Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC4t26476H Brassica oleracea HOM05D003814 ORTHO05D004399 4.5e-216 754.2 357 100.0
C04p48950 Brassica napus HOM05D003814 ORTHO05D004399 5.7e-195 684.1 323 100.0
A04p14880 Brassica napus HOM05D003814 ORTHO05D004399 4.7e-165 584.7 367 79.0
BraA04t17126Z Brassica rapa HOM05D003814 ORTHO05D004399 4.7e-165 584.7 367 79.0
BcaB06g27653 Brassica carinata HOM05D003814 ORTHO05D004399 3.2e-153 545.4 327 81.7
Sp1g34730 Schrenkiella parvula HOM05D003814 ORTHO05D004399 4.8e-101 372.1 376 54.3
Thhalv10028265m.g Eutrema salsugineum HOM05D003814 ORTHO05D004399 3.0e-87 326.2 391 48.1
SpUn1086_0010 Schrenkiella parvula HOM05D003814 ORTHO05D004399 1.9e-81 307.0 225 67.1
CARHR272950 Cardamine hirsuta HOM05D003814 ORTHO05D004399 7.3e-81 305.1 373 47.7
Sp1g34780 Schrenkiella parvula HOM05D003814 ORTHO05D004399 4.7e-80 302.4 356 48.9
Carub.0007s3375 Capsella rubella HOM05D003814 ORTHO05D004399 1.3e-74 284.3 372 44.4
Carub.0007s3374 Capsella rubella HOM05D003814 ORTHO05D004399 1.3e-58 231.1 377 38.7
Thhalv10029417m.g Eutrema salsugineum HOM05D003814 ORTHO05D004399 2.8e-56 223.4 358 41.3
Sp1g34880 Schrenkiella parvula HOM05D003814 ORTHO05D004399 1.4e-55 221.1 374 38.2
A09p14840 Brassica napus HOM05D003814 ORTHO05D004399 6.8e-55 218.8 376 37.5
BraA09t37130Z Brassica rapa HOM05D003814 ORTHO05D004399 2.6e-54 216.9 379 36.1
BcaC04g22552 Brassica carinata HOM05D003814 ORTHO05D004399 4.9e-53 212.6 362 37.0
C09p17970 Brassica napus HOM05D003814 ORTHO05D004399 4.9e-53 212.6 362 37.0
BolC9t54693H Brassica oleracea HOM05D003814 ORTHO05D004399 4.9e-53 212.6 362 37.0
BcaB07g31449 Brassica carinata HOM05D003814 ORTHO05D004399 4.1e-52 209.5 376 36.4
AL2G10680 Arabidopsis lyrata HOM05D003814 ORTHO05D004399 1.7e-50 204.1 363 34.7
Thhalv10028201m.g Eutrema salsugineum HOM05D003814 ORTHO05D004399 3.9e-50 203.0 324 41.0
Carub.0002s0053 Capsella rubella HOM05D003814 ORTHO05D004399 3.4e-46 189.9 354 35.3
CARHR290110 Cardamine hirsuta HOM05D003814 ORTHO05D004399 3.4e-46 189.9 378 33.3
Carub.0007s3376 Capsella rubella HOM05D003814 ORTHO05D004399 4.9e-45 186.0 371 34.2
AT1G64290 Arabidopsis thaliana HOM05D003814 ORTHO05D004399 7.1e-44 182.2 377 34.7
Sp7g03960 Schrenkiella parvula HOM05D003814 ORTHO05D004399 1.6e-43 181.0 367 33.8
AL2G10650 Arabidopsis lyrata HOM05D003814 ORTHO05D004399 2.1e-43 180.6 375 32.5
Aa31LG2G1300 Aethionema arabicum HOM05D003814 ORTHO05D004399 2.3e-42 177.2 366 33.1
Carub.0002s0052 Capsella rubella HOM05D003814 ORTHO05D004399 1.9e-41 174.1 368 32.9
AT1G64295 Arabidopsis thaliana HOM05D003814 ORTHO05D004399 2.5e-41 173.7 369 32.0
Thhalv10023822m.g Eutrema salsugineum HOM05D003814 ORTHO05D004399 1.5e-38 164.5 363 33.1
CARHR050300 Cardamine hirsuta HOM05D003814 ORTHO05D004399 2.0e-38 164.1 362 32.0
BcaB07g31514 Brassica carinata HOM05D003814 ORTHO05D004399 3.4e-38 163.3 370 33.8
A02p10510 Brassica napus HOM05D003814 ORTHO05D004399 1.1e-36 158.3 379 30.9
