Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC4t26017H Brassica oleracea HOM05D006674 ORTHO05D007954 2.1e-260 902.1 559 100.0
C04p44470 Brassica napus HOM05D006674 ORTHO05D007954 2.6e-258 895.2 560 99.6
A04p10750 Brassica napus HOM05D006674 ORTHO05D007954 1.4e-251 872.8 559 97.3
BraA04t16739Z Brassica rapa HOM05D006674 ORTHO05D007954 6.3e-249 864.0 559 96.8
BcaC02g09589 Brassica carinata HOM05D006674 ORTHO05D007954 1.8e-248 862.4 559 91.1
BcaB06g27104 Brassica carinata HOM05D006674 ORTHO05D007954 4.4e-226 788.1 565 84.1
Sp7g04510 Schrenkiella parvula HOM05D006674 ORTHO05D007954 7.3e-205 717.6 564 77.8
AL7G46330 Arabidopsis lyrata HOM05D006674 ORTHO05D007954 4.9e-185 651.7 557 79.5
Thhalv10027712m.g Eutrema salsugineum HOM05D006674 ORTHO05D007954 4.2e-184 648.7 568 73.4
Carub.0007s3275 Capsella rubella HOM05D006674 ORTHO05D007954 9.4e-176 620.9 565 76.6
Aa31LG9G17490 Aethionema arabicum HOM05D006674 ORTHO05D007954 6.7e-166 588.2 567 68.1
THA.LOC104805245 Tarenaya hassleriana HOM05D006674 ORTHO05D007954 9.8e-141 504.6 569 66.1
AT5G37590 Arabidopsis thaliana HOM05D006674 ORTHO05D007954 4.1e-131 472.6 560 63.9
CARHR215300 Cardamine hirsuta HOM05D006674 ORTHO05D007954 2.3e-118 430.3 308 75.3
TWI77G1007 Tripterygium wilfordii HOM05D006674 ORTHO05D007954 3.2e-115 419.9 553 54.6
Dinv28183 Davidia involucrata HOM05D006674 ORTHO05D007954 4.6e-114 416.0 567 59.8
Duzib133G1445 Durio zibethinus HOM05D006674 ORTHO05D007954 7.5e-109 398.7 508 62.0
Atru.chr1.1984 Acer truncatum HOM05D006674 ORTHO05D007954 1.3e-108 397.9 561 58.8
CSS0023224 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 2.3e-105 387.1 560 57.5
GSVIVG01030703001 Vitis vinifera HOM05D006674 ORTHO05D007954 3.9e-105 386.3 561 59.0
Thecc.04G053800 Theobroma cacao HOM05D006674 ORTHO05D007954 5.1e-105 386.0 572 57.2
Potri.004G085200 Populus trichocarpa HOM05D006674 ORTHO05D007954 1.1e-102 378.3 566 56.2
Nn4g24371 Nelumbo nucifera HOM05D006674 ORTHO05D007954 1.3e-100 371.3 532 52.1
Cc07_g13280 Coffea canephora HOM05D006674 ORTHO05D007954 1.7e-100 370.9 554 56.0
MD17G1268600 Malus domestica HOM05D006674 ORTHO05D007954 2.7e-98 363.6 535 50.5
Eucgr.F02873 Eucalyptus grandis HOM05D006674 ORTHO05D007954 3.5e-98 363.2 509 52.5
Phvul.001G229300 Phaseolus vulgaris HOM05D006674 ORTHO05D007954 1.7e-97 360.9 498 54.4
TPR.G24904 Trifolium pratense HOM05D006674 ORTHO05D007954 2.5e-96 357.1 536 52.1
Sc11g0004590 Simmondsia chinensis HOM05D006674 ORTHO05D007954 9.6e-96 355.1 565 48.7
Migut.H02229 Erythranthe guttata HOM05D006674 ORTHO05D007954 1.3e-95 354.8 541 53.8
Actinidia28801 Actinidia chinensis HOM05D006674 ORTHO05D007954 2.1e-95 354.0 571 48.5
Glyma.18G041200 Glycine max HOM05D006674 ORTHO05D007954 4.8e-95 352.8 536 51.7
Glyma.11G215400 Glycine max HOM05D006674 ORTHO05D007954 8.1e-95 352.1 531 51.4
Manes.01G119600 Manihot esculenta HOM05D006674 ORTHO05D007954 8.1e-95 352.1 471 62.2
Lalb_Chr15g0084971 Lupinus albus HOM05D006674 ORTHO05D007954 2.6e-93 347.1 509 51.1
Aqoxy5G02269 Aquilegia oxysepala HOM05D006674 ORTHO05D007954 1.7e-92 344.4 554 55.8
RcHm_v2.0_Chr3g0491391 Rosa chinensis HOM05D006674 ORTHO05D007954 2.9e-92 343.6 520 51.2
