Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC4t26336H Brassica oleracea HOM05D005844 ORTHO05D007203 3.0e-168 595.1 308 100.0
BraA04t17017Z Brassica rapa HOM05D005844 ORTHO05D007203 4.0e-160 568.2 293 98.3
C04p47350 Brassica napus HOM05D005844 ORTHO05D007203 2.2e-134 482.6 273 92.7
A04p13570 Brassica napus HOM05D005844 ORTHO05D007203 1.9e-130 469.5 270 91.5
Sp7g01340 Schrenkiella parvula HOM05D005844 ORTHO05D007203 2.1e-124 449.5 269 85.9
Thhalv10027875m.g Eutrema salsugineum HOM05D005844 ORTHO05D007203 4.0e-120 435.3 270 83.7
BcaB06g27527 Brassica carinata HOM05D005844 ORTHO05D007203 2.4e-117 426.0 270 85.2
BcaB02g07945 Brassica carinata HOM05D005844 ORTHO05D007203 3.0e-115 419.1 271 83.0
Carub.0007s3499 Capsella rubella HOM05D005844 ORTHO05D007203 5.6e-106 388.3 272 77.9
AT5G40530 Arabidopsis thaliana HOM05D005844 ORTHO05D007203 4.8e-105 385.2 270 77.4
THA.LOC104823955 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 1.1e-101 374.0 273 73.3
AL7G49290 Arabidopsis lyrata HOM05D005844 ORTHO05D007203 1.1e-98 364.0 214 85.0
THA.LOC104805364 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 2.4e-96 356.3 270 70.0
Aa31LG9G1090 Aethionema arabicum HOM05D005844 ORTHO05D007203 5.8e-95 351.7 272 69.9
Ciclev10016139m.g Citrus clementina HOM05D005844 ORTHO05D007203 5.3e-88 328.6 235 68.1
Cpa.g.c26638.3 Carica papaya HOM05D005844 ORTHO05D007203 7.6e-87 324.7 273 62.6
Potri.001G344000 Populus trichocarpa HOM05D005844 ORTHO05D007203 1.7e-86 323.6 232 68.5
Gohir.A05G355200 Gossypium hirsutum HOM05D005844 ORTHO05D007203 2.2e-86 323.2 270 63.7
Gohir.D04G058000 Gossypium hirsutum HOM05D005844 ORTHO05D007203 1.4e-85 320.5 270 63.3
Gorai.012G064700 Gossypium raimondii HOM05D005844 ORTHO05D007203 4.2e-85 318.9 270 63.0
Duzib187G1685 Durio zibethinus HOM05D005844 ORTHO05D007203 2.7e-84 316.2 274 62.8
Manes.15G150500 Manihot esculenta HOM05D005844 ORTHO05D007203 7.9e-84 314.7 250 65.2
Thecc.04G018700 Theobroma cacao HOM05D005844 ORTHO05D007203 1.1e-82 310.8 274 60.6
FAN05G4937 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.9e-82 310.1 272 60.3
Prupe.3G293000 Prunus persica HOM05D005844 ORTHO05D007203 1.9e-82 310.1 188 77.1
RcHm_v2.0_Chr2g0173161 Rosa chinensis HOM05D005844 ORTHO05D007203 1.9e-82 310.1 246 64.2
FAN09G1449 Fragaria x ananassa HOM05D005844 ORTHO05D007203 2.5e-82 309.7 266 61.7
QL02p074142 Quercus lobata HOM05D005844 ORTHO05D007203 2.5e-82 309.7 271 60.1
FAN14G2428 Fragaria x ananassa HOM05D005844 ORTHO05D007203 3.3e-82 309.3 267 61.4
Nn4g22606 Nelumbo nucifera HOM05D005844 ORTHO05D007203 3.3e-82 309.3 230 66.1
COL.COLO4_29165 Corchorus olitorius HOM05D005844 ORTHO05D007203 7.4e-82 308.1 202 72.3
Actinidia36121 Actinidia chinensis HOM05D005844 ORTHO05D007203 1.3e-81 307.4 231 64.5
Sabra16G0223300 Salix brachista HOM05D005844 ORTHO05D007203 1.6e-81 307.0 249 63.5
