Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC4t26483H Brassica oleracea HOM05D002462 ORTHO05D002893 1.9e-46 188.7 91 100.0
C04p49010 Brassica napus HOM05D002462 ORTHO05D002893 4.9e-26 120.9 57 98.2
A09p63960 Brassica napus HOM05D002462 ORTHO05D002893 2.1e-24 115.5 97 60.8
BraA09t41742Z Brassica rapa HOM05D002462 ORTHO05D002893 2.1e-24 115.5 97 60.8
C08p47480 Brassica napus HOM05D002462 ORTHO05D002893 3.5e-24 114.8 97 59.8
BolC8t52289H Brassica oleracea HOM05D002462 ORTHO05D002893 3.5e-24 114.8 97 59.8
BcaC07g41712 Brassica carinata HOM05D002462 ORTHO05D002893 6.0e-24 114.0 97 59.8
BcaB08g34470 Brassica carinata HOM05D002462 ORTHO05D002893 6.7e-23 110.5 97 58.8
BcaC07g42570 Brassica carinata HOM05D002462 ORTHO05D002893 1.9e-22 109.0 97 56.7
AL2G13050 Arabidopsis lyrata HOM05D002462 ORTHO05D002893 5.9e-19 97.4 97 50.5
BcaB07g31355 Brassica carinata HOM05D002462 ORTHO05D002893 5.9e-19 97.4 97 50.5
BcaC04g22442 Brassica carinata HOM05D002462 ORTHO05D002893 5.9e-19 97.4 97 50.5
BcaC04g22747 Brassica carinata HOM05D002462 ORTHO05D002893 5.9e-19 97.4 97 50.5
BcaC06g31908 Brassica carinata HOM05D002462 ORTHO05D002893 5.9e-19 97.4 97 50.5
A09p13220 Brassica napus HOM05D002462 ORTHO05D002893 5.9e-19 97.4 97 50.5
A09p16040 Brassica napus HOM05D002462 ORTHO05D002893 5.9e-19 97.4 97 50.5
C09p15710 Brassica napus HOM05D002462 ORTHO05D002893 5.9e-19 97.4 97 50.5
C09p19290 Brassica napus HOM05D002462 ORTHO05D002893 5.9e-19 97.4 97 50.5
BolC9t54477H Brassica oleracea HOM05D002462 ORTHO05D002893 5.9e-19 97.4 97 50.5
BolC9t54840H Brassica oleracea HOM05D002462 ORTHO05D002893 5.9e-19 97.4 97 50.5
BraA09t36968Z Brassica rapa HOM05D002462 ORTHO05D002893 5.9e-19 97.4 97 50.5
BraA09t37240Z Brassica rapa HOM05D002462 ORTHO05D002893 5.9e-19 97.4 97 50.5
Carub.0002s0224 Capsella rubella HOM05D002462 ORTHO05D002893 5.9e-19 97.4 97 50.5
Thhalv10023385m.g Eutrema salsugineum HOM05D002462 ORTHO05D002893 5.9e-19 97.4 97 50.5
Sp2g01900 Schrenkiella parvula HOM05D002462 ORTHO05D002893 5.9e-19 97.4 97 50.5
CARHR049100 Cardamine hirsuta HOM05D002462 ORTHO05D002893 7.6e-19 97.1 97 50.5
CDE02G3257 Ceratophyllum demersum HOM05D002462 ORTHO05D002893 1.0e-18 96.7 97 48.5
Gohir.A11G019800 Gossypium hirsutum HOM05D002462 ORTHO05D002893 1.0e-18 96.7 97 49.5
Gohir.D11G019500 Gossypium hirsutum HOM05D002462 ORTHO05D002893 1.0e-18 96.7 97 49.5
Gorai.007G020800 Gossypium raimondii HOM05D002462 ORTHO05D002893 1.0e-18 96.7 97 49.5
Eucgr.D02024 Eucalyptus grandis HOM05D002462 ORTHO05D002893 1.3e-18 96.3 97 49.5
