Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27347 Brassica carinata HOM05D005344 ORTHO05D006444 5.3e-66 254.2 129 100.0
BolC4t26183H Brassica oleracea HOM05D005344 ORTHO05D006444 5.3e-66 254.2 129 100.0
BraA04t16898Z Brassica rapa HOM05D005344 ORTHO05D006444 5.3e-66 254.2 129 100.0
Sp7g02390 Schrenkiella parvula HOM05D005344 ORTHO05D006444 1.7e-64 249.2 127 98.4
Thhalv10027992m.g Eutrema salsugineum HOM05D005344 ORTHO05D006444 3.2e-63 245.0 127 96.1
Carub.0007s3634 Capsella rubella HOM05D005344 ORTHO05D006444 5.5e-63 244.2 127 96.9
AT5G39600 Arabidopsis thaliana HOM05D005344 ORTHO05D006444 2.1e-62 242.3 127 95.3
A04p12340 Brassica napus HOM05D005344 ORTHO05D006444 3.0e-61 238.4 121 99.2
C04p46010 Brassica napus HOM05D005344 ORTHO05D006444 3.0e-61 238.4 121 99.2
CARHR262690 Cardamine hirsuta HOM05D005344 ORTHO05D006444 1.1e-60 236.5 127 93.7
AL7G50710 Arabidopsis lyrata HOM05D005344 ORTHO05D006444 3.3e-60 235.0 127 92.1
Aa31LG9G16480 Aethionema arabicum HOM05D005344 ORTHO05D006444 1.3e-59 233.0 127 89.0
Potri.004G228566 Populus trichocarpa HOM05D005344 ORTHO05D006444 8.5e-56 220.3 129 85.3
CANSAT56G2098 Cannabis sativa HOM05D005344 ORTHO05D006444 1.1e-55 219.9 129 83.7
TAR381G0484 Trochodendron aralioides HOM05D005344 ORTHO05D006444 1.9e-55 219.2 129 82.9
Gohir.D05G218100 Gossypium hirsutum HOM05D005344 ORTHO05D006444 3.2e-55 218.4 129 83.7
PGR083G0019 Punica granatum HOM05D005344 ORTHO05D006444 3.2e-55 218.4 129 82.9
GSVIVG01009861001 Vitis vinifera HOM05D005344 ORTHO05D006444 3.2e-55 218.4 129 83.7
ECA236G2959 Erigeron canadensis HOM05D005344 ORTHO05D006444 4.2e-55 218.0 129 82.9
Manes.18G015800 Manihot esculenta HOM05D005344 ORTHO05D006444 4.2e-55 218.0 129 82.9
Cc10_g01930 Coffea canephora HOM05D005344 ORTHO05D006444 5.5e-55 217.6 129 82.9
Gohir.A05G214800 Gossypium hirsutum HOM05D005344 ORTHO05D006444 7.2e-55 217.2 129 82.9
Nn6g32300 Nelumbo nucifera HOM05D005344 ORTHO05D006444 7.2e-55 217.2 129 83.7
CSS0034614 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 9.4e-55 216.9 129 82.2
TWI75G1031 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 1.2e-54 216.5 129 83.7
Duzib093G0333 Durio zibethinus HOM05D005344 ORTHO05D006444 1.6e-54 216.1 129 82.2
Thecc.08G040900 Theobroma cacao HOM05D005344 ORTHO05D006444 2.7e-54 215.3 129 82.2
HanXRQChr04g0119171 Helianthus annuus HOM05D005344 ORTHO05D006444 3.6e-54 214.9 129 82.9
PGR102G3231 Punica granatum HOM05D005344 ORTHO05D006444 3.6e-54 214.9 127 81.9
CANSAT56G2754 Cannabis sativa HOM05D005344 ORTHO05D006444 4.7e-54 214.5 129 82.2
Cpa.g.sc116.53 Carica papaya HOM05D005344 ORTHO05D006444 4.7e-54 214.5 127 81.9
Dinv39499 Davidia involucrata HOM05D005344 ORTHO05D006444 4.7e-54 214.5 129 82.2
Eucgr.F01631 Eucalyptus grandis HOM05D005344 ORTHO05D006444 6.1e-54 214.2 124 84.7
CiPaw.08G064300 Carya illinoinensis HOM05D005344 ORTHO05D006444 1.4e-53 213.0 129 81.4
Lsat_1_v5_gn_7_29421 Lactuca sativa HOM05D005344 ORTHO05D006444 1.4e-53 213.0 129 82.2