Lj6g0000042 Lotus japonicus HOM05D006674 ORTHO05D007954 8.4e-92 342.0 529 50.3
CsaV3_3G017830 Cucumis sativus L. HOM05D006674 ORTHO05D007954 2.1e-90 337.4 555 53.2
Medtr3g065220 Medicago truncatula HOM05D006674 ORTHO05D007954 2.1e-90 337.4 535 51.6
Solyc11g011390.3 Solanum lycopersicum HOM05D006674 ORTHO05D007954 2.1e-90 337.4 505 58.8
FvH4_1g30190 Fragaria vesca HOM05D006674 ORTHO05D007954 6.0e-90 335.9 563 49.4
Gohir.A07G073700 Gossypium hirsutum HOM05D006674 ORTHO05D007954 7.8e-90 335.5 574 53.5
Sabra04G0056300 Salix brachista HOM05D006674 ORTHO05D007954 7.8e-90 335.5 564 53.5
Psat5g120320 Pisum sativum HOM05D006674 ORTHO05D007954 2.3e-89 334.0 534 49.8
vmacro18526 Vaccinium macrocarpon HOM05D006674 ORTHO05D007954 6.6e-89 332.4 564 52.7
Sed0023155 Sechium edule HOM05D006674 ORTHO05D007954 1.1e-88 331.6 549 53.7
HanXRQChr09g0259811 Helianthus annuus HOM05D006674 ORTHO05D007954 2.5e-88 330.5 464 61.2
CiPaw.03G073400 Carya illinoinensis HOM05D006674 ORTHO05D007954 5.6e-88 329.3 477 59.1
arahy.Tifrunner.gnm1.ann1.M54V7M Arachis hypogaea HOM05D006674 ORTHO05D007954 2.0e-85 320.9 526 50.0
Sopen11g006190 Solanum pennellii HOM05D006674 ORTHO05D007954 8.4e-84 315.5 540 55.0
Ciclev10011395m.g Citrus clementina HOM05D006674 ORTHO05D007954 7.9e-82 308.9 553 51.4
Nitab4.5_0001650g0150 Nicotiana tabacum HOM05D006674 ORTHO05D007954 1.0e-81 308.5 569 45.9
Haze_14280 Corylus avellana HOM05D006674 ORTHO05D007954 3.0e-81 307.0 442 53.4
Lsat_1_v5_gn_1_78040 Lactuca sativa HOM05D006674 ORTHO05D007954 3.9e-81 306.6 483 51.3
ECA236G3280 Erigeron canadensis HOM05D006674 ORTHO05D007954 1.1e-78 298.5 467 49.0
Gorai.001G082800 Gossypium raimondii HOM05D006674 ORTHO05D007954 9.0e-78 295.4 574 49.7
Prupe.3G166300 Prunus persica HOM05D006674 ORTHO05D007954 9.0e-78 295.4 436 49.5
Nitab4.5_0009806g0010 Nicotiana tabacum HOM05D006674 ORTHO05D007954 2.6e-77 293.9 562 46.4
VMungo1383G3322 Vigna mungo HOM05D006674 ORTHO05D007954 2.6e-77 293.9 571 36.3
Gohir.D07G078400 Gossypium hirsutum HOM05D006674 ORTHO05D007954 1.4e-75 288.1 574 49.1
EL10Ac2g03314 Beta vulgaris HOM05D006674 ORTHO05D007954 1.3e-73 281.6 504 45.2
arahy.Tifrunner.gnm1.ann1.V27PH4 Arachis hypogaea HOM05D006674 ORTHO05D007954 1.8e-73 281.2 515 48.0
MELO3C031718.2 Cucumis melo HOM05D006674 ORTHO05D007954 3.9e-73 280.0 440 56.8
COL.COLO4_13419 Corchorus olitorius HOM05D006674 ORTHO05D007954 1.5e-72 278.1 490 48.4
FAN26G0259 Fragaria x ananassa HOM05D006674 ORTHO05D007954 2.6e-69 267.3 525 44.2
Lj4C259T11 Lonicera japonica HOM05D006674 ORTHO05D007954 6.5e-68 262.7 297 51.2
PGSC0003DMG400013236 Solanum tuberosum HOM05D006674 ORTHO05D007954 6.5e-68 262.7 479 46.3
PGR004G1202 Punica granatum HOM05D006674 ORTHO05D007954 1.1e-67 261.9 534 32.8
Rhsim08G0019400 Rhododendron simsii HOM05D006674 ORTHO05D007954 7.1e-67 259.2 347 62.5
CDE06G1904 Ceratophyllum demersum HOM05D006674 ORTHO05D007954 7.9e-66 255.8 505 45.7
DCAR_016695 Daucus carota HOM05D006674 ORTHO05D007954 2.2e-63 247.7 320 64.7
Peaxi162Scf00562g00218 Petunia axillaris HOM05D006674 ORTHO05D007954 2.5e-59 234.2 351 54.1
CAN.G222.57 Capsicum annuum HOM05D006674 ORTHO05D007954 3.2e-59 233.8 272 47.4
unitig_27.g24984 Utricularia gibba HOM05D006674 ORTHO05D007954 7.2e-59 232.6 496 42.3