PGR031G0384 Punica granatum HOM05D002462 ORTHO05D002893 1.3e-18 96.3 97 48.5
Aa31LG2G280 Aethionema arabicum HOM05D002462 ORTHO05D002893 1.7e-18 95.9 97 50.5
ECA240G0840 Erigeron canadensis HOM05D002462 ORTHO05D002893 1.7e-18 95.9 97 47.4
HanXRQChr13g0417111 Helianthus annuus HOM05D002462 ORTHO05D002893 1.7e-18 95.9 97 47.4
Thecc.03G258100 Theobroma cacao HOM05D002462 ORTHO05D002893 1.7e-18 95.9 97 49.5
Carub.0006s3155 Capsella rubella HOM05D002462 ORTHO05D002893 2.2e-18 95.5 97 47.4
Potri.001G119500 Populus trichocarpa HOM05D002462 ORTHO05D002893 2.2e-18 95.5 97 48.5
Sp6g05150 Schrenkiella parvula HOM05D002462 ORTHO05D002893 2.2e-18 95.5 102 47.1
AT1G62740 Arabidopsis thaliana HOM05D002462 ORTHO05D002893 2.9e-18 95.1 97 49.5
CDE04G1681 Ceratophyllum demersum HOM05D002462 ORTHO05D002893 3.8e-18 94.7 97 46.4
Duzib084G0510 Durio zibethinus HOM05D002462 ORTHO05D002893 3.8e-18 94.7 97 48.5
Duzib068G0944 Durio zibethinus HOM05D002462 ORTHO05D002893 5.0e-18 94.4 97 47.4
Migut.A00862 Erythranthe guttata HOM05D002462 ORTHO05D002893 5.0e-18 94.4 97 47.4
TAR375G0572 Trochodendron aralioides HOM05D002462 ORTHO05D002893 5.0e-18 94.4 97 47.4
CANSAT21G2229 Cannabis sativa HOM05D002462 ORTHO05D002893 6.5e-18 94.0 97 48.5
Manes.01G075100 Manihot esculenta HOM05D002462 ORTHO05D002893 6.5e-18 94.0 97 47.4
Peaxi162Scf00102g01138 Petunia axillaris HOM05D002462 ORTHO05D002893 6.5e-18 94.0 97 47.4
SHI13843 Sapria himalayana HOM05D002462 ORTHO05D002893 6.5e-18 94.0 97 47.4
AT4G12400 Arabidopsis thaliana HOM05D002462 ORTHO05D002893 8.5e-18 93.6 97 46.4
Cfa012782 Carpinus fangiana HOM05D002462 ORTHO05D002893 8.5e-18 93.6 97 48.5
COL.COLO4_37230 Corchorus olitorius HOM05D002462 ORTHO05D002893 8.5e-18 93.6 97 47.4
Haze_08589 Corylus avellana HOM05D002462 ORTHO05D002893 8.5e-18 93.6 97 48.5
DCAR_008462 Daucus carota HOM05D002462 ORTHO05D002893 8.5e-18 93.6 99 48.5
Nitab4.5_0004059g0030 Nicotiana tabacum HOM05D002462 ORTHO05D002893 8.5e-18 93.6 97 46.4
SGA_v2.0_scaffold146G36168 Striga asiatica HOM05D002462 ORTHO05D002893 8.5e-18 93.6 97 48.5
THA.LOC104813761 Tarenaya hassleriana HOM05D002462 ORTHO05D002893 8.5e-18 93.6 97 46.4
unitig_699.g19762 Utricularia gibba HOM05D002462 ORTHO05D002893 8.5e-18 93.6 97 47.4
Duzib205G1879 Durio zibethinus HOM05D002462 ORTHO05D002893 1.1e-17 93.2 97 46.4
MBI12_g24113_MAGBIO Magnolia biondii HOM05D002462 ORTHO05D002893 1.1e-17 93.2 97 46.4
Prupe.5G076500 Prunus persica HOM05D002462 ORTHO05D002893 1.1e-17 93.2 97 47.4
