Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC4t26374H Brassica oleracea HOM05D003412 ORTHO05D003962 4.1e-41 171.0 90 100.0
BcaC09g50034 Brassica carinata HOM05D003412 ORTHO05D003962 5.4e-33 144.1 81 92.6
BolC4t26373H Brassica oleracea HOM05D003412 ORTHO05D003962 1.2e-27 126.3 75 93.3
BcaNung03912 Brassica carinata HOM05D003412 ORTHO05D003962 2.7e-24 115.2 72 86.1
A06p37010 Brassica napus HOM05D003412 ORTHO05D003962 2.7e-24 115.2 72 86.1
BraA06t26626Z Brassica rapa HOM05D003412 ORTHO05D003962 2.7e-24 115.2 72 86.1
BcaNung03675 Brassica carinata HOM05D003412 ORTHO05D003962 4.6e-24 114.4 72 84.7
C07p41480 Brassica napus HOM05D003412 ORTHO05D003962 4.6e-24 114.4 72 84.7
BolC7t44681H Brassica oleracea HOM05D003412 ORTHO05D003962 4.6e-24 114.4 72 84.7
AL6G38640 Arabidopsis lyrata HOM05D003412 ORTHO05D003962 5.2e-20 100.9 72 76.4
Thhalv10004552m.g Eutrema salsugineum HOM05D003412 ORTHO05D003962 5.2e-20 100.9 72 77.8
AT5G26770 Arabidopsis thaliana HOM05D003412 ORTHO05D003962 8.9e-20 100.1 72 76.4
THA.LOC104821745 Tarenaya hassleriana HOM05D003412 ORTHO05D003962 3.4e-19 98.2 72 73.6
Carub.0006s2442 Capsella rubella HOM05D003412 ORTHO05D003962 9.9e-19 96.7 72 73.6
BcaB04g19713 Brassica carinata HOM05D003412 ORTHO05D003962 1.7e-18 95.9 72 73.6
CARHR186800 Cardamine hirsuta HOM05D003412 ORTHO05D003962 2.2e-18 95.5 72 73.6
Sp2g21210 Schrenkiella parvula HOM05D003412 ORTHO05D003962 2.9e-18 95.1 68 77.9
A09p05660 Brassica napus HOM05D003412 ORTHO05D003962 8.4e-18 93.6 72 73.6
BraA09t36208Z Brassica rapa HOM05D003412 ORTHO05D003962 1.4e-17 92.8 71 73.2
AT3G05830 Arabidopsis thaliana HOM05D003412 ORTHO05D003962 2.4e-17 92.0 72 66.7
THA.LOC104818749 Tarenaya hassleriana HOM05D003412 ORTHO05D003962 3.2e-17 91.7 72 70.8
Aa31LG11G9870 Aethionema arabicum HOM05D003412 ORTHO05D003962 5.4e-17 90.9 72 68.1
Carub.0003s0519 Capsella rubella HOM05D003412 ORTHO05D003962 5.4e-17 90.9 72 65.3
Sp3g04690 Schrenkiella parvula HOM05D003412 ORTHO05D003962 5.4e-17 90.9 72 66.7
AL3G16570 Arabidopsis lyrata HOM05D003412 ORTHO05D003962 9.2e-17 90.1 72 65.3
Aa31LG5G16210 Aethionema arabicum HOM05D003412 ORTHO05D003962 1.2e-16 89.7 72 66.7
Thhalv10021934m.g Eutrema salsugineum HOM05D003412 ORTHO05D003962 1.2e-16 89.7 72 65.3
BcaC05g29778 Brassica carinata HOM05D003412 ORTHO05D003962 6.0e-16 87.4 72 65.3
CARHR080290 Cardamine hirsuta HOM05D003412 ORTHO05D003962 1.3e-15 86.3 72 63.9