SGA_v2.0_scaffold108G30962 Striga asiatica HOM05D006674 ORTHO05D007954 2.3e-57 227.6 559 39.0
ClCG05G010650 Citrullus lanatus HOM05D006674 ORTHO05D007954 1.5e-56 224.9 284 46.5
AUR62042219 Chenopodium quinoa HOM05D006674 ORTHO05D007954 2.0e-56 224.6 459 34.9
Ca_17090_v3 Cicer arietinum L. HOM05D006674 ORTHO05D007954 3.3e-56 223.8 277 45.1
ATR0753G123 Amborella trichopoda HOM05D006674 ORTHO05D007954 3.6e-50 203.8 270 45.2
PSO478G0741 Papaver somniferum HOM05D006674 ORTHO05D007954 2.2e-47 194.5 280 68.9
PSO017G4728 Papaver somniferum HOM05D006674 ORTHO05D007954 3.7e-47 193.7 280 68.9
QL02p059277 Quercus lobata HOM05D006674 ORTHO05D007954 1.0e-36 159.1 182 50.0
ClCG05G010660 Citrullus lanatus HOM05D006674 ORTHO05D007954 3.0e-33 147.5 172 51.2
Os04g0278200 Oryza sativa ssp. japonica HOM05D006674 ORTHO05D007954 3.4e-32 144.1 250 58.0
ATR0753G105 Amborella trichopoda HOM05D006674 ORTHO05D007954 2.8e-31 141.0 132 56.8
Cpa.g.sc340.5 Carica papaya HOM05D006674 ORTHO05D007954 1.1e-30 139.0 176 46.6
CSS0022976 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 1.2e-29 135.6 100 69.0
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 1.6e-29 135.2 441 28.6
Zm00001eb221050 Zea mays HOM05D006674 ORTHO05D007954 2.7e-26 124.4 163 46.0
FAN26G0614 Fragaria x ananassa HOM05D006674 ORTHO05D007954 9.8e-24 115.9 120 55.8
HPP92_002281 Vanilla planifolia HOM05D006674 ORTHO05D007954 4.9e-23 113.6 397 45.3
Pp3c16_20720 Physcomitrium patens HOM05D006674 ORTHO05D007954 2.7e-21 107.8 180 38.3
Mapoly0177s0018 Marchantia polymorpha HOM05D006674 ORTHO05D007954 1.0e-20 105.9 115 47.8
CAN.G691.5 Capsicum annuum HOM05D006674 ORTHO05D007954 1.5e-19 102.1 149 44.3
CBR_g12189 Chara braunii HOM05D000019 ORTHO05D000002 5.5e-19 100.1 68 63.2
SalBow1G3838 Salvia bowleyana HOM05D006674 ORTHO05D007954 2.1e-18 98.2 168 36.3
CAN.G222.56 Capsicum annuum HOM05D006674 ORTHO05D007954 6.1e-18 96.7 177 42.4
Hma1.2p1_1214F.1_g267580 Hydrangea macrophylla HOM05D006674 ORTHO05D007954 7.5e-16 89.7 195 35.9
arahy.Tifrunner.gnm1.ann1.UE2S4S Arachis hypogaea HOM05D006674 ORTHO05D007954 1.8e-14 85.1 123 42.3
SMO170G0006 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 1.6e-13 82.0 70 51.4
Zm00001eb221070 Zea mays HOM05D006674 ORTHO05D007954 7.8e-13 79.7 210 28.1
arahy.Tifrunner.gnm1.ann1.EIPD4W Arachis hypogaea HOM05D006674 ORTHO05D007954 1.3e-12 79.0 100 42.0
QL02p059314 Quercus lobata HOM05D006674 ORTHO05D007954 1.9e-11 75.1 166 33.1
MCO08G049 Micromonas commoda HOM05D006674 ORTHO05D007954 5.6e-11 73.6 68 50.0
CAN.G222.66 Capsicum annuum HOM05D006674 ORTHO05D007954 3.6e-10 70.9 296 25.7
Hund13087 Selenicereus undatus HOM05D006674 ORTHO05D007954 5.2e-09 67.0 146 35.6
Peaxi162Scf00562g00214 Petunia axillaris HOM05D006674 ORTHO05D007954 9.8e-08 62.8 79 46.8
Oeu058058.1 Olea europaea HOM05D013212 ORTHO05D007954 1.3e-07 62.4 72 43.1
Glyma.08G281500 Glycine max HOM05D006674 ORTHO05D007954 2.2e-07 61.6 72 44.4
CSS0039398 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 4.1e-06 57.4 48 54.2
SEGI_15610 Sequoiadendron giganteum HOM05D006674 ORTHO05D007954 7.0e-06 56.6 75 40.0


User provided reference genes

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