Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1492.2 747 100.0
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 0.0e+00 1492.2 747 100.0
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1486.5 747 99.5
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1485.3 747 99.3
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 0.0e+00 1484.2 747 99.3
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1478.0 747 98.8
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 0.0e+00 1443.7 747 96.0
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 0.0e+00 1438.3 746 95.7
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 0.0e+00 1429.1 747 95.0
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 0.0e+00 1421.0 747 94.0
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1414.1 780 91.2
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1394.8 747 92.4
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1389.4 754 92.7
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1388.6 748 92.9
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1347.0 750 88.9
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1314.7 750 86.5
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 0.0e+00 1272.7 747 83.3
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1243.8 749 81.7
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 0.0e+00 1243.0 750 82.0
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1241.9 747 81.3
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 0.0e+00 1241.5 748 81.7
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1241.1 747 81.5
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1238.8 747 81.0
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 0.0e+00 1236.1 750 81.7
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1233.0 749 81.6
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1233.0 747 80.7
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1231.9 746 81.4
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1228.8 747 80.3
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1225.3 750 80.5
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1224.2 747 80.6
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1223.8 747 81.3
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1222.2 750 80.3
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 0.0e+00 1222.2 748 80.9
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1221.5 749 80.5
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 0.0e+00 1221.1 748 80.6
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1218.0 748 79.4
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1217.6 748 79.3
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1216.8 750 80.0
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 0.0e+00 1216.4 747 79.9
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1215.7 748 80.5
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 0.0e+00 1213.7 750 79.9
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 0.0e+00 1213.4 749 80.6
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 0.0e+00 1213.0 746 79.5
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 0.0e+00 1212.2 748 80.6
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 0.0e+00 1211.8 748 80.5
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 0.0e+00 1211.8 746 79.8
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 0.0e+00 1211.8 751 80.2
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 0.0e+00 1211.4 748 80.2
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1211.4 752 79.5
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 0.0e+00 1209.5 747 79.7
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1209.1 752 79.3
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 0.0e+00 1206.8 748 80.3
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1206.8 748 79.7
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 0.0e+00 1206.8 746 78.8
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 0.0e+00 1206.0 749 80.0
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1204.1 745 79.2
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 0.0e+00 1204.1 745 79.5
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 0.0e+00 1203.7 745 79.5
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 0.0e+00 1203.7 752 79.8
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 0.0e+00 1203.0 750 79.9
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 0.0e+00 1201.8 747 79.8
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1201.8 748 79.1
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 0.0e+00 1199.9 745 79.3
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1198.7 748 79.3
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1198.3 746 79.5
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 0.0e+00 1197.2 781 76.7
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 0.0e+00 1196.4 747 79.4
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 0.0e+00 1195.6 760 78.4
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1192.2 746 79.6
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 0.0e+00 1191.4 746 78.6
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1189.9 748 78.7
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 0.0e+00 1189.5 747 78.7
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1188.3 745 79.6
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 0.0e+00 1188.3 802 74.8
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 0.0e+00 1187.2 749 78.0
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1186.0 760 79.3
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 0.0e+00 1185.6 750 78.0
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1184.9 749 78.5
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1184.1 748 78.5
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1184.1 760 79.2
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 0.0e+00 1183.3 750 78.7
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 0.0e+00 1182.9 746 79.0
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 0.0e+00 1181.8 749 79.0
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1181.4 749 77.3
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1179.9 742 78.8
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 0.0e+00 1178.7 747 77.8
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 0.0e+00 1177.9 750 78.4
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1177.2 751 77.8
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1176.8 843 71.8
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1175.6 710 80.7