BcaC04g23636 Brassica carinata HOM05D003412 ORTHO05D003962 1.7e-15 85.9 61 73.8
BcaC05g30086 Brassica carinata HOM05D003412 ORTHO05D003962 5.1e-15 84.3 72 62.5
C05p61450 Brassica napus HOM05D003412 ORTHO05D003962 5.1e-15 84.3 72 62.5
BolC5t34803H Brassica oleracea HOM05D003412 ORTHO05D003962 5.1e-15 84.3 72 62.5
Ciclev10012076m.g Citrus clementina HOM05D003412 ORTHO05D003962 1.5e-14 82.8 72 62.5
Manes.08G107900 Manihot esculenta HOM05D003412 ORTHO05D003962 1.5e-14 82.8 72 62.5
Actinidia01664 Actinidia chinensis HOM05D003412 ORTHO05D003962 3.3e-14 81.6 72 61.1
Hma1.2p1_3304F.1_g335080 Hydrangea macrophylla HOM05D003412 ORTHO05D003962 4.3e-14 81.3 72 61.1
A05p42230 Brassica napus HOM05D003412 ORTHO05D003962 7.3e-14 80.5 70 61.4
BraA05t22941Z Brassica rapa HOM05D003412 ORTHO05D003962 7.3e-14 80.5 70 61.4
CANSAT54G2189 Cannabis sativa HOM05D003412 ORTHO05D003962 1.2e-13 79.7 71 57.7
Hma1.2p1_0052F.1_g030415 Hydrangea macrophylla HOM05D003412 ORTHO05D003962 1.2e-13 79.7 80 52.5
QL03p010471 Quercus lobata HOM05D003412 ORTHO05D003962 1.6e-13 79.3 72 59.7
BcaB05g23757 Brassica carinata HOM05D000589 ORTHO05D001885 2.1e-13 79.0 60 75.0
CiPaw.07G035400 Carya illinoinensis HOM05D003412 ORTHO05D003962 2.1e-13 79.0 72 58.3
RcHm_v2.0_Chr3g0458381 Rosa chinensis HOM05D003412 ORTHO05D003962 2.8e-13 78.6 73 60.3
Thecc.05G329000 Theobroma cacao HOM05D003412 ORTHO05D003962 2.8e-13 78.6 73 58.9
Dinv24506 Davidia involucrata HOM05D003412 ORTHO05D003962 3.6e-13 78.2 70 60.0
Gohir.D13G116700 Gossypium hirsutum HOM05D003412 ORTHO05D003962 4.7e-13 77.8 72 59.7
Gorai.013G131200 Gossypium raimondii HOM05D003412 ORTHO05D003962 4.7e-13 77.8 72 59.7
Manes.09G180600 Manihot esculenta HOM05D003412 ORTHO05D003962 4.7e-13 77.8 72 58.3
DCAR_029287 Daucus carota HOM05D003412 ORTHO05D003962 1.4e-12 76.3 70 54.3
MD04G1187100 Malus domestica HOM05D003412 ORTHO05D003962 2.4e-12 75.5 73 57.5
Rhsim05G0121800 Rhododendron simsii HOM05D003412 ORTHO05D003962 2.4e-12 75.5 72 56.9
arahy.Tifrunner.gnm1.ann1.LCTE14 Arachis hypogaea HOM05D003412 ORTHO05D003962 3.1e-12 75.1 72 58.3
COL.COLO4_05512 Corchorus olitorius HOM05D003412 ORTHO05D003962 3.1e-12 75.1 72 56.9
Duzib177G0752 Durio zibethinus HOM05D003412 ORTHO05D003962 3.1e-12 75.1 72 56.9
Migut.N00969 Erythranthe guttata HOM05D003412 ORTHO05D003962 3.1e-12 75.1 74 58.1
Prupe.6G305600 Prunus persica HOM05D003412 ORTHO05D003962 3.1e-12 75.1 72 58.3