Atru.chr12.1135 Acer truncatum HOM05D005344 ORTHO05D006444 1.8e-53 212.6 127 81.9
HanXRQChr15g0480961 Helianthus annuus HOM05D005344 ORTHO05D006444 1.8e-53 212.6 129 82.2
Sc02g0008440 Simmondsia chinensis HOM05D005344 ORTHO05D006444 3.9e-53 211.5 129 79.1
TWI31G0971 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 3.9e-53 211.5 129 81.4
arahy.Tifrunner.gnm1.ann1.Y8FRL8 Arachis hypogaea HOM05D005344 ORTHO05D006444 5.2e-53 211.1 129 80.6
Prupe.1G182400 Prunus persica HOM05D005344 ORTHO05D006444 6.7e-53 210.7 129 79.8
Prupe.1G368800 Prunus persica HOM05D005344 ORTHO05D006444 1.1e-52 209.9 129 79.8
Solyc04g081220.3 Solanum lycopersicum HOM05D005344 ORTHO05D006444 2.0e-52 209.1 129 79.1
Sopen04g034830 Solanum pennellii HOM05D005344 ORTHO05D006444 2.0e-52 209.1 129 79.1
PGSC0003DMG400003723 Solanum tuberosum HOM05D005344 ORTHO05D006444 2.0e-52 209.1 129 79.8
Nitab4.5_0001988g0010 Nicotiana tabacum HOM05D005344 ORTHO05D006444 2.6e-52 208.8 129 78.3
Sabra01G0173600 Salix brachista HOM05D005344 ORTHO05D006444 2.6e-52 208.8 120 85.8
Sed0018322 Sechium edule HOM05D005344 ORTHO05D006444 3.3e-52 208.4 127 78.7
MD02G1241500 Malus domestica HOM05D005344 ORTHO05D006444 4.4e-52 208.0 129 78.3
QL02p011006 Quercus lobata HOM05D005344 ORTHO05D006444 4.4e-52 208.0 128 79.7
Migut.N03145 Erythranthe guttata HOM05D005344 ORTHO05D006444 5.7e-52 207.6 129 78.3
Nitab4.5_0006992g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 7.4e-52 207.2 129 78.3
SGA_v2.0_scaffold47G17494 Striga asiatica HOM05D005344 ORTHO05D006444 7.4e-52 207.2 129 78.3
MD07G1075400 Malus domestica HOM05D005344 ORTHO05D006444 9.7e-52 206.8 129 78.3
Potri.012G106900 Populus trichocarpa HOM05D005344 ORTHO05D006444 1.3e-51 206.5 119 85.7
QL03p018250 Quercus lobata HOM05D005344 ORTHO05D006444 1.7e-51 206.1 128 78.1
Rhsim07G0245900 Rhododendron simsii HOM05D005344 ORTHO05D006444 1.7e-51 206.1 119 82.4
CsaV3_3G045650 Cucumis sativus L. HOM05D005344 ORTHO05D006444 2.2e-51 205.7 127 79.5
TPR.G38895 Trifolium pratense HOM05D005344 ORTHO05D006444 2.2e-51 205.7 129 78.3
Cfa013923 Carpinus fangiana HOM05D005344 ORTHO05D006444 3.7e-51 204.9 128 78.1
PSO541G4852 Papaver somniferum HOM05D005344 ORTHO05D006444 3.7e-51 204.9 129 77.5
PSO675G5369 Papaver somniferum HOM05D005344 ORTHO05D006444 3.7e-51 204.9 129 77.5
Peaxi162Scf00287g01714 Petunia axillaris HOM05D005344 ORTHO05D006444 3.7e-51 204.9 129 77.5
Psat5g014400 Pisum sativum HOM05D005344 ORTHO05D006444 4.8e-51 204.5 129 78.3
FAN15G2308 Fragaria x ananassa HOM05D005344 ORTHO05D006444 6.3e-51 204.1 129 78.3
RcHm_v2.0_Chr6g0302491 Rosa chinensis HOM05D005344 ORTHO05D006444 6.3e-51 204.1 129 78.3
TPR.G5807 Trifolium pratense HOM05D005344 ORTHO05D006444 6.3e-51 204.1 130 79.2
Gorai.009G225000 Gossypium raimondii HOM05D005344 ORTHO05D006444 1.1e-50 203.4 119 83.2
MSTRG.24255 Avicennia marina HOM05D005344 ORTHO05D006444 1.4e-50 203.0 129 77.5
CSS0046670 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 1.4e-50 203.0 121 82.6
Lj1g0020845 Lotus japonicus HOM05D005344 ORTHO05D006444 1.8e-50 202.6 129 80.6
