Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC4t26197H Brassica oleracea HOM05D000380 ORTHO05D040516 1.1e-38 162.9 85 100.0
C02p43370 Brassica napus HOM05D020815 ORTHO05D040516 1.7e-36 155.6 85 95.3
BcaC03g15174 Brassica carinata HOM05D000380 ORTHO05D000561 3.7e-15 84.7 45 91.1
A02p16440 Brassica napus HOM05D000380 ORTHO05D000561 3.7e-15 84.7 45 91.1
C02p27490 Brassica napus HOM05D000380 ORTHO05D000561 3.7e-15 84.7 45 91.1
BolC2t08808H Brassica oleracea HOM05D000380 ORTHO05D000561 3.7e-15 84.7 45 91.1
BraA02t06703Z Brassica rapa HOM05D000380 ORTHO05D000561 1.4e-14 82.8 45 88.9
BcaB05g24545 Brassica carinata HOM05D000380 ORTHO05D000561 1.6e-10 69.3 45 77.8
TPR.G29548 Trifolium pratense HOM05D000380 ORTHO05D000561 5.1e-09 64.3 67 58.2
Glyma.08G288600 Glycine max HOM05D000380 ORTHO05D000561 1.5e-08 62.8 55 61.8
Glyma.18G136200 Glycine max HOM05D000380 ORTHO05D000561 1.5e-08 62.8 55 61.8
Medtr8g063790 Medicago truncatula HOM05D000380 ORTHO05D000561 1.5e-08 62.8 67 56.7
Psat4g125000 Pisum sativum HOM05D000380 ORTHO05D000561 1.5e-08 62.8 67 56.7
Thecc.02G245900 Theobroma cacao HOM05D000380 ORTHO05D000561 2.5e-08 62.0 55 61.8
Ca_22747_v3 Cicer arietinum L. HOM05D000380 ORTHO05D000561 3.3e-08 61.6 73 52.1
VMungo0251G1735 Vigna mungo HOM05D000380 ORTHO05D000561 3.3e-08 61.6 73 53.4
Gorai.005G183800 Gossypium raimondii HOM05D000380 ORTHO05D000561 5.7e-08 60.8 55 61.8
AL1G37620 Arabidopsis lyrata HOM05D000380 ORTHO05D000561 7.4e-08 60.5 73 54.8
Gohir.A03G140900 Gossypium hirsutum HOM05D000380 ORTHO05D000561 7.4e-08 60.5 55 61.8
BcaB07g32362 Brassica carinata HOM05D000380 ORTHO05D000561 9.7e-08 60.1 56 57.1
AL2G29590 Arabidopsis lyrata HOM05D000380 ORTHO05D000561 1.3e-07 59.7 54 64.8
AT1G70290 Arabidopsis thaliana HOM05D000380 ORTHO05D000561 1.3e-07 59.7 53 64.2
COL.COLO4_19520 Corchorus olitorius HOM05D000380 ORTHO05D000561 1.3e-07 59.7 54 63.0
Carub.0002s1697 Capsella rubella HOM05D000380 ORTHO05D000561 1.7e-07 59.3 57 63.2
Duzib251G0542 Durio zibethinus HOM05D000380 ORTHO05D000561 1.7e-07 59.3 54 63.0
AT1G23870 Arabidopsis thaliana HOM05D000380 ORTHO05D000561 2.2e-07 58.9 73 53.4
arahy.Tifrunner.gnm1.ann1.AKPI0I Arachis hypogaea HOM05D000380 ORTHO05D000561 2.2e-07 58.9 73 49.3
BcaB03g11957 Brassica carinata HOM05D000380 ORTHO05D000561 2.2e-07 58.9 53 60.4
BcaB03g11958 Brassica carinata HOM05D000380 ORTHO05D000561 2.2e-07 58.9 53 60.4
A08p27980 Brassica napus HOM05D000380 ORTHO05D000561 2.2e-07 58.9 52 61.5
BraA08t34729Z Brassica rapa HOM05D000380 ORTHO05D000561 2.2e-07 58.9 52 61.5
Carub.0001s2336 Capsella rubella HOM05D000380 ORTHO05D000561 2.2e-07 58.9 73 53.4
Lj4g0012447 Lotus japonicus HOM05D000380 ORTHO05D000561 2.2e-07 58.9 68 52.9
arahy.Tifrunner.gnm1.ann1.CM68RF Arachis hypogaea HOM05D000380 ORTHO05D000561 2.8e-07 58.5 73 52.1
BcaC07g39219 Brassica carinata HOM05D000380 ORTHO05D000561 3.7e-07 58.2 52 61.5
C08p22140 Brassica napus HOM05D000380 ORTHO05D000561 3.7e-07 58.2 52 61.5
BolC8t49860H Brassica oleracea HOM05D000380 ORTHO05D000561 3.7e-07 58.2 52 61.5
Duzib268G1813 Durio zibethinus HOM05D000380 ORTHO05D000561 3.7e-07 58.2 54 63.0
Thhalv10018114m.g Eutrema salsugineum HOM05D000380 ORTHO05D000561 3.7e-07 58.2 56 62.5
AT1G60140 Arabidopsis thaliana HOM05D000380 ORTHO05D000561 4.8e-07 57.8 54 61.1
Eucgr.B03950 Eucalyptus grandis HOM05D000380 ORTHO05D000561 4.8e-07 57.8 57 57.9
AL2G16520 Arabidopsis lyrata HOM05D000380 ORTHO05D000561 6.3e-07 57.4 54 59.3
