Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC4t26352H Brassica oleracea HOM05D004407 ORTHO05D005074 4.5e-107 391.3 208 100.0
A04p13730 Brassica napus HOM05D004407 ORTHO05D005074 1.3e-93 346.7 226 84.5
BraA04t17032Z Brassica rapa HOM05D004407 ORTHO05D005074 3.7e-93 345.1 227 81.1
C04p47510 Brassica napus HOM05D004407 ORTHO05D005074 4.5e-91 338.2 230 83.0
CARHR213820 Cardamine hirsuta HOM05D004407 ORTHO05D005074 1.1e-86 323.6 214 82.2
Thhalv10028148m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 4.8e-85 318.2 215 81.4
Carub.0007s3479 Capsella rubella HOM05D004407 ORTHO05D005074 1.0e-82 310.5 216 83.8
AT5G40690 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 1.0e-71 273.9 213 76.5
AL7G49050 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 1.4e-68 263.5 217 73.3
Sp7g01180 Schrenkiella parvula HOM05D004407 ORTHO05D005074 1.9e-65 253.1 129 92.2
Thhalv10028030m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 5.0e-58 228.4 213 63.4
BcaB02g07933 Brassica carinata HOM05D004407 ORTHO05D005074 5.6e-57 224.9 203 58.6
THA.LOC104825308 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 5.4e-52 208.4 213 59.2
Aa31LG2G5400 Aethionema arabicum HOM05D004407 ORTHO05D005074 1.6e-51 206.8 205 56.6
THA.LOC104805351 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 5.0e-50 201.8 211 62.6
Aa31LG9G940 Aethionema arabicum HOM05D004407 ORTHO05D005074 8.6e-50 201.1 216 56.5
TWI36G1179 Tripterygium wilfordii HOM05D004407 ORTHO05D005074 1.9e-44 183.3 209 49.3
Nitab4.5_0001031g0160 Nicotiana tabacum HOM05D004407 ORTHO05D005074 4.1e-44 182.2 227 48.5
CiPaw.03G049400 Carya illinoinensis HOM05D004407 ORTHO05D005074 7.0e-44 181.4 207 50.2
Haze_14799 Corylus avellana HOM05D002760 ORTHO05D003169 1.6e-43 180.3 212 50.0
QL02p073303 Quercus lobata HOM05D004407 ORTHO05D005074 1.6e-43 180.3 224 47.8
QL02p073308 Quercus lobata HOM05D004407 ORTHO05D005074 1.6e-43 180.3 224 47.8
CANSAT64G2558 Cannabis sativa HOM05D004407 ORTHO05D005074 2.7e-43 179.5 225 51.1
PGR083G0262 Punica granatum HOM05D004407 ORTHO05D005074 3.5e-43 179.1 223 47.5
Thecc.04G026300 Theobroma cacao HOM05D004407 ORTHO05D005074 1.3e-42 177.2 222 50.5
Nitab4.5_0001863g0220 Nicotiana tabacum HOM05D004407 ORTHO05D005074 1.7e-42 176.8 229 45.9
Prupe.3G298600 Prunus persica HOM05D004407 ORTHO05D005074 1.1e-41 174.1 212 50.0
Gorai.012G091100 Gossypium raimondii HOM05D004407 ORTHO05D005074 4.3e-41 172.2 214 47.7
Nn4g22470 Nelumbo nucifera HOM05D004407 ORTHO05D005074 2.1e-40 169.9 217 44.2
Solyc02g093710.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 6.2e-40 168.3 208 45.7
Gohir.D04G080420 Gossypium hirsutum HOM05D004407 ORTHO05D005074 8.1e-40 167.9 214 46.7
CAN.G473.50 Capsicum annuum HOM05D004407 ORTHO05D005074 1.1e-39 167.5 213 46.0
Nn3g16588 Nelumbo nucifera HOM05D004407 ORTHO05D005074 1.1e-39 167.5 211 45.5
Sopen02g038350 Solanum pennellii HOM05D004407 ORTHO05D005074 1.8e-39 166.8 208 45.2
PGSC0003DMG400012626 Solanum tuberosum HOM05D004407 ORTHO05D005074 1.8e-39 166.8 209 44.5