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1174.8 742 77.9
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 0.0e+00 1174.5 750 77.2
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1172.9 748 78.1
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1172.5 748 77.8
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1169.5 748 77.1
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1167.1 750 78.0
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 0.0e+00 1165.2 692 81.2
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1163.7 711 79.9
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1162.1 751 77.2
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1161.4 750 76.8
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 0.0e+00 1159.8 752 76.1
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1152.5 748 77.0
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 0.0e+00 1149.0 741 76.8
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1125.9 720 77.2
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1120.9 657 82.5
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1120.9 657 82.3
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1112.4 749 73.8
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 0.0e+00 1108.2 657 81.4
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1103.6 749 74.0
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1100.1 665 81.4
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 0.0e+00 1096.6 747 73.4
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 0.0e+00 1093.2 733 74.1
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 0.0e+00 1081.6 748 74.1
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 1.1e-309 1066.2 733 72.4
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 2.9e-305 1051.6 1055 55.1
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 5.4e-304 1047.3 657 79.5
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 1.6e-295 1019.2 624 80.6
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 1.9e-288 995.7 749 68.6
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 2.3e-278 962.2 676 69.4
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 1.6e-276 956.1 676 67.3
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 1.8e-275 952.6 678 67.4
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.2e-274 949.9 677 68.1
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.2e-274 949.9 677 68.1
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 4.5e-274 948.0 677 67.9
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 7.1e-272 940.6 676 67.6
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 5.3e-251 871.3 681 62.6
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 4.2e-248 861.7 592 73.1
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 2.2e-244 849.4 592 72.6
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 2.3e-222 776.2 696 57.6
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 1.2e-221 773.9 679 56.1
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 8.3e-212 741.1 676 56.7
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 3.6e-199 699.1 676 58.6
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 5.4e-195 685.3 676 51.5
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 7.8e-170 601.7 305 96.4
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 8.7e-169 598.2 702 45.4
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 2.6e-157 560.1 323 86.7
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 2.3e-153 547.0 294 90.1
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 2.8e-151 540.0 361 73.1
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 2.2e-143 513.8 300 85.0
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 5.1e-129 466.1 301 77.4
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 1.6e-117 427.9 309 67.6
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 8.8e-105 385.6 236 77.5
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 2.0e-93 347.8 241 71.8
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 2.5e-91 340.9 219 76.7
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 3.1e-89 334.0 225 76.4
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 1.2e-85 322.0 299 59.5
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 6.0e-85 319.7 299 58.5
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 7.3e-67 259.6 172 72.1
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 1.1e-65 255.8 125 96.8
Actinidia28797 Actinidia chinensis HOM05D003263 ORTHO05D004801 9.9e-64 249.2 394 43.7
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.3e-63 248.8 175 72.6
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 4.6e-61 240.4 364 38.7
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 1.3e-58 232.3 113 96.5
MD16G1264300 Malus domestica HOM05D003263 ORTHO05D004801 1.4e-57 228.8 260 50.4
HanXRQChr17g0559491 Helianthus annuus HOM05D003263 ORTHO05D004801 1.2e-45 189.1 141 70.9
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 6.0e-45 186.8 117 77.8
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.5e-40 172.2 165 57.0
VMungo0647G1524 Vigna mungo HOM05D003263 ORTHO05D004801 1.2e-37 162.5 102 72.5
QL04p097132 Quercus lobata HOM05D003263 ORTHO05D000041 2.5e-35 154.8 86 82.6
CBR_g44347 Chara braunii HOM05D003263 ORTHO05D004801 4.8e-34 150.6 142 53.5
Sabra17G0112400 Salix brachista HOM05D003263 ORTHO05D003497 8.2e-34 149.8 122 63.9
Migut.M00197 Erythranthe guttata HOM05D003263 ORTHO05D004801 2.1e-29 135.2 124 62.9
Ca_19082_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 4.6e-29 134.0 83 77.1
Hund13091 Selenicereus undatus HOM05D003263 ORTHO05D004801 5.7e-27 127.1 105 61.0
MD16G1264400 Malus domestica HOM05D003263 ORTHO05D004801 6.3e-26 123.6 61 91.8
Cc04_g05630 Coffea canephora HOM05D003263 ORTHO05D004801 5.3e-25 120.6 140 49.3
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 1.0e-23 116.3 99 62.6
CSS0022568 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 1.3e-23 115.9 141 52.5
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 2.9e-23 114.8 222 31.1
QL08p053439 Quercus lobata HOM05D003263 ORTHO05D004801 1.1e-14 86.3 49 77.6
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 2.1e-13 82.0 56 71.4
SEGI_40032 Sequoiadendron giganteum HOM05D003263 ORTHO05D024792 1.1e-11 76.3 42 85.7
TPR.G11234 Trifolium pratense HOM05D003263 ORTHO05D004801 5.7e-11 73.9 42 83.3
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 2.2e-10 72.0 38 89.5
Psat2g105960 Pisum sativum HOM05D000610 ORTHO05D037361 7.2e-06 57.0 35 71.4


User provided reference genes

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