Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC4t26114H Brassica oleracea HOM05D029605 ORTHO05D027464 2.0e-203 712.2 362 100.0
C04p45310 Brassica napus HOM05D029605 ORTHO05D027464 9.6e-182 640.2 341 96.2
BcaC02g09663 Brassica carinata HOM05D029605 ORTHO05D027464 3.2e-68 263.1 341 50.7
A04p11590 Brassica napus HOM05D029605 ORTHO05D027464 2.9e-61 240.0 324 48.1
BraA04t16826Z Brassica rapa HOM05D000627 ORTHO05D000365 6.9e-55 218.8 167 74.9
Sp2g29570 Schrenkiella parvula HOM05D000627 ORTHO05D000365 6.1e-27 125.9 119 63.0
CARHR280540 Cardamine hirsuta HOM05D000627 ORTHO05D000365 7.5e-25 119.0 123 63.4
AL8G44250 Arabidopsis lyrata HOM05D000627 ORTHO05D000365 1.3e-24 118.2 119 61.3
BolC7t42986H Brassica oleracea HOM05D000627 ORTHO05D000365 1.7e-24 117.9 119 59.7
Carub.0008s2740 Capsella rubella HOM05D000627 ORTHO05D000365 1.7e-24 117.9 100 72.0
A07p16850 Brassica napus HOM05D000627 ORTHO05D000365 2.8e-24 117.1 119 59.7
Thhalv10004889m.g Eutrema salsugineum HOM05D000627 ORTHO05D000365 3.7e-24 116.7 117 59.8
BraA07t29410Z Brassica rapa HOM05D000627 ORTHO05D000365 4.8e-24 116.3 101 68.3
BcaC06g34791 Brassica carinata HOM05D000627 ORTHO05D000365 8.3e-24 115.5 146 52.1
AT5G67110 Arabidopsis thaliana HOM05D000627 ORTHO05D000365 1.1e-23 115.2 119 60.5
C07p24660 Brassica napus HOM05D000627 ORTHO05D000365 1.4e-23 114.8 119 58.8
Aa31LG1G15630 Aethionema arabicum HOM05D000627 ORTHO05D000365 2.3e-21 107.5 110 62.7
C02p51200 Brassica napus HOM05D000627 ORTHO05D000365 2.4e-15 87.4 83 67.5
BcaC03g17193 Brassica carinata HOM05D000627 ORTHO05D000365 7.8e-14 82.4 121 49.6
BolC2t11211H Brassica oleracea HOM05D000627 ORTHO05D000365 3.6e-11 73.6 70 68.6
Manes.18G039601 Manihot esculenta HOM05D000627 ORTHO05D000365 3.6e-11 73.6 116 47.4
GSVIVG01022111001 Vitis vinifera HOM05D000627 ORTHO05D000365 2.3e-10 70.9 101 53.5
QL02p004388 Quercus lobata HOM05D000627 ORTHO05D000365 4.0e-10 70.1 108 48.1
Duzib187G0566 Durio zibethinus HOM05D000627 ORTHO05D000365 1.5e-09 68.2 101 52.5
Ciclev10003738m.g Citrus clementina HOM05D000627 ORTHO05D000365 2.6e-09 67.4 111 45.9
PSO170G5241 Papaver somniferum HOM05D000627 ORTHO05D000365 2.6e-09 67.4 129 43.4
Ciclev10025735m.g Citrus clementina HOM05D000627 ORTHO05D000365 4.4e-09 66.6 102 47.1
Gohir.A11G193400 Gossypium hirsutum HOM05D000627 ORTHO05D000365 4.4e-09 66.6 84 56.0
Gohir.D11G200500 Gossypium hirsutum HOM05D000627 ORTHO05D000365 4.4e-09 66.6 84 56.0
Gorai.007G214800 Gossypium raimondii HOM05D000627 ORTHO05D000365 4.4e-09 66.6 84 56.0
PSO210G3967 Papaver somniferum HOM05D000627 ORTHO05D000365 4.4e-09 66.6 100 50.0
Potri.014G025800 Populus trichocarpa HOM05D000627 ORTHO05D000365 4.4e-09 66.6 117 44.4
Thecc.08G003800 Theobroma cacao HOM05D000627 ORTHO05D000365 4.4e-09 66.6 116 44.0
