Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09577 Brassica carinata HOM05D006370 ORTHO05D008324 7.0e-90 334.0 171 100.0
BolC4t26007H Brassica oleracea HOM05D006370 ORTHO05D008324 7.0e-90 334.0 171 100.0
C04p44360 Brassica napus HOM05D006370 ORTHO05D008324 9.4e-87 323.6 171 97.1
A04p10640 Brassica napus HOM05D006370 ORTHO05D008324 1.2e-84 316.6 172 94.8
BcaB06g27082 Brassica carinata HOM05D006370 ORTHO05D008324 3.4e-76 288.5 173 88.4
Sp7g04690 Schrenkiella parvula HOM05D006370 ORTHO05D008324 3.5e-65 251.9 173 79.2
Thhalv10028111m.g Eutrema salsugineum HOM05D006370 ORTHO05D008324 4.3e-55 218.4 169 69.8
CARHR215460 Cardamine hirsuta HOM05D006370 ORTHO05D008324 9.5e-55 217.2 164 73.2
AT5G37480 Arabidopsis thaliana HOM05D006370 ORTHO05D008324 2.2e-51 206.1 166 69.9
Carub.0007s3265 Capsella rubella HOM05D006370 ORTHO05D008324 1.3e-48 196.8 175 65.1
Aa31LG9G17570 Aethionema arabicum HOM05D006370 ORTHO05D008324 2.5e-47 192.6 172 62.2
BcaC05g29112 Brassica carinata HOM05D006370 ORTHO05D008324 9.0e-37 157.5 112 80.4
C05p53410 Brassica napus HOM05D006370 ORTHO05D008324 1.7e-35 153.3 115 79.1
BolC5t34010H Brassica oleracea HOM05D006370 ORTHO05D008324 4.9e-35 151.8 115 79.1
BolC5t34018H Brassica oleracea HOM05D006370 ORTHO05D008324 4.9e-35 151.8 115 79.1
THA.LOC104800403 Tarenaya hassleriana HOM05D006370 ORTHO05D008324 6.4e-35 151.4 166 54.8
THA.LOC104800075 Tarenaya hassleriana HOM05D006370 ORTHO05D008324 8.4e-35 151.0 173 54.3
THA.LOC104823775 Tarenaya hassleriana HOM05D006370 ORTHO05D008324 8.4e-35 151.0 164 54.9
Cfa017718 Carpinus fangiana HOM05D006370 ORTHO05D008324 3.9e-32 142.1 170 50.6
Duzib177G0489 Durio zibethinus HOM05D006370 ORTHO05D008324 6.6e-32 141.4 166 52.4
Thecc.05G242700 Theobroma cacao HOM05D006370 ORTHO05D008324 6.6e-32 141.4 166 53.6
Gohir.A11G229500 Gossypium hirsutum HOM05D006370 ORTHO05D008324 1.1e-31 140.6 168 51.2
Gohir.D11G241500 Gossypium hirsutum HOM05D006370 ORTHO05D008324 1.9e-31 139.8 168 50.6
Duzib128G1808 Durio zibethinus HOM05D006370 ORTHO05D008324 2.1e-30 136.3 168 51.2
Gorai.007G255600 Gossypium raimondii HOM05D006370 ORTHO05D008324 2.8e-30 136.0 168 49.4
Atru.chr2.1510 Acer truncatum HOM05D006370 ORTHO05D008324 3.6e-30 135.6 179 48.0
TWI34G0169 Tripterygium wilfordii HOM05D006370 ORTHO05D008324 1.1e-29 134.0 169 49.7
COL.COLO4_28633 Corchorus olitorius HOM05D006370 ORTHO05D008324 2.4e-29 132.9 167 52.1
PGR142G0714 Punica granatum HOM05D006370 ORTHO05D008324 2.4e-29 132.9 155 48.4
CiPaw.09G166900 Carya illinoinensis HOM05D006370 ORTHO05D008324 2.0e-28 129.8 165 47.9
Nn2g14550 Nelumbo nucifera HOM05D006370 ORTHO05D008324 4.5e-28 128.6 160 46.9
PSO339G2906 Papaver somniferum HOM05D006370 ORTHO05D008324 5.8e-28 128.3 162 46.9
Hma1.2p1_0526F.1_g172840 Hydrangea macrophylla HOM05D006370 ORTHO05D008324 7.6e-28 127.9 160 48.8
TWI60G1203 Tripterygium wilfordii HOM05D006370 ORTHO05D008324 7.6e-28 127.9 159 49.1
Aqoxy1G00517 Aquilegia oxysepala HOM05D006370 ORTHO05D008324 2.2e-27 126.3 161 44.7