QL12p014153 Quercus lobata HOM05D002462 ORTHO05D002893 1.1e-17 93.2 97 47.4
TWI60G0325 Tripterygium wilfordii HOM05D002462 ORTHO05D002893 1.1e-17 93.2 97 47.4
A02p25640 Brassica napus HOM05D002462 ORTHO05D002893 1.4e-17 92.8 97 46.4
BraA02t07556Z Brassica rapa HOM05D002462 ORTHO05D002893 1.4e-17 92.8 97 46.4
Ca_06698_v3 Cicer arietinum L. HOM05D002462 ORTHO05D002893 1.4e-17 92.8 97 47.4
Manes.02G035100 Manihot esculenta HOM05D002462 ORTHO05D002893 1.4e-17 92.8 97 45.4
TWI81G0229 Tripterygium wilfordii HOM05D002462 ORTHO05D002893 1.4e-17 92.8 97 47.4
arahy.Tifrunner.gnm1.ann1.1QL5BR Arachis hypogaea HOM05D002462 ORTHO05D002893 1.9e-17 92.4 97 47.4
arahy.Tifrunner.gnm1.ann1.WE9979 Arachis hypogaea HOM05D002462 ORTHO05D002893 1.9e-17 92.4 97 47.4
BcaC03g16282 Brassica carinata HOM05D002462 ORTHO05D002893 1.9e-17 92.4 97 46.4
C02p40780 Brassica napus HOM05D002462 ORTHO05D002893 1.9e-17 92.4 97 46.4
BolC2t10095H Brassica oleracea HOM05D002462 ORTHO05D002893 1.9e-17 92.4 97 46.4
CAN.G1337.27 Capsicum annuum HOM05D002462 ORTHO05D002893 1.9e-17 92.4 97 47.4
DCAR_008463 Daucus carota HOM05D002462 ORTHO05D002893 1.9e-17 92.4 97 48.5
Thhalv10028542m.g Eutrema salsugineum HOM05D002462 ORTHO05D002893 1.9e-17 92.4 97 46.4
CDE11G0967 Ceratophyllum demersum HOM05D002462 ORTHO05D002893 2.5e-17 92.0 97 45.4
Ciclev10019462m.g Citrus clementina HOM05D002462 ORTHO05D002893 2.5e-17 92.0 97 46.4
Gohir.A09G195100 Gossypium hirsutum HOM05D002462 ORTHO05D002893 2.5e-17 92.0 97 46.4
Gohir.D09G189700 Gossypium hirsutum HOM05D002462 ORTHO05D002893 2.5e-17 92.0 97 46.4
Gorai.006G212300 Gossypium raimondii HOM05D002462 ORTHO05D002893 2.5e-17 92.0 97 46.4
TPR.G25918 Trifolium pratense HOM05D002462 ORTHO05D002893 2.5e-17 92.0 97 46.4
Actinidia05180 Actinidia chinensis HOM05D002462 ORTHO05D002893 3.2e-17 91.7 97 45.4
arahy.Tifrunner.gnm1.ann1.NYXY9W Arachis hypogaea HOM05D002462 ORTHO05D002893 3.2e-17 91.7 99 46.5
Cpa.g.sc29.105 Carica papaya HOM05D002462 ORTHO05D002893 3.2e-17 91.7 97 45.4
Nitab4.5_0001707g0050 Nicotiana tabacum HOM05D002462 ORTHO05D002893 3.2e-17 91.7 96 46.9
Oeu004005.1 Olea europaea HOM05D002462 ORTHO05D002893 3.2e-17 91.7 97 47.4
TAR374G0023 Trochodendron aralioides HOM05D002462 ORTHO05D002893 3.2e-17 91.7 97 44.3
CARHR253800 Cardamine hirsuta HOM05D002462 ORTHO05D002893 4.2e-17 91.3 97 46.4
CiPaw.11G149600 Carya illinoinensis HOM05D002462 ORTHO05D002893 4.2e-17 91.3 97 46.4
CiPaw.12G106100 Carya illinoinensis HOM05D002462 ORTHO05D002893 4.2e-17 91.3 97 45.4