FvH4_6g51630 Fragaria vesca HOM05D005844 ORTHO05D007203 4.8e-81 305.4 266 61.3
FAN02G1237 Fragaria x ananassa HOM05D005844 ORTHO05D007203 4.8e-81 305.4 266 60.9
Sc16g0003190 Simmondsia chinensis HOM05D005844 ORTHO05D007203 4.8e-81 305.4 203 71.4
Actinidia05987 Actinidia chinensis HOM05D005844 ORTHO05D007203 8.2e-81 304.7 231 64.9
Aqoxy5G03753 Aquilegia oxysepala HOM05D005844 ORTHO05D007203 1.1e-80 304.3 269 60.6
PGR142G0612 Punica granatum HOM05D005844 ORTHO05D007203 1.1e-80 304.3 240 63.3
TWI36G0829 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 1.1e-80 304.3 218 67.0
TWI56G0011 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 1.1e-80 304.3 260 60.4
Cfa007347 Carpinus fangiana HOM05D005844 ORTHO05D007203 2.4e-80 303.1 211 68.7
CsaV3_5G027090 Cucumis sativus L. HOM05D005844 ORTHO05D007203 2.4e-80 303.1 275 58.9
HanXRQChr02g0043121 Helianthus annuus HOM05D005844 ORTHO05D007203 5.3e-80 302.0 218 66.5
CiPaw.03G045000 Carya illinoinensis HOM05D005844 ORTHO05D007203 6.9e-80 301.6 266 58.3
Rhsim10G0015300 Rhododendron simsii HOM05D005844 ORTHO05D007203 2.0e-79 300.1 270 59.3
Rhsim10G0016000 Rhododendron simsii HOM05D005844 ORTHO05D007203 2.0e-79 300.1 270 59.3
Sed0014974 Sechium edule HOM05D005844 ORTHO05D007203 2.0e-79 300.1 251 63.3
MD17G1023500 Malus domestica HOM05D005844 ORTHO05D007203 2.6e-79 299.7 274 57.7
ClCG09G019300 Citrullus lanatus HOM05D005844 ORTHO05D007203 3.4e-79 299.3 275 58.2
Glyma.16G069400 Glycine max HOM05D005844 ORTHO05D007203 4.5e-79 298.9 296 54.7
vmacro05871 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 4.5e-79 298.9 277 57.4
SalBow7G1242 Salvia bowleyana HOM05D005844 ORTHO05D007203 5.9e-79 298.5 214 68.2
Solyc02g093390.4 Solanum lycopersicum HOM05D005844 ORTHO05D007203 7.7e-79 298.1 218 65.6
Dinv33434 Davidia involucrata HOM05D005844 ORTHO05D007203 1.0e-78 297.7 230 62.6
Lj1g0026070 Lotus japonicus HOM05D005844 ORTHO05D007203 1.7e-78 297.0 214 67.8
Phvul.004G044500 Phaseolus vulgaris HOM05D005844 ORTHO05D007203 1.7e-78 297.0 228 63.6
Dinv09631 Davidia involucrata HOM05D005844 ORTHO05D007203 2.2e-78 296.6 230 62.2
CANSAT64G0956 Cannabis sativa HOM05D005844 ORTHO05D007203 2.9e-78 296.2 252 60.3
MELO3C021585.2 Cucumis melo HOM05D005844 ORTHO05D007203 5.0e-78 295.4 250 62.4
Hma1.2p1_2550F.1_g324230 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 8.5e-78 294.7 260 61.9
Os02g0593900 Oryza sativa ssp. japonica HOM05D005844 ORTHO05D007203 1.4e-77 293.9 212 65.6
Glyma.19G056800 Glycine max HOM05D005844 ORTHO05D007203 1.9e-77 293.5 247 61.5
GSVIVG01032391001 Vitis vinifera HOM05D005844 ORTHO05D007203 1.9e-77 293.5 202 68.3
VMungo1215G2157 Vigna mungo HOM05D005844 ORTHO05D007203 2.5e-77 293.1 218 66.1
Eucgr.I01735 Eucalyptus grandis HOM05D005844 ORTHO05D007203 3.2e-77 292.7 228 62.3
unitig_46.g18705 Utricularia gibba HOM05D005844 ORTHO05D007203 5.5e-77 292.0 216 64.8