Dinv30001 Davidia involucrata HOM05D000627 ORTHO05D000365 5.8e-09 66.2 109 49.5
Duzib041G0344 Durio zibethinus HOM05D000627 ORTHO05D000365 5.8e-09 66.2 77 58.4
COL.COLO4_11443 Corchorus olitorius HOM05D000627 ORTHO05D000365 7.5e-09 65.9 84 56.0
FAN15G1551 Fragaria x ananassa HOM05D000627 ORTHO05D000365 7.5e-09 65.9 77 57.1
FAN20G1444 Fragaria x ananassa HOM05D000627 ORTHO05D000365 7.5e-09 65.9 77 57.1
RcHm_v2.0_Chr6g0308251 Rosa chinensis HOM05D000627 ORTHO05D000365 7.5e-09 65.9 77 57.1
Potri.002G124400 Populus trichocarpa HOM05D000627 ORTHO05D000365 1.3e-08 65.1 82 53.7
Cc07_g06130 Coffea canephora HOM05D000627 ORTHO05D000365 1.7e-08 64.7 87 54.0
FvH4_2g34100 Fragaria vesca HOM05D000627 ORTHO05D000365 1.7e-08 64.7 77 55.8
FAN24G0731 Fragaria x ananassa HOM05D000627 ORTHO05D000365 1.7e-08 64.7 77 55.8
Thecc.01G058800 Theobroma cacao HOM05D000627 ORTHO05D000365 1.7e-08 64.7 84 56.0
Cpa.g.sc21.176 Carica papaya HOM05D000627 ORTHO05D000365 2.2e-08 64.3 109 46.8
Duzib147G1372 Durio zibethinus HOM05D000627 ORTHO05D000365 2.2e-08 64.3 77 57.1
FAN27G3232 Fragaria x ananassa HOM05D000627 ORTHO05D000365 2.2e-08 64.3 77 55.8
Atru.chr13.723 Acer truncatum HOM05D000627 ORTHO05D000365 2.9e-08 63.9 116 42.2
arahy.Tifrunner.gnm1.ann1.90DV49 Arachis hypogaea HOM05D000627 ORTHO05D000365 2.9e-08 63.9 91 49.5
GSVIVG01009467001 Vitis vinifera HOM05D000627 ORTHO05D000365 2.9e-08 63.9 77 57.1
Aqoxy5G01196 Aquilegia oxysepala HOM05D000627 ORTHO05D000365 4.9e-08 63.2 77 55.8
MELO3C010843.2 Cucumis melo HOM05D000627 ORTHO05D000365 4.9e-08 63.2 113 46.0
Dinv26837 Davidia involucrata HOM05D000627 ORTHO05D000365 4.9e-08 63.2 77 57.1
Glyma.01G187600 Glycine max HOM05D000627 ORTHO05D000365 4.9e-08 63.2 100 48.0
Gohir.D05G207200 Gossypium hirsutum HOM05D000627 ORTHO05D000365 4.9e-08 63.2 116 44.0
Gorai.009G213800 Gossypium raimondii HOM05D000627 ORTHO05D000365 4.9e-08 63.2 116 44.0
Nn1g04800 Nelumbo nucifera HOM05D000627 ORTHO05D000365 4.9e-08 63.2 105 48.6
Prupe.1G432800 Prunus persica HOM05D000627 ORTHO05D000365 4.9e-08 63.2 77 55.8
Cfa004034 Carpinus fangiana HOM05D003103 ORTHO05D003999 6.4e-08 62.8 77 55.8
Haze_15379 Corylus avellana HOM05D000627 ORTHO05D000365 6.4e-08 62.8 77 55.8
Haze_18036 Corylus avellana HOM05D000627 ORTHO05D000365 6.4e-08 62.8 77 58.4
DCAR_019435 Daucus carota HOM05D000627 ORTHO05D000365 6.4e-08 62.8 77 55.8
Duzib116G0087 Durio zibethinus HOM05D000627 ORTHO05D000365 6.4e-08 62.8 81 56.8
Eucgr.I00906 Eucalyptus grandis HOM05D000627 ORTHO05D000365 6.4e-08 62.8 77 54.5
Manes.12G104100 Manihot esculenta HOM05D000627 ORTHO05D000365 6.4e-08 62.8 77 54.5
Phvul.002G017600 Phaseolus vulgaris HOM05D000627 ORTHO05D000365 6.4e-08 62.8 100 47.0