SGA_v2.0_scaffold120G32841 Striga asiatica HOM05D002462 ORTHO05D002893 4.2e-17 91.3 97 47.4
MSTRG.12074 Avicennia marina HOM05D002462 ORTHO05D002893 5.5e-17 90.9 97 46.4
Lj8A256T45 Lonicera japonica HOM05D002462 ORTHO05D002893 5.5e-17 90.9 97 44.3
Oeu016522.2 Olea europaea HOM05D002462 ORTHO05D002893 5.5e-17 90.9 97 45.4
arahy.Tifrunner.gnm1.ann1.5L85H8 Arachis hypogaea HOM05D002462 ORTHO05D002893 7.2e-17 90.5 97 46.4
Glyma.11G030500 Glycine max HOM05D002462 ORTHO05D002893 7.2e-17 90.5 97 45.4
Medtr5g012030 Medicago truncatula HOM05D002462 ORTHO05D002893 7.2e-17 90.5 97 45.4
Phvul.002G060800 Phaseolus vulgaris HOM05D002462 ORTHO05D002893 7.2e-17 90.5 99 45.5
BcaB05g23745 Brassica carinata HOM05D002462 ORTHO05D002893 9.3e-17 90.1 97 46.4
CSS0010993 Camellia sinensis var. sinensis HOM05D002462 ORTHO05D002893 9.3e-17 90.1 97 45.4
Hma1.2p1_2244F.1_g317950 Hydrangea macrophylla HOM05D002462 ORTHO05D002893 9.3e-17 90.1 103 43.7
Os02g0644100 Oryza sativa ssp. japonica HOM05D002462 ORTHO05D002893 9.3e-17 90.1 97 44.3
Potri.003G113400 Populus trichocarpa HOM05D002462 ORTHO05D002893 9.3e-17 90.1 97 45.4
Sabra03G0078600 Salix brachista HOM05D002462 ORTHO05D002893 9.3e-17 90.1 97 46.4
Hma1.2p1_0367F.1_g136990 Hydrangea macrophylla HOM05D002462 ORTHO05D002893 1.2e-16 89.7 97 44.3
FvH4_5g00400 Fragaria vesca HOM05D002462 ORTHO05D002893 1.6e-16 89.4 102 44.1
Glyma.01G211200 Glycine max HOM05D002462 ORTHO05D002893 1.6e-16 89.4 97 44.3
Lalb_Chr16g0379771 Lupinus albus HOM05D002462 ORTHO05D002893 1.6e-16 89.4 97 45.4
Aa31LG9G10210 Aethionema arabicum HOM05D002462 ORTHO05D002893 2.1e-16 89.0 97 45.4
MSTRG.25540 Avicennia marina HOM05D002462 ORTHO05D002893 2.1e-16 89.0 97 45.4
ClCG10G003040 Citrullus lanatus HOM05D002462 ORTHO05D002893 2.1e-16 89.0 99 44.4
Lj2A210T55 Lonicera japonica HOM05D002462 ORTHO05D002893 2.1e-16 89.0 97 44.3
RcHm_v2.0_Chr7g0202131 Rosa chinensis HOM05D002462 ORTHO05D002893 2.1e-16 89.0 97 45.4
PGSC0003DMG400012480 Solanum tuberosum HOM05D002462 ORTHO05D002893 2.1e-16 89.0 97 44.3
Glyma.05G055600 Glycine max HOM05D002462 ORTHO05D002893 2.7e-16 88.6 97 46.4
MD06G1065400 Malus domestica HOM05D002462 ORTHO05D002893 2.7e-16 88.6 97 45.4
VMungo1215G1797 Vigna mungo HOM05D002462 ORTHO05D002893 2.7e-16 88.6 97 44.3
Atru.chr9.1394 Acer truncatum HOM05D002462 ORTHO05D002893 4.6e-16 87.8 97 44.3
CsaV3_3G003080 Cucumis sativus L. HOM05D002462 ORTHO05D002893 4.6e-16 87.8 97 44.3
FAN04G0334 Fragaria x ananassa HOM05D002462 ORTHO05D002893 4.6e-16 87.8 97 44.3