Cc07_g01570 Coffea canephora HOM05D005844 ORTHO05D007203 7.2e-77 291.6 208 65.9
Medtr7g033530 Medicago truncatula HOM05D005844 ORTHO05D007203 7.2e-77 291.6 230 62.2
CSS0012729 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 1.2e-76 290.8 272 56.6
Medtr2g062880 Medicago truncatula HOM05D005844 ORTHO05D007203 1.6e-76 290.4 232 61.2
ECA247G4055 Erigeron canadensis HOM05D005844 ORTHO05D007203 2.1e-76 290.0 269 57.6
SGA_v2.0_scaffold18G08274 Striga asiatica HOM05D005844 ORTHO05D007203 2.1e-76 290.0 208 65.9
Dinv07356 Davidia involucrata HOM05D005844 ORTHO05D007203 2.7e-76 289.7 184 71.7
VMungo0464G1123 Vigna mungo HOM05D005844 ORTHO05D007203 2.7e-76 289.7 214 65.0
Zm00001eb205620 Zea mays HOM05D005844 ORTHO05D007203 2.7e-76 289.7 220 62.3
PSO407G0181 Papaver somniferum HOM05D005844 ORTHO05D007203 7.9e-76 288.1 230 63.5
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 1.4e-75 287.3 203 66.0
MSTRG.3288 Avicennia marina HOM05D005844 ORTHO05D007203 1.4e-75 287.3 269 56.1
DCAR_021727 Daucus carota HOM05D005844 ORTHO05D007203 1.4e-75 287.3 202 67.3
PSO111G0092 Papaver somniferum HOM05D005844 ORTHO05D007203 1.8e-75 287.0 230 63.0
Lalb_Chr08g0243241 Lupinus albus HOM05D005844 ORTHO05D007203 3.9e-75 285.8 271 56.8
Nitab4.5_0003318g0030 Nicotiana tabacum HOM05D005844 ORTHO05D007203 8.8e-75 284.6 271 58.3
Migut.K01404 Erythranthe guttata HOM05D005844 ORTHO05D007203 1.5e-74 283.9 267 58.4
PGSC0003DMG400012605 Solanum tuberosum HOM05D005844 ORTHO05D007203 2.0e-74 283.5 271 57.2
ATR0824G194 Amborella trichopoda HOM05D005844 ORTHO05D007203 3.3e-74 282.7 271 57.2
Sopen02g037980 Solanum pennellii HOM05D005844 ORTHO05D007203 7.4e-74 281.6 270 57.0
TAR629G2614 Trochodendron aralioides HOM05D005844 ORTHO05D007203 3.7e-73 279.3 223 61.9
Haze_14753 Corylus avellana HOM05D005844 ORTHO05D007203 4.8e-73 278.9 247 57.9
Nitab4.5_0001860g0130 Nicotiana tabacum HOM05D005844 ORTHO05D007203 1.1e-72 277.7 272 56.6
HPP92_020245 Vanilla planifolia HOM05D005844 ORTHO05D007203 3.4e-71 272.7 266 56.8
CARHR261450 Cardamine hirsuta HOM05D005844 ORTHO05D007203 1.3e-70 270.8 161 83.9
SMO169G0126 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 1.1e-69 267.7 178 70.8
Mapoly0055s0119 Marchantia polymorpha HOM05D005844 ORTHO05D007203 2.7e-68 263.1 217 57.6
Psat4g044480 Pisum sativum HOM05D005844 ORTHO05D007203 2.7e-68 263.1 263 54.0
CDE09G0856 Ceratophyllum demersum HOM05D005844 ORTHO05D007203 1.4e-67 260.8 183 66.7
AagrBONN_evm.TU.Sc2ySwM_344.1282 Anthoceros agrestis HOM05D005844 ORTHO05D007203 5.7e-66 255.4 268 53.4
Pp3c18_8570 Physcomitrium patens HOM05D005844 ORTHO05D007203 1.7e-65 253.8 186 62.9
Cfa007344 Carpinus fangiana HOM05D005844 ORTHO05D007203 6.3e-65 251.9 276 53.6
CSS0002651 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 2.4e-64 250.0 272 51.8
CBR_g37477 Chara braunii HOM05D005844 ORTHO05D007203 5.9e-63 245.4 236 53.8