Sp1g21220 Schrenkiella parvula HOM05D000380 ORTHO05D000561 6.3e-07 57.4 73 50.7
CARHR024270 Cardamine hirsuta HOM05D000380 ORTHO05D000561 8.2e-07 57.0 73 50.7
Phvul.003G053000 Phaseolus vulgaris HOM05D000380 ORTHO05D000561 8.2e-07 57.0 73 50.7
arahy.Tifrunner.gnm1.ann1.IE8W25 Arachis hypogaea HOM05D000380 ORTHO05D000561 1.1e-06 56.6 54 61.1
Glyma.02G033500 Glycine max HOM05D000380 ORTHO05D000561 1.1e-06 56.6 54 59.3
THA.LOC104819496 Tarenaya hassleriana HOM05D000380 ORTHO05D000561 1.1e-06 56.6 54 59.3
Atru.chr11.1999 Acer truncatum HOM05D000380 ORTHO05D000561 1.4e-06 56.2 55 60.0
Carub.0002s0511 Capsella rubella HOM05D000380 ORTHO05D000561 1.4e-06 56.2 54 61.1
Thhalv10006773m.g Eutrema salsugineum HOM05D000380 ORTHO05D000561 1.4e-06 56.2 71 50.7
Lalb_Chr16g0392441 Lupinus albus HOM05D000380 ORTHO05D000561 1.4e-06 56.2 73 47.9
CSS0017242 Camellia sinensis var. sinensis HOM05D000380 ORTHO05D000561 1.8e-06 55.8 50 60.0
Migut.E00153 Erythranthe guttata HOM05D000380 ORTHO05D000561 1.8e-06 55.8 52 59.6
QL03p061844 Quercus lobata HOM05D000380 ORTHO05D000561 1.8e-06 55.8 50 64.0
Rhsim12G0047800 Rhododendron simsii HOM05D000380 ORTHO05D000561 1.8e-06 55.8 49 61.2
VMungo1215G1617 Vigna mungo HOM05D000380 ORTHO05D000561 1.8e-06 55.8 54 59.3
Aa31LG7G7730 Aethionema arabicum HOM05D000380 ORTHO05D000561 2.4e-06 55.5 74 50.0
Glyma.01G031900 Glycine max HOM05D000380 ORTHO05D000561 2.4e-06 55.5 54 57.4
Phvul.002G072400 Phaseolus vulgaris HOM05D000380 ORTHO05D000561 2.4e-06 55.5 54 57.4
Sp2g04510 Schrenkiella parvula HOM05D000380 ORTHO05D000561 2.4e-06 55.5 54 61.1
Ciclev10030691m.g Citrus clementina HOM05D000380 ORTHO05D000561 3.1e-06 55.1 59 57.6
Nn8g40273 Nelumbo nucifera HOM05D000380 ORTHO05D000561 3.1e-06 55.1 61 52.5
CSS0032695 Camellia sinensis var. sinensis HOM05D000380 ORTHO05D000561 4.1e-06 54.7 53 58.5
CSS0047352 Camellia sinensis var. sinensis HOM05D000380 ORTHO05D000561 4.1e-06 54.7 53 58.5
CsaV3_1G001640 Cucumis sativus L. HOM05D000380 ORTHO05D000561 4.1e-06 54.7 49 63.3
Lj2g0015842 Lotus japonicus HOM05D000380 ORTHO05D000561 4.1e-06 54.7 73 50.7
BcaC02g10681 Brassica carinata HOM05D000380 ORTHO05D000561 5.3e-06 54.3 52 59.6
BolC4t24143H Brassica oleracea HOM05D000380 ORTHO05D000561 5.3e-06 54.3 52 59.6
FAN22G0429 Fragaria x ananassa HOM05D000380 ORTHO05D000561 5.3e-06 54.3 54 57.4
Manes.05G087900 Manihot esculenta HOM05D000380 ORTHO05D000561 5.3e-06 54.3 58 55.2
RcHm_v2.0_Chr4g0444141 Rosa chinensis HOM05D000380 ORTHO05D000561 5.3e-06 54.3 54 59.3
PGSC0003DMG400004114 Solanum tuberosum HOM05D000380 ORTHO05D000561 5.3e-06 54.3 47 59.6
ClCG05G025190 Citrullus lanatus HOM05D000380 ORTHO05D000561 6.9e-06 53.9 53 60.4
BcaC09g49430 Brassica carinata HOM05D000380 ORTHO05D000561 9.1e-06 53.5 51 56.9
C01p36820 Brassica napus HOM05D000380 ORTHO05D000561 9.1e-06 53.5 51 56.9
BolC1t03642H Brassica oleracea HOM05D000380 ORTHO05D000561 9.1e-06 53.5 51 56.9
CARHR052780 Cardamine hirsuta HOM05D000380 ORTHO05D000561 9.1e-06 53.5 70 52.9
Cc11_g14470 Coffea canephora HOM05D000380 ORTHO05D000561 9.1e-06 53.5 53 56.6
FvH4_4g34800 Fragaria vesca HOM05D000380 ORTHO05D000561 9.1e-06 53.5 54 57.4
FAN12G1194 Fragaria x ananassa HOM05D000380 ORTHO05D000561 9.1e-06 53.5 54 57.4
FAN17G0313 Fragaria x ananassa HOM05D000380 ORTHO05D000561 9.1e-06 53.5 54 57.4
Manes.01G198900 Manihot esculenta HOM05D000380 ORTHO05D000561 9.1e-06 53.5 55 58.2


User provided reference genes

Program Settings