CDE05G1229 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 2.4e-50 202.2 129 76.0
Medtr3g113260 Medicago truncatula HOM05D005344 ORTHO05D006444 2.4e-50 202.2 129 77.5
vmacro04337 Vaccinium macrocarpon HOM05D005344 ORTHO05D006444 2.4e-50 202.2 119 82.4
CSS0046173 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 3.1e-50 201.8 119 83.2
Actinidia15404 Actinidia chinensis HOM05D005344 ORTHO05D006444 7.0e-50 200.7 123 77.2
FvH4_2g38800 Fragaria vesca HOM05D005344 ORTHO05D006444 7.0e-50 200.7 129 76.7
Lalb_Chr11g0061991 Lupinus albus HOM05D005344 ORTHO05D006444 1.6e-49 199.5 129 78.3
COL.COLO4_32025 Corchorus olitorius HOM05D005344 ORTHO05D006444 2.0e-49 199.1 119 82.4
DCAR_013854 Daucus carota HOM05D005344 ORTHO05D006444 3.5e-49 198.4 119 80.7
Glyma.06G025600 Glycine max HOM05D005344 ORTHO05D006444 3.5e-49 198.4 129 76.7
Medtr1g013440 Medicago truncatula HOM05D005344 ORTHO05D006444 3.5e-49 198.4 129 76.0
Oeu031192.1 Olea europaea HOM05D005344 ORTHO05D006444 7.7e-49 197.2 119 79.0
ClCG05G018520 Citrullus lanatus HOM05D005344 ORTHO05D006444 1.0e-48 196.8 119 79.8
TAR625G0974 Trochodendron aralioides HOM05D005344 ORTHO05D006444 1.7e-48 196.1 129 73.6
Oeu024518.1 Olea europaea HOM05D005344 ORTHO05D006444 2.2e-48 195.7 119 79.0
Haze_22604 Corylus avellana HOM05D005344 ORTHO05D006444 3.8e-48 194.9 119 79.8
Glyma.04G025800 Glycine max HOM05D005344 ORTHO05D006444 3.8e-48 194.9 129 76.0
SalBow8G2912 Salvia bowleyana HOM05D005344 ORTHO05D006444 3.8e-48 194.9 119 79.0
arahy.Tifrunner.gnm1.ann1.0YI8WX Arachis hypogaea HOM05D005344 ORTHO05D006444 6.5e-48 194.1 119 78.2
Phvul.009G015400 Phaseolus vulgaris HOM05D005344 ORTHO05D006444 8.5e-48 193.7 129 76.7
unitig_899.g15276 Utricularia gibba HOM05D005344 ORTHO05D006444 8.5e-48 193.7 119 79.0
CDE05G1331 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 1.5e-47 193.0 119 77.3
Nitab4.5_0005425g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 1.5e-47 193.0 119 77.3
arahy.Tifrunner.gnm1.ann1.2J2T1L Arachis hypogaea HOM05D005344 ORTHO05D006444 3.2e-47 191.8 122 76.2
CAN.G1271.12 Capsicum annuum HOM05D005344 ORTHO05D006444 3.2e-47 191.8 119 77.3
AUR62035723 Chenopodium quinoa HOM05D005344 ORTHO05D006444 7.2e-47 190.7 146 67.1
Ca_16814_v3 Cicer arietinum L. HOM05D005344 ORTHO05D006444 9.4e-47 190.3 119 79.0
MELO3C003771.2 Cucumis melo HOM05D005344 ORTHO05D006444 9.4e-47 190.3 119 78.2
Aqoxy6G02944 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 1.2e-46 189.9 119 77.3
EL10Ac1g02258 Beta vulgaris HOM05D005344 ORTHO05D006444 1.2e-46 189.9 128 71.1
FAN20G2570 Fragaria x ananassa HOM05D005344 ORTHO05D006444 3.6e-46 188.3 119 76.5
Ciclev10002838m.g Citrus clementina HOM05D005344 ORTHO05D006444 6.1e-46 187.6 127 70.9
arahy.Tifrunner.gnm1.ann1.NGB00B Arachis hypogaea HOM05D005344 ORTHO05D006444 1.4e-45 186.4 119 76.5
TAR625G1223 Trochodendron aralioides HOM05D005344 ORTHO05D006444 1.4e-45 186.4 117 75.2
Aqoxy6G02319 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 4.0e-45 184.9 129 69.0