Duzib187G1586 Durio zibethinus HOM05D004407 ORTHO05D005074 2.3e-39 166.4 214 49.1
Ciclev10017684m.g Citrus clementina HOM05D004407 ORTHO05D005074 3.1e-39 166.0 212 45.8
Actinidia05950 Actinidia chinensis HOM05D004407 ORTHO05D005074 4.0e-39 165.6 199 49.7
Manes.15G155400 Manihot esculenta HOM05D004407 ORTHO05D005074 5.2e-39 165.2 235 43.4
MD09G1018600 Malus domestica HOM05D004407 ORTHO05D005074 6.8e-39 164.9 217 45.6
FAN05G1079 Fragaria x ananassa HOM05D004407 ORTHO05D005074 1.2e-38 164.1 133 58.6
FvH4_6g52330 Fragaria vesca HOM05D004407 ORTHO05D005074 2.0e-38 163.3 209 45.5
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 5.8e-38 161.8 225 43.1
Thecc.04G026400 Theobroma cacao HOM05D004407 ORTHO05D005074 5.8e-38 161.8 230 46.5
MD17G1019100 Malus domestica HOM05D004407 ORTHO05D005074 7.5e-38 161.4 211 45.5
Potri.001G336200 Populus trichocarpa HOM05D004407 ORTHO05D005074 3.7e-37 159.1 209 44.5
Gohir.A09G032000 Gossypium hirsutum HOM05D004407 ORTHO05D005074 8.3e-37 157.9 220 45.5
Aqoxy3G01382 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 1.4e-36 157.1 206 42.7
TAR622G1038 Trochodendron aralioides HOM05D004407 ORTHO05D005074 1.4e-36 157.1 219 44.3
Cpa.g.sc130.51 Carica papaya HOM05D004407 ORTHO05D005074 7.1e-36 154.8 210 45.7
Gorai.006G037000 Gossypium raimondii HOM05D004407 ORTHO05D005074 1.6e-35 153.7 128 59.4
Rhsim10G0012400 Rhododendron simsii HOM05D004407 ORTHO05D005074 2.7e-35 152.9 164 48.8
Sabra16G0217100 Salix brachista HOM05D004407 ORTHO05D005074 2.7e-35 152.9 213 45.1
Oeu054661.1 Olea europaea HOM05D004407 ORTHO05D005074 3.5e-35 152.5 207 46.4
Eucgr.J02274 Eucalyptus grandis HOM05D004407 ORTHO05D005074 1.7e-34 150.2 224 40.2
Sed0027888 Sechium edule HOM05D004407 ORTHO05D005074 3.0e-34 149.4 207 44.4
PSO832G4071 Papaver somniferum HOM05D004407 ORTHO05D005074 3.9e-34 149.1 176 46.6
PSO017G7028 Papaver somniferum HOM05D004407 ORTHO05D005074 3.3e-33 146.0 177 46.9
PSO063G0264 Papaver somniferum HOM05D004407 ORTHO05D005074 4.3e-33 145.6 134 54.5
Ah.06g182110 Amaranthus hybridus HOM05D004407 ORTHO05D005074 5.6e-33 145.2 236 39.0
Cc07_g00320 Coffea canephora HOM05D004407 ORTHO05D005074 8.1e-32 141.4 238 42.0
MBI11_g29154_MAGBIO Magnolia biondii HOM05D004407 ORTHO05D005074 8.1e-32 141.4 215 42.8
Duzib264G0535 Durio zibethinus HOM05D004407 ORTHO05D005074 1.1e-31 141.0 122 54.9
VMungo1383G1696 Vigna mungo HOM05D004407 ORTHO05D005074 1.8e-31 140.2 129 55.8
PSO407G0367 Papaver somniferum HOM05D004407 ORTHO05D005074 3.1e-31 139.4 138 52.2
Potri.001G338100 Populus trichocarpa HOM05D004407 ORTHO05D005074 3.1e-31 139.4 125 56.8
EL10Ac4g07679 Beta vulgaris HOM05D004407 ORTHO05D005074 5.2e-31 138.7 122 53.3
DCAR_015072 Daucus carota HOM05D004407 ORTHO05D005074 6.8e-31 138.3 134 50.0
Rhsim10G0012300 Rhododendron simsii HOM05D004407 ORTHO05D005074 1.5e-30 137.1 203 42.9
Glyma.02G190900 Glycine max HOM05D004407 ORTHO05D005074 2.0e-30 136.7 203 43.8
Sed0009704 Sechium edule HOM05D004407 ORTHO05D005074 2.6e-30 136.3 88 71.6