FAN05G5683 Fragaria x ananassa HOM05D003412 ORTHO05D003962 4.0e-12 74.7 75 60.0
FAN09G0161 Fragaria x ananassa HOM05D003412 ORTHO05D003962 4.0e-12 74.7 75 60.0
FAN14G3569 Fragaria x ananassa HOM05D003412 ORTHO05D003962 4.0e-12 74.7 75 60.0
Oeu036644.1 Olea europaea HOM05D003412 ORTHO05D003962 4.0e-12 74.7 68 58.8
arahy.Tifrunner.gnm1.ann1.WSUD3I Arachis hypogaea HOM05D003412 ORTHO05D003962 6.9e-12 73.9 72 56.9
Lalb_Chr06g0167331 Lupinus albus HOM05D003412 ORTHO05D003962 6.9e-12 73.9 72 55.6
Lalb_Chr21g0310081 Lupinus albus HOM05D003412 ORTHO05D003962 6.9e-12 73.9 72 55.6
PGR083G2508 Punica granatum HOM05D003412 ORTHO05D003962 9.0e-12 73.6 72 56.9
QL03p010236 Quercus lobata HOM05D003412 ORTHO05D003962 9.0e-12 73.6 76 56.6
Dinv30941 Davidia involucrata HOM05D003412 ORTHO05D003962 1.2e-11 73.2 68 57.4
Actinidia16911 Actinidia chinensis HOM05D003412 ORTHO05D003962 1.5e-11 72.8 72 52.8
Eucgr.H01317 Eucalyptus grandis HOM05D003412 ORTHO05D003962 1.5e-11 72.8 70 55.7
PGR031G1608 Punica granatum HOM05D003412 ORTHO05D003962 1.5e-11 72.8 70 57.1
Sc16g0009380 Simmondsia chinensis HOM05D003412 ORTHO05D003962 1.5e-11 72.8 71 54.9
MSTRG.16423 Avicennia marina HOM05D003412 ORTHO05D003962 2.6e-11 72.0 68 57.4
Lsat_1_v5_gn_9_77100 Lactuca sativa HOM05D003412 ORTHO05D003962 2.6e-11 72.0 70 55.7
CSS0037128 Camellia sinensis var. sinensis HOM05D003412 ORTHO05D003962 3.4e-11 71.6 72 55.6
Glyma.20G092900 Glycine max HOM05D003412 ORTHO05D003962 3.4e-11 71.6 72 52.8
MSTRG.5167 Avicennia marina HOM05D003412 ORTHO05D003962 4.4e-11 71.2 66 57.6
Cpa.g.sc48.220 Carica papaya HOM05D003412 ORTHO05D003962 4.4e-11 71.2 72 54.2
MSTRG.27914 Avicennia marina HOM05D003412 ORTHO05D003962 7.6e-11 70.5 67 55.2
Glyma.10G144000 Glycine max HOM05D003412 ORTHO05D003962 7.6e-11 70.5 72 52.8
TWI56G0029 Tripterygium wilfordii HOM05D003412 ORTHO05D003962 7.6e-11 70.5 72 52.8
Nitab4.5_0014791g0020 Nicotiana tabacum HOM05D003412 ORTHO05D003962 9.9e-11 70.1 79 50.6
Duzib128G1566 Durio zibethinus HOM05D003412 ORTHO05D003962 1.3e-10 69.7 70 52.9
Lj5g0005042 Lotus japonicus HOM05D003412 ORTHO05D003962 1.3e-10 69.7 72 51.4
PGR119G1398 Punica granatum HOM05D003412 ORTHO05D003962 1.3e-10 69.7 73 54.8
TPR.G2623 Trifolium pratense HOM05D003412 ORTHO05D003962 1.3e-10 69.7 70 54.3
VMungo0720G0630 Vigna mungo HOM05D003412 ORTHO05D003962 1.3e-10 69.7 72 52.8