BcaC04g22634 Brassica carinata HOM05D003814 ORTHO05D004399 8.7e-34 148.7 364 32.4
BraA09t37073Z Brassica rapa HOM05D003814 ORTHO05D004399 9.6e-33 145.2 315 34.6
Thecc.09G080800 Theobroma cacao HOM05D003814 ORTHO05D004399 2.0e-30 137.5 373 27.1
C02p17570 Brassica napus HOM05D003814 ORTHO05D004399 7.6e-30 135.6 362 31.2
Potri.008G038000 Populus trichocarpa HOM05D003814 ORTHO05D004399 1.7e-29 134.4 354 29.7
Potri.010G224400 Populus trichocarpa HOM05D003814 ORTHO05D004399 1.9e-28 131.0 390 28.5
TWI53G0525 Tripterygium wilfordii HOM05D003814 ORTHO05D004399 1.1e-25 121.7 327 25.1
Duzib187G0024 Durio zibethinus HOM05D003814 ORTHO05D004399 5.6e-25 119.4 365 28.8
Nitab4.5_0000073g0260 Nicotiana tabacum HOM05D003814 ORTHO05D004399 2.1e-24 117.5 188 35.6
RcHm_v2.0_Chr2g0094241 Rosa chinensis HOM05D003814 ORTHO05D004399 2.8e-24 117.1 317 26.5
Manes.04G143500 Manihot esculenta HOM05D003814 ORTHO05D004399 1.1e-23 115.2 362 26.0
Haze_11118 Corylus avellana HOM05D003814 ORTHO05D004399 1.8e-23 114.4 333 27.3
Migut.E01447 Erythranthe guttata HOM05D003814 ORTHO05D004399 3.1e-23 113.6 226 32.7
Duzib168G0557 Durio zibethinus HOM05D003814 ORTHO05D004399 5.3e-23 112.8 344 25.3
Ciclev10007128m.g Citrus clementina HOM05D003814 ORTHO05D004399 2.0e-22 110.9 303 24.8
Cc08_g07160 Coffea canephora HOM05D003814 ORTHO05D004399 7.6e-22 109.0 187 33.2
Haze_08071 Corylus avellana HOM05D003814 ORTHO05D004399 1.0e-21 108.6 294 26.5
Haze_27585 Corylus avellana HOM05D003814 ORTHO05D004399 1.0e-21 108.6 186 35.5
Potri.008G214000 Populus trichocarpa HOM05D003814 ORTHO05D004399 2.9e-21 107.1 313 27.5
FvH4_1g08170 Fragaria vesca HOM05D003814 ORTHO05D004399 4.9e-21 106.3 359 25.6
FAN19G0873 Fragaria x ananassa HOM05D003814 ORTHO05D004399 4.9e-21 106.3 359 25.6
FvH4_1g08161 Fragaria vesca HOM05D003814 ORTHO05D004399 6.5e-21 105.9 173 35.8
FAN19G3124 Fragaria x ananassa HOM05D003814 ORTHO05D004399 3.2e-20 103.6 173 35.3
Migut.E01439 Erythranthe guttata HOM05D003814 ORTHO05D004399 7.1e-20 102.4 252 29.4
Haze_11116 Corylus avellana HOM05D003054 ORTHO05D003376 9.3e-20 102.1 172 36.0
FAN26G3410 Fragaria x ananassa HOM05D003814 ORTHO05D004399 9.3e-20 102.1 222 31.5
FAN26G2103 Fragaria x ananassa HOM05D003814 ORTHO05D004399 2.7e-19 100.5 222 31.1
CiPaw.01G298600 Carya illinoinensis HOM05D003814 ORTHO05D004399 4.6e-19 99.8 371 24.5
Potri.007G037500 Populus trichocarpa HOM05D003814 ORTHO05D004399 1.0e-18 98.6 311 25.7
FAN23G2856 Fragaria x ananassa HOM05D003814 ORTHO05D004399 1.8e-18 97.8 221 30.3
Sabra10G0173600 Salix brachista HOM05D001546 ORTHO05D004399 1.8e-18 97.8 218 30.3
Potri.014G187100 Populus trichocarpa HOM05D003814 ORTHO05D004399 2.3e-18 97.4 309 27.5
Potri.017G066400 Populus trichocarpa HOM05D003814 ORTHO05D004399 2.3e-18 97.4 238 29.0
Dinv25578 Davidia involucrata HOM05D003814 ORTHO05D004399 5.1e-18 96.3 359 24.5
Sabra16G0039400 Salix brachista HOM05D003814 ORTHO05D004399 5.1e-18 96.3 171 33.9