Prupe.3G298500 Prunus persica HOM05D004407 ORTHO05D005074 4.4e-30 135.6 130 54.6
Sc03g0006940 Simmondsia chinensis HOM05D004407 ORTHO05D005074 9.9e-30 134.4 213 44.1
COL.COLO4_29257 Corchorus olitorius HOM05D004407 ORTHO05D005074 1.3e-29 134.0 87 72.4
Sc03g0006970 Simmondsia chinensis HOM05D004407 ORTHO05D005074 1.3e-29 134.0 213 44.1
ClCG09G019590 Citrullus lanatus HOM05D004407 ORTHO05D005074 1.7e-29 133.7 88 70.5
Gohir.A05G342300 Gossypium hirsutum HOM05D004407 ORTHO05D005074 2.2e-29 133.3 206 42.2
Aqoxy4G01774 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 2.9e-29 132.9 252 36.9
Aqoxy5G03597 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 2.9e-29 132.9 252 36.9
Phvul.008G156900 Phaseolus vulgaris HOM05D004407 ORTHO05D005074 3.8e-29 132.5 203 40.9
TAR625G1142 Trochodendron aralioides HOM05D004407 ORTHO05D005074 6.4e-29 131.7 127 54.3
Psat0s1368g0080 Pisum sativum HOM05D004407 ORTHO05D005074 8.4e-29 131.3 153 50.3
Hma1.2p1_1484F.1_g286410 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.9e-28 130.2 132 54.5
MELO3C021614.2 Cucumis melo HOM05D004407 ORTHO05D005074 2.4e-28 129.8 86 69.8
Hma1.2p1_0279F.1_g112130 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.4e-28 129.8 117 56.4
Dinv25704 Davidia involucrata HOM05D004407 ORTHO05D005074 3.2e-28 129.4 189 41.3
DCAR_015074 Daucus carota HOM05D004407 ORTHO05D005074 4.2e-28 129.0 123 51.2
GSVIVG01003970001 Vitis vinifera HOM05D004407 ORTHO05D005074 5.4e-28 128.6 101 57.4
CsaV3_5G026800 Cucumis sativus L. HOM05D004407 ORTHO05D005074 1.2e-27 127.5 220 39.1
FAN14G0353 Fragaria x ananassa HOM05D004407 ORTHO05D005074 1.2e-27 127.5 99 59.6
MSTRG.24058 Avicennia marina HOM05D004407 ORTHO05D005074 2.1e-27 126.7 131 49.6
Hma1.2p1_0818F.1_g223530 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.1e-27 126.7 132 53.8
Hma1.2p1_0818F.1_g223560 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.1e-27 126.7 133 54.1
Hma1.2p1_1484F.1_g286386 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 4.6e-27 125.6 133 54.1
Medtr1g051195 Medicago truncatula HOM05D004407 ORTHO05D005074 7.8e-27 124.8 173 42.8
CANSAT64G1834 Cannabis sativa HOM05D004407 ORTHO05D005074 1.3e-26 124.0 135 50.4
Ca_03872_v3 Cicer arietinum L. HOM05D004407 ORTHO05D005074 1.3e-26 124.0 206 38.8
Hma1.2p1_1484F.1_g286420 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 3.9e-26 122.5 133 52.6
Sed0005342 Sechium edule HOM05D004407 ORTHO05D005074 3.9e-26 122.5 211 43.1
Duzib187G1582 Durio zibethinus HOM05D004407 ORTHO05D005074 5.1e-26 122.1 246 34.6
Hma1.2p1_0818F.1_g223550 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 5.1e-26 122.1 133 51.9
PGR083G0848 Punica granatum HOM05D004407 ORTHO05D005074 8.7e-26 121.3 139 46.8
Hma1.2p1_0818F.1_g223510 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.5e-25 120.6 133 51.9
Peaxi162Scf00420g00249 Petunia axillaris HOM05D004407 ORTHO05D005074 2.5e-25 119.8 213 39.4
TPR.G1105 Trifolium pratense HOM05D004407 ORTHO05D005074 2.5e-25 119.8 145 48.3
TPR.G1219 Trifolium pratense HOM05D004407 ORTHO05D005074 3.3e-25 119.4 145 47.6