Medtr1g484830 Medicago truncatula HOM05D003412 ORTHO05D003962 1.7e-10 69.3 70 54.3
CiPaw.08G150800 Carya illinoinensis HOM05D003412 ORTHO05D003962 2.2e-10 68.9 70 54.3
SalBow1G0001 Salvia bowleyana HOM05D003412 ORTHO05D003962 2.2e-10 68.9 68 57.4
Aqoxy2G02528 Aquilegia oxysepala HOM05D003412 ORTHO05D003962 2.9e-10 68.6 72 52.8
Zm00001eb417390 Zea mays HOM05D003412 ORTHO05D003962 2.9e-10 68.6 72 52.8
Ah.06g190650 Amaranthus hybridus HOM05D003412 ORTHO05D003962 3.8e-10 68.2 72 51.4
Ca_10195_v3 Cicer arietinum L. HOM05D003412 ORTHO05D003962 3.8e-10 68.2 72 52.8
Nitab4.5_0001931g0010 Nicotiana tabacum HOM05D003412 ORTHO05D003962 3.8e-10 68.2 72 52.8
Solyc01g101130.3 Solanum lycopersicum HOM05D003412 ORTHO05D003962 3.8e-10 68.2 71 53.5
Zm00001eb354610 Zea mays HOM05D003412 ORTHO05D003962 3.8e-10 68.2 72 51.4
arahy.Tifrunner.gnm1.ann1.US2PL9 Arachis hypogaea HOM05D003412 ORTHO05D003962 6.4e-10 67.4 58 58.6
Nn4g25397 Nelumbo nucifera HOM05D003412 ORTHO05D003962 6.4e-10 67.4 72 51.4
Potri.005G003600 Populus trichocarpa HOM05D003412 ORTHO05D003962 6.4e-10 67.4 73 53.4
vmacro01603 Vaccinium macrocarpon HOM05D003412 ORTHO05D003962 6.4e-10 67.4 76 52.6
MELO3C004154.2 Cucumis melo HOM05D003412 ORTHO05D003962 8.4e-10 67.0 72 51.4
ECA236G3082 Erigeron canadensis HOM05D003412 ORTHO05D003962 8.4e-10 67.0 78 50.0
Haze_03996 Corylus avellana HOM05D003412 ORTHO05D003962 1.1e-09 66.6 79 51.9
DCAR_025305 Daucus carota HOM05D003412 ORTHO05D003962 1.4e-09 66.2 72 48.6
Os05g0135900 Oryza sativa ssp. japonica HOM05D003412 ORTHO05D003962 1.4e-09 66.2 65 56.9
Potri.013G003400 Populus trichocarpa HOM05D003412 ORTHO05D003962 1.4e-09 66.2 72 48.6
Sopen01g044580 Solanum pennellii HOM05D003412 ORTHO05D003962 1.4e-09 66.2 65 55.4
PGSC0003DMG400018247 Solanum tuberosum HOM05D003412 ORTHO05D003962 1.4e-09 66.2 65 55.4
TAR362G0077 Trochodendron aralioides HOM05D003412 ORTHO05D003962 1.4e-09 66.2 72 52.8
Sabra13G0002900 Salix brachista HOM05D003412 ORTHO05D003962 1.9e-09 65.9 73 50.7
MBI19_g32732_MAGBIO Magnolia biondii HOM05D003412 ORTHO05D003962 2.4e-09 65.5 78 46.2
Sabra05G0000900 Salix brachista HOM05D003412 ORTHO05D003962 2.4e-09 65.5 72 50.0
vmacro19768 Vaccinium macrocarpon HOM05D003412 ORTHO05D003962 2.4e-09 65.5 90 46.7
Eucgr.B01817 Eucalyptus grandis HOM05D003412 ORTHO05D003962 3.2e-09 65.1 72 47.2
MD12G1200500 Malus domestica HOM05D003412 ORTHO05D003962 4.2e-09 64.7 73 53.4