AUR62035436 Chenopodium quinoa HOM05D005344 ORTHO05D006444 4.0e-45 184.9 119 73.9
HPP92_014936 Vanilla planifolia HOM05D005344 ORTHO05D006444 8.8e-45 183.7 128 72.7
MBI05_g26505_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 9.7e-44 180.3 107 82.2
VMungo1309G2030 Vigna mungo HOM05D005344 ORTHO05D006444 4.8e-43 177.9 122 73.8
FvH4_1g25620 Fragaria vesca HOM05D005344 ORTHO05D006444 8.2e-43 177.2 127 70.1
SHI08085 Sapria himalayana HOM05D005344 ORTHO05D006444 1.4e-42 176.4 119 71.4
Manes.09G054100 Manihot esculenta HOM05D005344 ORTHO05D006444 2.7e-41 172.2 119 68.1
Atru.chr4.1572 Acer truncatum HOM05D005344 ORTHO05D006444 1.0e-40 170.2 133 69.9
FAN26G0652 Fragaria x ananassa HOM05D005344 ORTHO05D006444 5.0e-40 167.9 122 68.0
arahy.Tifrunner.gnm1.ann1.3U1GZ3 Arachis hypogaea HOM05D005344 ORTHO05D006444 1.1e-39 166.8 107 76.6
arahy.Tifrunner.gnm1.ann1.IGJ8TG Arachis hypogaea HOM05D005344 ORTHO05D006444 1.1e-39 166.8 105 79.0
ATR0665G498 Amborella trichopoda HOM05D005344 ORTHO05D006444 1.9e-39 166.0 129 68.2
FAN23G0736 Fragaria x ananassa HOM05D005344 ORTHO05D006444 1.9e-39 166.0 130 66.2
FAN19G0275 Fragaria x ananassa HOM05D005344 ORTHO05D006444 2.7e-38 162.2 121 67.8
arahy.Tifrunner.gnm1.ann1.Y1NSFR Arachis hypogaea HOM05D005344 ORTHO05D006444 3.7e-35 151.8 96 79.2
arahy.Tifrunner.gnm1.ann1.2QY3VR Arachis hypogaea HOM05D005344 ORTHO05D006444 1.8e-34 149.4 97 77.3
arahy.Tifrunner.gnm1.ann1.H9RICG Arachis hypogaea HOM05D005344 ORTHO05D006444 3.1e-34 148.7 95 77.9
MSTRG.22330 Avicennia marina HOM05D005344 ORTHO05D006444 4.1e-34 148.3 97 73.2
arahy.Tifrunner.gnm1.ann1.ZTTZ43 Arachis hypogaea HOM05D005344 ORTHO05D006444 5.4e-34 147.9 96 77.1
Pp3c9_11020 Physcomitrium patens HOM05D005344 ORTHO05D006444 2.0e-33 146.0 129 55.0
Mapoly0151s0020 Marchantia polymorpha HOM05D005344 ORTHO05D006444 5.9e-33 144.4 113 59.3
Os02g0282100 Oryza sativa ssp. japonica HOM05D005344 ORTHO05D006444 5.9e-33 144.4 143 53.1
MBI07_g11722_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 3.6e-30 135.2 87 75.9
Gorai.005G111500 Gossypium raimondii HOM05D005344 ORTHO05D006444 6.1e-30 134.4 100 67.0
Zm00001eb237200 Zea mays HOM05D005344 ORTHO05D006444 6.1e-30 134.4 141 51.8
Hund00462 Selenicereus undatus HOM05D005344 ORTHO05D006444 1.7e-27 126.3 113 54.0
AagrBONN_evm.TU.Sc2ySwM_117.1156 Anthoceros agrestis HOM05D005344 ORTHO05D006444 2.8e-27 125.6 99 56.6
ATR0605G109 Amborella trichopoda HOM05D005344 ORTHO05D006444 3.7e-27 125.2 92 70.7
arahy.Tifrunner.gnm1.ann1.3DP3ZG Arachis hypogaea HOM05D005344 ORTHO05D006444 3.6e-14 82.0 51 78.4
CSS0040415 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 3.2e-10 68.9 39 82.1
CSS0035037 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 6.6e-08 61.2 39 79.5
CBR_g48744 Chara braunii HOM05D005344 ORTHO05D006444 3.6e-06 55.5 66 39.4
Nn5g29273 Nelumbo nucifera HOM05D005344 ORTHO05D006444 4.7e-06 55.1 32 75.0


User provided reference genes

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