RcHm_v2.0_Chr2g0173921 Rosa chinensis HOM05D004407 ORTHO05D005074 5.6e-25 118.6 180 41.1
Hma1.2p1_1484F.1_g286390 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.6e-24 117.1 133 50.4
Lsat_1_v5_gn_2_93521 Lactuca sativa HOM05D004407 ORTHO05D005074 2.8e-24 116.3 131 48.9
Migut.H00046 Erythranthe guttata HOM05D004407 ORTHO05D005074 3.6e-24 115.9 128 55.5
SGA_v2.0_scaffold47G17536 Striga asiatica HOM05D004407 ORTHO05D005074 3.6e-24 115.9 204 37.7
AUR62020325 Chenopodium quinoa HOM05D004407 ORTHO05D005074 4.7e-24 115.5 241 37.3
Gohir.A11G065600 Gossypium hirsutum HOM05D004407 ORTHO05D005074 4.7e-24 115.5 212 36.3
Migut.K01432 Erythranthe guttata HOM05D004407 ORTHO05D005074 6.2e-24 115.2 220 44.5
PGR083G1149 Punica granatum HOM05D004407 ORTHO05D005074 6.2e-24 115.2 136 46.3
ECA238G3732 Erigeron canadensis HOM05D004407 ORTHO05D005074 1.8e-23 113.6 210 40.0
TAR374G1728 Trochodendron aralioides HOM05D004407 ORTHO05D005074 4.0e-23 112.5 194 38.7
Sabra16G0218800 Salix brachista HOM05D000111 ORTHO05D000134 6.9e-23 111.7 120 50.8
PGSC0003DMG400006921 Solanum tuberosum HOM05D004407 ORTHO05D005074 6.9e-23 111.7 129 46.5
BcaB07g31285 Brassica carinata HOM05D004407 ORTHO05D005074 1.2e-22 110.9 134 47.8
HanXRQChr09g0255761 Helianthus annuus HOM05D004407 ORTHO05D005074 2.6e-22 109.8 131 46.6
ECA238G3518 Erigeron canadensis HOM05D004407 ORTHO05D005074 9.9e-22 107.8 135 44.4
Sopen02g017070 Solanum pennellii HOM05D000413 ORTHO05D005074 1.7e-21 107.1 134 44.8
Gohir.D11G069800 Gossypium hirsutum HOM05D004407 ORTHO05D005074 3.8e-21 105.9 228 32.0
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 1.1e-20 104.4 84 58.3
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 1.1e-20 104.4 84 58.3
Gorai.007G074900 Gossypium raimondii HOM05D004407 ORTHO05D005074 1.1e-20 104.4 223 36.3
BcaC04g22350 Brassica carinata HOM05D004407 ORTHO05D005074 1.4e-20 104.0 84 57.1
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 1.4e-20 104.0 84 57.1
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 1.4e-20 104.0 84 57.1
BraA05t19239Z Brassica rapa HOM05D004407 ORTHO05D005074 4.6e-19 99.0 128 46.1
A05p02450 Brassica napus HOM05D004407 ORTHO05D005074 1.0e-18 97.8 133 45.1
A05p02470 Brassica napus HOM05D004407 ORTHO05D005074 3.9e-18 95.9 134 44.0
Carub.0005s0566 Capsella rubella HOM05D013829 ORTHO05D015952 3.9e-18 95.9 209 39.2
HanXRQChr14g0451031 Helianthus annuus HOM05D004407 ORTHO05D005074 3.9e-18 95.9 87 55.2
BcaNung02830 Brassica carinata HOM05D004407 ORTHO05D005074 5.1e-18 95.5 138 44.2
C04p02920 Brassica napus HOM05D004407 ORTHO05D005074 5.1e-18 95.5 135 44.4
BolC4t21933H Brassica oleracea HOM05D004407 ORTHO05D005074 5.1e-18 95.5 135 44.4
C04p02950 Brassica napus HOM05D004407 ORTHO05D005074 6.6e-18 95.1 136 42.6
BolC4t21935H Brassica oleracea HOM05D004407 ORTHO05D005074 6.6e-18 95.1 136 42.6
CARHR025870 Cardamine hirsuta HOM05D004407 ORTHO05D005074 8.7e-18 94.7 131 42.0
BcaNung02832 Brassica carinata HOM05D004407 ORTHO05D005074 1.1e-17 94.4 135 43.7