PSO754G0028 Papaver somniferum HOM05D005844 ORTHO05D007203 1.3e-62 244.2 234 54.3
arahy.Tifrunner.gnm1.ann1.V6CENM Arachis hypogaea HOM05D005844 ORTHO05D007203 1.6e-60 237.3 211 55.5
Lj7A600G48 Lonicera japonica HOM05D005844 ORTHO05D007203 2.1e-60 236.9 164 68.9
Hma1.2p1_1747F.1_g300470 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 2.7e-60 236.5 164 70.7
Ca_08532_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 2.3e-59 233.4 262 51.1
Ca_25854_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 5.7e-58 228.8 202 57.9
Ah.03g137020 Amaranthus hybridus HOM05D001812 ORTHO05D001874 1.7e-57 227.3 193 59.1
Lsat_1_v5_gn_1_11001 Lactuca sativa HOM05D005844 ORTHO05D007203 4.8e-57 225.7 156 71.2
CAN.G473.16 Capsicum annuum HOM05D005844 ORTHO05D007203 1.1e-56 224.6 174 64.9
Peaxi162Scf00129g01647 Petunia axillaris HOM05D005844 ORTHO05D007203 7.0e-56 221.9 164 65.9
EL10Ac6g14092 Beta vulgaris HOM05D005844 ORTHO05D007203 2.6e-55 219.9 251 49.0
MBI06_g16054_MAGBIO Magnolia biondii HOM05D005844 ORTHO05D007203 6.1e-52 208.8 276 44.2
Cfa007349 Carpinus fangiana HOM05D005844 ORTHO05D007203 5.3e-48 195.7 214 55.1
MCO16G365 Micromonas commoda HOM05D005844 ORTHO05D007203 2.0e-47 193.7 188 52.1
Cre07.g323450 Chlamydomonas reinhardtii HOM05D005844 ORTHO05D007203 3.0e-43 179.9 163 53.4
TPR.G1078 Trifolium pratense HOM05D005844 ORTHO05D007203 7.5e-42 175.3 120 66.7
BolC4t27198H Brassica oleracea HOM05D005844 ORTHO05D007203 3.1e-40 169.9 195 57.4
TPR.G11046 Trifolium pratense HOM05D005844 ORTHO05D007203 2.0e-39 167.2 141 59.6
vmacro09039 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 1.3e-38 164.5 288 42.0
SHI16461 Sapria himalayana HOM05D005844 ORTHO05D007203 1.7e-38 164.1 267 38.6
PRCOL_00001214 Prasinoderma coloniale HOM05D005844 ORTHO05D007203 2.5e-37 160.2 194 45.9
SMO202G0011 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 1.7e-33 147.5 116 62.1
Cfa024741 Carpinus fangiana HOM05D005844 ORTHO05D007203 1.1e-29 134.8 193 38.9
Atru.chr6.2417 Acer truncatum HOM05D005844 ORTHO05D007203 3.1e-27 126.7 107 59.8
TPR.G35964 Trifolium pratense HOM05D005844 ORTHO05D007203 9.8e-26 121.7 70 78.6
QL12p001810 Quercus lobata HOM05D005844 ORTHO05D007203 1.9e-24 117.5 72 73.6
TAR629G1250 Trochodendron aralioides HOM05D005844 ORTHO05D007203 3.9e-22 109.8 102 55.9
CARHR261460 Cardamine hirsuta HOM05D005844 ORTHO05D007203 4.7e-20 102.8 56 85.7
SHI16462 Sapria himalayana HOM05D005844 ORTHO05D007203 7.3e-13 79.0 81 50.6
Atru.chr2.3681 Acer truncatum HOM05D005844 ORTHO05D007203 1.1e-08 65.1 58 56.9
SEGI_32629 Sequoiadendron giganteum HOM05D005844 ORTHO05D007203 1.4e-08 64.7 62 53.2
Rhsim10G0015100 Rhododendron simsii HOM05D014363 ORTHO05D019497 4.1e-08 63.2 39 74.4
AUR62043289 Chenopodium quinoa HOM05D005844 ORTHO05D007203 6.0e-07 59.3 33 75.8


User provided reference genes

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