QL06p040949 Quercus lobata HOM05D000627 ORTHO05D000365 6.4e-08 62.8 77 55.8
TAR625G0514 Trochodendron aralioides HOM05D000627 ORTHO05D000365 6.4e-08 62.8 77 55.8
TAR628G1704 Trochodendron aralioides HOM05D000627 ORTHO05D000365 6.4e-08 62.8 77 57.1
CANSAT01G2532 Cannabis sativa HOM05D000627 ORTHO05D000365 8.3e-08 62.4 75 57.3
Nn5g30344 Nelumbo nucifera HOM05D000627 ORTHO05D000365 8.3e-08 62.4 75 57.3
Prupe.7G131400 Prunus persica HOM05D000627 ORTHO05D000365 8.3e-08 62.4 77 54.5
PGR004G2742 Punica granatum HOM05D000627 ORTHO05D000365 8.3e-08 62.4 77 55.8
ClCG08G016090 Citrullus lanatus HOM05D000627 ORTHO05D000365 1.1e-07 62.0 123 43.1
Glyma.17G241000 Glycine max HOM05D000627 ORTHO05D000365 1.1e-07 62.0 85 54.1
MD02G1174600 Malus domestica HOM05D000627 ORTHO05D000365 1.1e-07 62.0 77 54.5
VMungo0647G0286 Vigna mungo HOM05D000627 ORTHO05D000365 1.1e-07 62.0 103 49.5
VMungo1215G0727 Vigna mungo HOM05D000627 ORTHO05D000365 1.1e-07 62.0 100 47.0
Glyma.11G054600 Glycine max HOM05D000627 ORTHO05D000365 1.4e-07 61.6 100 47.0
MD15G1079800 Malus domestica HOM05D000627 ORTHO05D000365 1.4e-07 61.6 77 54.5
CSS0008776 Camellia sinensis var. sinensis HOM05D000627 ORTHO05D000365 1.9e-07 61.2 77 55.8
CiPaw.01G016500 Carya illinoinensis HOM05D000627 ORTHO05D000365 1.9e-07 61.2 77 54.5
CiPaw.15G054600 Carya illinoinensis HOM05D000627 ORTHO05D000365 1.9e-07 61.2 113 43.4
Dinv35940 Davidia involucrata HOM05D000627 ORTHO05D000365 1.9e-07 61.2 77 55.8
FvH4_1g16230 Fragaria vesca HOM05D000627 ORTHO05D000365 1.9e-07 61.2 118 40.7
FAN19G1420 Fragaria x ananassa HOM05D000627 ORTHO05D000365 1.9e-07 61.2 118 40.7
Glyma.14G084200 Glycine max HOM05D000627 ORTHO05D000365 1.9e-07 61.2 85 54.1
Hma1.2p1_0909F.1_g235800 Hydrangea macrophylla HOM05D000627 ORTHO05D000365 1.9e-07 61.2 77 54.5
Phvul.001G023200 Phaseolus vulgaris HOM05D000627 ORTHO05D000365 1.9e-07 61.2 103 48.5
CsaV3_2G026540 Cucumis sativus L. HOM05D000627 ORTHO05D000365 2.4e-07 60.8 77 54.5
Manes.15G162050 Manihot esculenta HOM05D000627 ORTHO05D000365 2.4e-07 60.8 82 51.2
FAN23G0049 Fragaria x ananassa HOM05D003103 ORTHO05D003999 3.2e-07 60.5 118 40.7
FAN26G2157 Fragaria x ananassa HOM05D000627 ORTHO05D000365 3.2e-07 60.5 118 40.7
Gohir.A05G204000 Gossypium hirsutum HOM05D000627 ORTHO05D000365 3.2e-07 60.5 77 55.8
Rhsim08G0099600 Rhododendron simsii HOM05D000627 ORTHO05D000365 3.2e-07 60.5 77 54.5
Sc03g0001690 Simmondsia chinensis HOM05D000627 ORTHO05D000365 3.2e-07 60.5 102 47.1
TAR381G0866 Trochodendron aralioides HOM05D000627 ORTHO05D000365 3.2e-07 60.5 77 54.5
vmacro17958 Vaccinium macrocarpon HOM05D000627 ORTHO05D000365 3.2e-07 60.5 77 54.5
AUR62001913 Chenopodium quinoa HOM05D000627 ORTHO05D000365 4.1e-07 60.1 131 41.2