FAN08G1841 Fragaria x ananassa HOM05D002462 ORTHO05D002893 4.6e-16 87.8 97 44.3
FAN13G1222 Fragaria x ananassa HOM05D002462 ORTHO05D002893 4.6e-16 87.8 97 44.3
FAN18G0067 Fragaria x ananassa HOM05D002462 ORTHO05D002893 4.6e-16 87.8 97 44.3
MBI04_g11449_MAGBIO Magnolia biondii HOM05D002462 ORTHO05D002893 4.6e-16 87.8 97 43.3
Nitab4.5_0003983g0040 Nicotiana tabacum HOM05D002462 ORTHO05D002893 4.6e-16 87.8 97 44.3
Nitab4.5_0008547g0020 Nicotiana tabacum HOM05D002462 ORTHO05D002893 4.6e-16 87.8 97 44.3
Os04g0538000 Oryza sativa ssp. japonica HOM05D002462 ORTHO05D002893 6.1e-16 87.4 97 44.3
Hund14611 Selenicereus undatus HOM05D002462 ORTHO05D002893 6.1e-16 87.4 97 44.3
Hma1.2p1_1868F.1_g306000 Hydrangea macrophylla HOM05D002462 ORTHO05D002893 7.9e-16 87.0 103 42.7
Lalb_Chr05g0214601 Lupinus albus HOM05D002462 ORTHO05D002893 7.9e-16 87.0 97 44.3
MD04G1081900 Malus domestica HOM05D002462 ORTHO05D002893 7.9e-16 87.0 97 45.4
Oeu024056.1 Olea europaea HOM05D002462 ORTHO05D002893 7.9e-16 87.0 97 44.3
Cc08_g13040 Coffea canephora HOM05D002462 ORTHO05D002893 1.0e-15 86.7 97 45.4
DCAR_006811 Daucus carota HOM05D002462 ORTHO05D002893 1.0e-15 86.7 97 44.3
PSO170G3800 Papaver somniferum HOM05D002462 ORTHO05D002893 1.0e-15 86.7 97 43.3
PSO782G4942 Papaver somniferum HOM05D002462 ORTHO05D002893 1.0e-15 86.7 97 43.3
SalBow6G5274 Salvia bowleyana HOM05D002462 ORTHO05D002893 1.0e-15 86.7 100 43.0
Aqoxy7G00706 Aquilegia oxysepala HOM05D002462 ORTHO05D002893 1.4e-15 86.3 97 41.2
CBR_g6631 Chara braunii HOM05D002462 ORTHO05D002893 1.4e-15 86.3 97 43.3
MELO3C013974.2 Cucumis melo HOM05D002462 ORTHO05D002893 3.0e-15 85.1 97 43.3
Zm00001eb186100 Zea mays HOM05D002462 ORTHO05D002893 3.0e-15 85.1 97 40.2
Glyma.17G137700 Glycine max HOM05D002462 ORTHO05D002893 3.9e-15 84.7 97 45.4
Sed0008444 Sechium edule HOM05D002462 ORTHO05D002893 3.9e-15 84.7 97 43.3
Zm00001eb248730 Zea mays HOM05D002462 ORTHO05D002893 3.9e-15 84.7 97 39.2
Sed0011066 Sechium edule HOM05D002462 ORTHO05D002893 5.1e-15 84.3 97 44.3
SEGI_18907 Sequoiadendron giganteum HOM05D002462 ORTHO05D002893 5.1e-15 84.3 97 42.3
Dinv39096 Davidia involucrata HOM05D002462 ORTHO05D002893 6.7e-15 84.0 97 42.3
vmacro14057 Vaccinium macrocarpon HOM05D002462 ORTHO05D002893 6.7e-15 84.0 97 43.3
Mapoly0083s0062 Marchantia polymorpha HOM05D002462 ORTHO05D002893 8.8e-15 83.6 97 41.2
Pp3c7_7770 Physcomitrium patens HOM05D002462 ORTHO05D002893 1.1e-14 83.2 100 41.0
Pp3c7_7774 Physcomitrium patens HOM05D002462 ORTHO05D002893 1.1e-14 83.2 100 41.0