arahy.Tifrunner.gnm1.ann1.7ZMX5M Arachis hypogaea HOM05D003412 ORTHO05D003962 5.4e-09 64.3 58 58.6
ClCG02G014670 Citrullus lanatus HOM05D003412 ORTHO05D003962 5.4e-09 64.3 72 50.0
Psat6g155400 Pisum sativum HOM05D003412 ORTHO05D003962 5.4e-09 64.3 70 50.0
arahy.Tifrunner.gnm1.ann1.36CNLM Arachis hypogaea HOM05D003412 ORTHO05D003962 1.2e-08 63.2 77 50.6
arahy.Tifrunner.gnm1.ann1.D23GS1 Arachis hypogaea HOM05D003412 ORTHO05D003962 1.2e-08 63.2 77 50.6
GSVIVG01031318001 Vitis vinifera HOM05D003412 ORTHO05D003962 1.2e-08 63.2 72 50.0
TAR636G2549 Trochodendron aralioides HOM05D003412 ORTHO05D003962 1.6e-08 62.8 76 47.4
C09p06270 Brassica napus HOM05D003412 ORTHO05D003962 3.5e-08 61.6 72 56.9
Migut.B00877 Erythranthe guttata HOM05D003412 ORTHO05D003962 3.5e-08 61.6 58 55.2
Nn3g21904 Nelumbo nucifera HOM05D003412 ORTHO05D003962 3.5e-08 61.6 72 47.2
PSO210G2054 Papaver somniferum HOM05D003412 ORTHO05D003962 6.0e-08 60.8 72 47.2
PSO357G0133 Papaver somniferum HOM05D003412 ORTHO05D003962 6.0e-08 60.8 72 48.6
HPP92_026058 Vanilla planifolia HOM05D003412 ORTHO05D003962 1.0e-07 60.1 72 47.2
CDE02G2375 Ceratophyllum demersum HOM05D000427 ORTHO05D000386 1.7e-07 59.3 66 50.0
AUR62006809 Chenopodium quinoa HOM05D003412 ORTHO05D003962 1.7e-07 59.3 82 43.9
PSO761G0645 Papaver somniferum HOM05D003412 ORTHO05D003962 1.7e-07 59.3 72 45.8
THA.LOC104816843 Tarenaya hassleriana HOM05D003412 ORTHO05D003962 2.3e-07 58.9 79 46.8
GSVIVG01028212001 Vitis vinifera HOM05D003412 ORTHO05D003962 2.3e-07 58.9 72 45.8
Sed0023403 Sechium edule HOM05D003412 ORTHO05D003962 3.0e-07 58.5 72 48.6
Rhsim11G0101900 Rhododendron simsii HOM05D003412 ORTHO05D003962 5.1e-07 57.8 83 43.4
Sabra05G0015000 Salix brachista HOM05D003412 ORTHO05D003962 6.6e-07 57.4 84 42.9
unitig_26.g8997 Utricularia gibba HOM05D003412 ORTHO05D003962 8.7e-07 57.0 68 45.6
ATR0796G311 Amborella trichopoda HOM05D003412 ORTHO05D003962 1.5e-06 56.2 59 50.8
Oeu029183.1 Olea europaea HOM05D003412 ORTHO05D003962 2.5e-06 55.5 68 48.5
BcaB01g00664 Brassica carinata HOM05D003412 ORTHO05D014430 3.3e-06 55.1 34 85.3
TAR365G0256 Trochodendron aralioides HOM05D003412 ORTHO05D003962 4.3e-06 54.7 82 40.2
TAR365G0905 Trochodendron aralioides HOM05D003412 ORTHO05D003962 5.6e-06 54.3 82 40.2
CsaV3_2G007300 Cucumis sativus L. HOM05D003412 ORTHO05D003962 7.3e-06 53.9 90 41.1


User provided reference genes

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