Cfa001318 Carpinus fangiana HOM05D003814 ORTHO05D004399 8.7e-18 95.5 331 26.3
PGSC0003DMG400037022 Solanum tuberosum HOM05D003814 ORTHO05D004399 3.3e-17 93.6 174 31.6
TAR636G0432 Trochodendron aralioides HOM05D003814 ORTHO05D004399 2.2e-16 90.9 361 23.8
Thecc.06G118300 Theobroma cacao HOM05D003814 ORTHO05D004399 3.7e-16 90.1 215 29.8
AL7G47620 Arabidopsis lyrata HOM05D003814 ORTHO05D004399 4.8e-16 89.7 90 54.4
QL03p008482 Quercus lobata HOM05D003814 ORTHO05D004399 4.8e-16 89.7 172 34.3
TAR624G1176 Trochodendron aralioides HOM05D003814 ORTHO05D004399 1.4e-15 88.2 179 29.6
COL.COLO4_18129 Corchorus olitorius HOM05D003814 ORTHO05D004399 1.8e-15 87.8 324 25.3
Prupe.7G202800 Prunus persica HOM05D003814 ORTHO05D004399 1.8e-15 87.8 204 29.4
AT5G41720 Arabidopsis thaliana HOM05D003814 ORTHO05D004399 2.4e-15 87.4 88 54.5
PGR004G0767 Punica granatum HOM05D003814 ORTHO05D004399 3.1e-15 87.0 354 23.4
Hma1.2p1_0169F.1_g074710 Hydrangea macrophylla HOM05D003814 ORTHO05D004399 4.1e-15 86.7 359 22.0
Potri.006G167500 Populus trichocarpa HOM05D003814 ORTHO05D004399 4.1e-15 86.7 293 26.3
HanXRQChr04g0110661 Helianthus annuus HOM05D003814 ORTHO05D004399 6.9e-15 85.9 214 29.4
MD15G1214200 Malus domestica HOM05D003814 ORTHO05D004399 1.2e-14 85.1 230 27.8
Potri.001G462650 Populus trichocarpa HOM05D003814 ORTHO05D004399 1.5e-14 84.7 152 36.2
QL05p073999 Quercus lobata HOM05D003814 ORTHO05D004399 1.5e-14 84.7 363 23.1
Peaxi162Scf00928g00024 Petunia axillaris HOM05D003814 ORTHO05D004399 2.0e-14 84.3 343 23.6
TAR624G1373 Trochodendron aralioides HOM05D003814 ORTHO05D004399 3.4e-14 83.6 356 21.9
ClCG10G017770 Citrullus lanatus HOM05D003814 ORTHO05D004399 7.6e-14 82.4 216 28.2
MD02G1086300 Malus domestica HOM05D003814 ORTHO05D004399 7.6e-14 82.4 229 27.9
Prupe.7G202900 Prunus persica HOM05D003814 ORTHO05D004399 7.6e-14 82.4 183 33.3
TAR636G1700 Trochodendron aralioides HOM05D003814 ORTHO05D004399 7.6e-14 82.4 188 30.9
FAN28G0169 Fragaria x ananassa HOM05D003814 ORTHO05D004399 1.0e-13 82.0 132 36.4
TAR178G0001 Trochodendron aralioides HOM05D003814 ORTHO05D004399 1.3e-13 81.6 356 21.6
A09p14250 Brassica napus HOM05D002195 ORTHO05D002898 1.7e-13 81.3 306 27.8
COL.COLO4_18131 Corchorus olitorius HOM05D003814 ORTHO05D004399 2.2e-13 80.9 201 28.4
MELO3C009576.2 Cucumis melo HOM05D003814 ORTHO05D004399 2.2e-13 80.9 179 29.6
AT2G05360 Arabidopsis thaliana HOM05D003814 ORTHO05D004399 3.8e-13 80.1 272 25.0
C09p17160 Brassica napus HOM05D002195 ORTHO05D002898 6.5e-13 79.3 293 27.3
BolC9t54614H Brassica oleracea HOM05D002195 ORTHO05D002898 6.5e-13 79.3 293 27.3
HanXRQChr11g0341161 Helianthus annuus HOM05D003814 ORTHO05D004399 3.2e-12 77.0 354 22.0
Lsat_1_v5_gn_6_92600 Lactuca sativa HOM05D003814 ORTHO05D004399 7.2e-12 75.9 360 22.2
Sed0024854 Sechium edule HOM05D003814 ORTHO05D004399 1.2e-11 75.1 152 28.9
SHI03045 Sapria himalayana HOM05D003814 ORTHO05D004399 2.1e-11 74.3 185 31.4