Duzib264G1235 Durio zibethinus HOM05D000627 ORTHO05D000365 4.1e-07 60.1 77 54.5
TWI09G1501 Tripterygium wilfordii HOM05D000627 ORTHO05D000365 4.1e-07 60.1 77 53.2
vmacro21502 Vaccinium macrocarpon HOM05D000627 ORTHO05D000365 4.1e-07 60.1 76 55.3
HPP92_010812 Vanilla planifolia HOM05D000627 ORTHO05D000365 4.1e-07 60.1 73 56.2
Zm00001eb375660 Zea mays HOM05D000627 ORTHO05D000365 4.1e-07 60.1 77 54.5
Atru.chr3.304 Acer truncatum HOM05D000627 ORTHO05D000365 5.4e-07 59.7 115 44.3
arahy.Tifrunner.gnm1.ann1.L4P2PH Arachis hypogaea HOM05D000627 ORTHO05D000365 5.4e-07 59.7 75 56.0
arahy.Tifrunner.gnm1.ann1.VC0Q3E Arachis hypogaea HOM05D000627 ORTHO05D000365 5.4e-07 59.7 75 56.0
ClCG01G016910 Citrullus lanatus HOM05D000627 ORTHO05D000365 5.4e-07 59.7 70 57.1
Cc10_g04630 Coffea canephora HOM05D000627 ORTHO05D000365 5.4e-07 59.7 106 43.4
CsaV3_6G043370 Cucumis sativus L. HOM05D000627 ORTHO05D000365 5.4e-07 59.7 70 57.1
Duzib093G1045 Durio zibethinus HOM05D000627 ORTHO05D000365 5.4e-07 59.7 116 42.2
Nitab4.5_0002029g0050 Nicotiana tabacum HOM05D000627 ORTHO05D000365 5.4e-07 59.7 77 54.5
Sed0008725 Sechium edule HOM05D000627 ORTHO05D000365 5.4e-07 59.7 70 57.1
Hund13544 Selenicereus undatus HOM05D000627 ORTHO05D000365 5.4e-07 59.7 80 55.0
Solyc02g093280.2 Solanum lycopersicum HOM05D000627 ORTHO05D000365 5.4e-07 59.7 77 54.5
Sopen02g037840 Solanum pennellii HOM05D000627 ORTHO05D000365 5.4e-07 59.7 77 54.5
PGSC0003DMG400004011 Solanum tuberosum HOM05D000627 ORTHO05D000365 5.4e-07 59.7 77 54.5
Ah.03g145510 Amaranthus hybridus HOM05D000627 ORTHO05D000365 7.0e-07 59.3 80 53.8
EL10Ac6g15728 Beta vulgaris HOM05D000627 ORTHO05D000365 7.0e-07 59.3 131 39.7
Lj5g0008330 Lotus japonicus HOM05D000627 ORTHO05D000365 7.0e-07 59.3 84 53.6
RcHm_v2.0_Chr2g0105931 Rosa chinensis HOM05D000627 ORTHO05D000365 7.0e-07 59.3 81 50.6
Sabra14G0017700 Salix brachista HOM05D000627 ORTHO05D000365 7.0e-07 59.3 98 44.9
VMungo0251G3455 Vigna mungo HOM05D000627 ORTHO05D000365 7.0e-07 59.3 77 53.2
CARHR245580 Cardamine hirsuta HOM05D000627 ORTHO05D000365 9.2e-07 58.9 115 41.7
Migut.H00420 Erythranthe guttata HOM05D000627 ORTHO05D000365 9.2e-07 58.9 88 48.9
FAN28G2570 Fragaria x ananassa HOM05D000627 ORTHO05D000365 9.2e-07 58.9 81 50.6
HanXRQChr07g0187951 Helianthus annuus HOM05D000627 ORTHO05D000365 9.2e-07 58.9 106 45.3
Lj2g0007139 Lotus japonicus HOM05D000627 ORTHO05D000365 9.2e-07 58.9 100 45.0
Nitab4.5_0002694g0010 Nicotiana tabacum HOM05D000627 ORTHO05D000365 9.2e-07 58.9 77 54.5
Ca_24757_v3 Cicer arietinum L. HOM05D000627 ORTHO05D000365 1.2e-06 58.5 75 54.7
Psat2g166760 Pisum sativum HOM05D000627 ORTHO05D000365 1.2e-06 58.5 75 54.7
Aa31LG6G14050 Aethionema arabicum HOM05D000627 ORTHO05D000365 1.6e-06 58.2 98 44.9