Lj2g0017431 Lotus japonicus HOM05D002462 ORTHO05D002893 1.9e-14 82.4 97 46.4
Pp3c11_20290 Physcomitrium patens HOM05D002462 ORTHO05D002893 4.3e-14 81.3 100 40.0
Peaxi162Scf00002g00511 Petunia axillaris HOM05D002462 ORTHO05D002893 4.8e-13 77.8 97 39.2
SalBow6G4117 Salvia bowleyana HOM05D002462 ORTHO05D002893 1.8e-12 75.9 97 40.2
Psat2g178800 Pisum sativum HOM05D002462 ORTHO05D002893 3.1e-12 75.1 61 50.8
PRCOL_00006826 Prasinoderma coloniale HOM05D002462 ORTHO05D002893 5.3e-12 74.3 97 38.1
Zm00001eb075450 Zea mays HOM05D002462 ORTHO05D002893 1.2e-11 73.2 49 59.2
Actinidia25074 Actinidia chinensis HOM05D002462 ORTHO05D002893 5.9e-11 70.9 104 37.5
Sc01g0009300 Simmondsia chinensis HOM05D002462 ORTHO05D002893 7.7e-11 70.5 49 57.1
Actinidia22452 Actinidia chinensis HOM05D002462 ORTHO05D002893 1.7e-10 69.3 88 39.8
Cre03.g189950 Chlamydomonas reinhardtii HOM05D002462 ORTHO05D002893 8.5e-10 67.0 76 43.4
Zm00001eb375820 Zea mays HOM05D000163 ORTHO05D002893 1.1e-09 66.6 98 37.8
Hund07891 Selenicereus undatus HOM05D002462 ORTHO05D002893 2.5e-09 65.5 60 48.3
Zm00001eb257390 Zea mays HOM05D002462 ORTHO05D002893 7.2e-09 63.9 48 56.2
RcHm_v2.0_Chr4g0388861 Rosa chinensis HOM05D002462 ORTHO05D002893 9.4e-09 63.5 61 47.5
unitig_744.g24316 Utricularia gibba HOM05D002462 ORTHO05D002893 9.4e-09 63.5 79 40.5
PGR042G1642 Punica granatum HOM05D002462 ORTHO05D002893 1.6e-08 62.8 45 60.0
EL10Ac6g14500 Beta vulgaris HOM05D002462 ORTHO05D002893 2.1e-08 62.4 49 53.1
Os06g0163000 Oryza sativa ssp. japonica HOM05D000163 ORTHO05D002893 1.4e-07 59.7 98 34.7
Sp1g10890 Schrenkiella parvula HOM05D002462 ORTHO05D002893 1.4e-07 59.7 100 36.0
Aa31LG1G2450 Aethionema arabicum HOM05D002462 ORTHO05D002893 2.3e-07 58.9 107 34.6
PGR042G3651 Punica granatum HOM05D002462 ORTHO05D002893 3.0e-07 58.5 49 49.0
PGR042G0766 Punica granatum HOM05D002462 ORTHO05D002893 1.1e-06 56.6 49 46.9
EL10Ac6g14116 Beta vulgaris HOM05D002462 ORTHO05D002893 2.0e-06 55.8 41 61.0
Thhalv10007205m.g Eutrema salsugineum HOM05D002462 ORTHO05D002893 2.0e-06 55.8 97 36.1
FvH4_4g00020 Fragaria vesca HOM05D002462 ORTHO05D002893 5.7e-06 54.3 61 37.7
FAN12G2519 Fragaria x ananassa HOM05D002462 ORTHO05D002893 5.7e-06 54.3 61 37.7
FAN12G3816 Fragaria x ananassa HOM05D002297 ORTHO05D002385 5.7e-06 54.3 61 37.7
Carub.0001s1195 Capsella rubella HOM05D002462 ORTHO05D002893 9.7e-06 53.5 97 34.0
CARHR012580 Cardamine hirsuta HOM05D002462 ORTHO05D002893 9.7e-06 53.5 97 32.0


User provided reference genes

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