SHI03051 Sapria himalayana HOM05D003814 ORTHO05D004399 2.1e-11 74.3 185 31.4
SGA_v2.0_scaffold4G02155 Striga asiatica HOM05D003814 ORTHO05D004399 4.6e-11 73.2 184 26.6
HanXRQChr04g0126041 Helianthus annuus HOM05D003814 ORTHO05D004399 1.3e-10 71.6 133 28.6
TAR626G0622 Trochodendron aralioides HOM05D003814 ORTHO05D004399 1.3e-10 71.6 324 23.8
CsaV3_3G038340 Cucumis sativus L. HOM05D003814 ORTHO05D004399 3.0e-10 70.5 135 32.6
Aqoxy5G02065 Aquilegia oxysepala HOM05D003814 ORTHO05D004399 3.9e-10 70.1 181 28.2
TAR624G0077 Trochodendron aralioides HOM05D003814 ORTHO05D004399 3.9e-10 70.1 155 27.1
Nitab4.5_0000343g0080 Nicotiana tabacum HOM05D003814 ORTHO05D004399 6.7e-10 69.3 206 24.8
ClCG10G017950 Citrullus lanatus HOM05D003814 ORTHO05D004399 8.8e-10 68.9 149 28.2
Lsat_1_v5_gn_8_86340 Lactuca sativa HOM05D003814 ORTHO05D004399 8.8e-10 68.9 155 29.7
PSO478G3480 Papaver somniferum HOM05D003814 ORTHO05D004399 1.1e-09 68.6 130 34.6
TAR374G0716 Trochodendron aralioides HOM05D003814 ORTHO05D004399 1.1e-09 68.6 210 26.7
PGR004G1882 Punica granatum HOM05D003814 ORTHO05D004399 4.3e-09 66.6 257 24.9
Gohir.D07G013832 Gossypium hirsutum HOM05D003814 ORTHO05D004399 7.4e-09 65.9 243 23.5
Gorai.003G018500 Gossypium raimondii HOM05D003814 ORTHO05D004399 7.4e-09 65.9 205 29.8
FAN26G2210 Fragaria x ananassa HOM05D003814 ORTHO05D004399 9.7e-09 65.5 177 28.2
FAN26G3081 Fragaria x ananassa HOM05D003814 ORTHO05D004399 9.7e-09 65.5 177 28.2
PGSC0003DMG400041501 Solanum tuberosum HOM05D003814 ORTHO05D004399 9.7e-09 65.5 205 26.8
unitig_22.g5424 Utricularia gibba HOM05D003814 ORTHO05D004399 9.7e-09 65.5 220 30.5
PSO170G6690 Papaver somniferum HOM05D003814 ORTHO05D004399 1.3e-08 65.1 204 28.9
HanXRQChr04g0107941 Helianthus annuus HOM05D003814 ORTHO05D004399 1.7e-08 64.7 147 33.3
PSO832G3562 Papaver somniferum HOM05D003814 ORTHO05D004399 2.2e-08 64.3 208 24.0
ECA236G4104 Erigeron canadensis HOM05D003814 ORTHO05D004399 2.8e-08 63.9 143 31.5
Gohir.A07G014200 Gossypium hirsutum HOM05D003814 ORTHO05D004399 2.8e-08 63.9 194 26.3
Gorai.001G014600 Gossypium raimondii HOM05D003814 ORTHO05D004399 3.7e-08 63.5 243 23.0
PSO210G1123 Papaver somniferum HOM05D003814 ORTHO05D004399 6.3e-08 62.8 191 25.7
unitig_22.g5418 Utricularia gibba HOM05D003814 ORTHO05D004399 8.2e-08 62.4 183 31.7
PSO782G3287 Papaver somniferum HOM05D003814 ORTHO05D004399 1.4e-07 61.6 149 30.2
Gohir.A07G014250 Gossypium hirsutum HOM05D003814 ORTHO05D004399 1.8e-07 61.2 198 25.8
PGSC0003DMG400035508 Solanum tuberosum HOM05D003814 ORTHO05D004399 1.8e-07 61.2 78 38.5
ECA246G3486 Erigeron canadensis HOM05D003814 ORTHO05D004399 2.4e-07 60.8 220 23.6
Peaxi162Scf00047g10141 Petunia axillaris HOM05D003814 ORTHO05D004399 2.0e-06 57.8 190 24.2
unitig_0.g2579 Utricularia gibba HOM05D007162 ORTHO05D007631 3.4e-06 57.0 119 26.9


User provided reference genes

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