ATR0800G167 Amborella trichopoda HOM05D000627 ORTHO05D000365 1.6e-06 58.2 101 45.5
CAN.G370.46 Capsicum annuum HOM05D000627 ORTHO05D000365 2.0e-06 57.8 77 54.5
BcaNung02524 Brassica carinata HOM05D000627 ORTHO05D000365 2.7e-06 57.4 70 55.7
A01p01800 Brassica napus HOM05D000627 ORTHO05D000365 2.7e-06 57.4 70 57.1
BraA01t00170Z Brassica rapa HOM05D000627 ORTHO05D000365 2.7e-06 57.4 70 57.1
MELO3C007570.2 Cucumis melo HOM05D000627 ORTHO05D000365 2.7e-06 57.4 70 55.7
Gohir.A12G072400 Gossypium hirsutum HOM05D000627 ORTHO05D000365 2.7e-06 57.4 84 48.8
Phvul.003G242900 Phaseolus vulgaris HOM05D000627 ORTHO05D000365 2.7e-06 57.4 77 53.2
Hund07268 Selenicereus undatus HOM05D000627 ORTHO05D000365 2.7e-06 57.4 78 48.7
THA.LOC104807589 Tarenaya hassleriana HOM05D000627 ORTHO05D000365 2.7e-06 57.4 70 57.1
Thhalv10025554m.g Eutrema salsugineum HOM05D000627 ORTHO05D000365 3.5e-06 57.0 115 41.7
Hund23935 Selenicereus undatus HOM05D000627 ORTHO05D000365 3.5e-06 57.0 84 48.8
AT4G36930 Arabidopsis thaliana HOM05D000627 ORTHO05D000365 4.6e-06 56.6 70 55.7
BcaB03g12354 Brassica carinata HOM05D000627 ORTHO05D000365 4.6e-06 56.6 70 55.7
A08p22570 Brassica napus HOM05D000627 ORTHO05D000365 4.6e-06 56.6 91 47.3
C01p01940 Brassica napus HOM05D000627 ORTHO05D000365 4.6e-06 56.6 70 55.7
BolC1t00188H Brassica oleracea HOM05D000627 ORTHO05D000365 4.6e-06 56.6 70 55.7
BraA08t34213Z Brassica rapa HOM05D000627 ORTHO05D000365 4.6e-06 56.6 91 47.3
ECA238G0231 Erigeron canadensis HOM05D000627 ORTHO05D000476 4.6e-06 56.6 73 53.4
Lsat_1_v5_gn_4_164941 Lactuca sativa HOM05D000627 ORTHO05D000365 4.6e-06 56.6 95 48.4
Lalb_Chr16g0378581 Lupinus albus HOM05D000627 ORTHO05D000365 4.6e-06 56.6 77 51.9
Medtr1g019240 Medicago truncatula HOM05D000627 ORTHO05D000365 4.6e-06 56.6 86 50.0
TPR.G3790 Trifolium pratense HOM05D000627 ORTHO05D000365 4.6e-06 56.6 100 46.0
BcaC01g00420 Brassica carinata HOM05D000627 ORTHO05D000365 6.0e-06 56.2 70 55.7
C03p79570 Brassica napus HOM05D000627 ORTHO05D000365 6.0e-06 56.2 70 55.7
BolC3t20207H Brassica oleracea HOM05D000627 ORTHO05D000365 6.0e-06 56.2 70 55.7
Carub.0007s0311 Capsella rubella HOM05D000627 ORTHO05D000365 6.0e-06 56.2 70 55.7
Ca_13283_v3 Cicer arietinum L. HOM05D000627 ORTHO05D000365 6.0e-06 56.2 86 47.7
Peaxi162Scf00503g00311 Petunia axillaris HOM05D000627 ORTHO05D000365 6.0e-06 56.2 124 39.5
PGSC0003DMG401007955 Solanum tuberosum HOM05D000627 ORTHO05D000365 6.0e-06 56.2 77 53.2
CAN.G1030.24 Capsicum annuum HOM05D000627 ORTHO05D000365 7.8e-06 55.8 127 38.6
Lalb_Chr09g0323261 Lupinus albus HOM05D000627 ORTHO05D000365 7.8e-06 55.8 77 51.9
Medtr5g017040 Medicago truncatula HOM05D000627 ORTHO05D000365 7.8e-06 55.8 66 57.6


User provided reference genes

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