A05p02490 Brassica napus HOM05D004407 ORTHO05D005074 4.3e-17 92.4 132 41.7
BraA05t19242Z Brassica rapa HOM05D004407 ORTHO05D005074 4.3e-17 92.4 132 41.7
A05p02480 Brassica napus HOM05D004407 ORTHO05D005074 7.3e-17 91.7 136 41.2
BraA05t19241Z Brassica rapa HOM05D004407 ORTHO05D005074 7.3e-17 91.7 136 41.2
Sp2g16550 Schrenkiella parvula HOM05D013829 ORTHO05D015952 9.6e-17 91.3 207 38.6
BraA05t19240Z Brassica rapa HOM05D004407 ORTHO05D005074 1.6e-16 90.5 134 42.5
C04p02940 Brassica napus HOM05D004407 ORTHO05D005074 2.1e-16 90.1 138 41.3
BolC4t21934H Brassica oleracea HOM05D004407 ORTHO05D005074 2.1e-16 90.1 138 41.3
unitig_747.g21864 Utricularia gibba HOM05D004407 ORTHO05D005074 1.4e-15 87.4 205 32.7
Thhalv10019315m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 6.9e-15 85.1 89 48.3
C07p36420 Brassica napus HOM05D013829 ORTHO05D015952 4.5e-14 82.4 209 34.0
A06p41240 Brassica napus HOM05D013829 ORTHO05D015952 1.3e-13 80.9 211 35.5
BraA06t27048Z Brassica rapa HOM05D013829 ORTHO05D015952 1.3e-13 80.9 211 35.5
BcaC06g33826 Brassica carinata HOM05D013829 ORTHO05D015952 1.7e-13 80.5 209 37.8
SEGI_17639 Sequoiadendron giganteum HOM05D050174 ORTHO05D005074 2.2e-13 80.1 214 31.3
AL5G16690 Arabidopsis lyrata HOM05D013829 ORTHO05D015952 3.8e-13 79.3 207 34.3
ECA232G1846 Erigeron canadensis HOM05D004407 ORTHO05D005074 3.8e-13 79.3 197 39.6
HPP92_009916 Vanilla planifolia HOM05D004407 ORTHO05D005074 3.8e-13 79.3 108 36.1
Solyc02g067935.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 1.1e-12 77.8 71 52.1
AT3G27355 Arabidopsis thaliana HOM05D013829 ORTHO05D015952 1.4e-12 77.4 212 34.0
CARHR148680 Cardamine hirsuta HOM05D013829 ORTHO05D015952 1.4e-12 77.4 124 43.5
HPP92_009915 Vanilla planifolia HOM05D004407 ORTHO05D005074 2.4e-12 76.6 84 46.4
BcaNung02831 Brassica carinata HOM05D004407 ORTHO05D005074 4.2e-12 75.9 120 40.8
Sp4g23980 Schrenkiella parvula HOM05D004407 ORTHO05D005074 4.2e-12 75.9 131 38.9
Lsat_1_v5_gn_4_184741 Lactuca sativa HOM05D004407 ORTHO05D005074 5.4e-12 75.5 222 32.9
BolC7t44160H Brassica oleracea HOM05D013829 ORTHO05D015952 1.2e-11 74.3 215 34.0
SGA_v2.0_scaffold154G37145 Striga asiatica HOM05D002760 ORTHO05D003169 3.5e-11 72.8 60 58.3
AT2G41730 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 1.8e-10 70.5 131 36.6
CANSAT64G1789 Cannabis sativa HOM05D004407 ORTHO05D005074 3.9e-10 69.3 129 40.3
BcaNung05649 Brassica carinata HOM05D013829 ORTHO05D015952 1.6e-08 63.9 120 42.5
Medtr4g061650 Medicago truncatula HOM05D004407 ORTHO05D005074 2.8e-08 63.2 53 62.3
AT5G24640 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 3.7e-08 62.8 86 40.7
BcaB06g27546 Brassica carinata HOM05D002760 ORTHO05D003169 1.1e-07 61.2 28 96.4
AL4G40040 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 1.4e-07 60.8 86 40.7
PSO782G3492 Papaver somniferum HOM05D004407 ORTHO05D005074 5.3e-07 58.9 251 33.9
Nitab4.5_0000040g0600 Nicotiana tabacum HOM05D004407 ORTHO05D005074 9.0e-07 58.2 132 31.1


User provided reference genes

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