromonas commoda HOM05D002272 ORTHO05D005405 4.5e-07 58.2 56 46.4
Carub.0004s0501 Capsella rubella HOM05D002055 ORTHO05D002120 2.9e-06 55.5 62 51.6
Sp6g02890 Schrenkiella parvula HOM05D002055 ORTHO05D002120 2.9e-06 55.5 53 54.7
Gorai.004G081900 Gossypium raimondii HOM05D002055 ORTHO05D002120 3.8e-06 55.1 61 47.5
BolC3t16039H Brassica oleracea HOM05D002055 ORTHO05D002120 4.9e-06 54.7 69 44.9
Thecc.01G282300 Theobroma cacao HOM05D002055 ORTHO05D002120 4.9e-06 54.7 62 50.0


User provided reference genes

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