MD12G1010600 Malus domestica HOM05D006370 ORTHO05D008324 2.2e-27 126.3 175 47.4
TAR623G1163 Trochodendron aralioides HOM05D006370 ORTHO05D008324 8.4e-27 124.4 157 48.4
PSO063G0933 Papaver somniferum HOM05D006370 ORTHO05D008324 1.4e-26 123.6 161 44.1
Eucgr.K01528 Eucalyptus grandis HOM05D006370 ORTHO05D008324 4.2e-26 122.1 163 46.0
GSVIVG01022435001 Vitis vinifera HOM05D006370 ORTHO05D008324 5.4e-26 121.7 165 48.5
Sabra13G0056900 Salix brachista HOM05D006370 ORTHO05D008324 9.3e-26 120.9 159 49.1
MSTRG.6248 Avicennia marina HOM05D006370 ORTHO05D008324 1.2e-25 120.6 163 44.8
Ciclev10022640m.g Citrus clementina HOM05D006370 ORTHO05D008324 1.2e-25 120.6 160 49.4
FAN26G3131 Fragaria x ananassa HOM05D006370 ORTHO05D008324 1.2e-25 120.6 167 47.3
FvH4_1g28570 Fragaria vesca HOM05D006370 ORTHO05D008324 1.6e-25 120.2 167 46.7
Cpa.g.sc161.33 Carica papaya HOM05D006370 ORTHO05D008324 2.7e-25 119.4 172 50.0
Potri.013G065200 Populus trichocarpa HOM05D006370 ORTHO05D008324 3.5e-25 119.0 160 49.4
AUR62042155 Chenopodium quinoa HOM05D006370 ORTHO05D008324 4.6e-25 118.6 166 43.4
FAN19G0680 Fragaria x ananassa HOM05D006370 ORTHO05D008324 4.6e-25 118.6 185 43.2
Eucgr.K01533 Eucalyptus grandis HOM05D006370 ORTHO05D008324 6.0e-25 118.2 156 46.8
AUR62043361 Chenopodium quinoa HOM05D006370 ORTHO05D008324 1.0e-24 117.5 166 44.0
RcHm_v2.0_Chr3g0496161 Rosa chinensis HOM05D006370 ORTHO05D008324 1.0e-24 117.5 162 46.9
Sabra13G0057100 Salix brachista HOM05D006370 ORTHO05D008324 1.8e-24 116.7 159 47.8
Manes.09G136900 Manihot esculenta HOM05D006370 ORTHO05D008324 3.0e-24 115.9 161 47.8
EL10Ac5g11708 Beta vulgaris HOM05D006370 ORTHO05D008324 5.1e-24 115.2 169 42.6
FAN28G0334 Fragaria x ananassa HOM05D006370 ORTHO05D008324 5.1e-24 115.2 185 43.2
CANSAT01G3230 Cannabis sativa HOM05D006370 ORTHO05D008324 6.7e-24 114.8 175 45.7
Migut.J01529 Erythranthe guttata HOM05D006370 ORTHO05D008324 8.7e-24 114.4 160 43.8
Lj1A1073T41 Lonicera japonica HOM05D006370 ORTHO05D008324 8.7e-24 114.4 154 46.1
HanXRQChr01g0026941 Helianthus annuus HOM05D006370 ORTHO05D008324 1.1e-23 114.0 184 42.4
CDE10G0041 Ceratophyllum demersum HOM05D002702 ORTHO05D003416 1.9e-23 113.2 168 40.5
Rhsim03G0049800 Rhododendron simsii HOM05D006370 ORTHO05D008324 2.5e-23 112.8 171 43.3
CDE10G0775 Ceratophyllum demersum HOM05D006370 ORTHO05D008324 3.3e-23 112.5 169 40.2
ECA248G1067 Erigeron canadensis HOM05D006370 ORTHO05D008324 4.3e-23 112.1 166 43.4
SGA_v2.0_scaffold69G23224 Striga asiatica HOM05D006370 ORTHO05D008324 9.6e-23 110.9 168 41.7
MD14G1007700 Malus domestica HOM05D006370 ORTHO05D008324 1.3e-22 110.5 149 48.3
Cc10_g11540 Coffea canephora HOM05D006370 ORTHO05D008324 3.7e-22 109.0 171 42.7
SalBow6G1190 Salvia bowleyana HOM05D006370 ORTHO05D008324 4.8e-22 108.6 169 42.0
Lalb_Chr06g0174141 Lupinus albus HOM05D006370 ORTHO05D008324 8.1e-22 107.8 165 40.0
vmacro07654 Vaccinium macrocarpon HOM05D006370 ORTHO05D008324 4.0e-21 105.5 160 43.8
Glyma.19G010300 Glycine max HOM05D006370 ORTHO05D008324 9.0e-21 104.4 152 42.8
Os03g0748600 Oryza sativa ssp. japonica HOM05D006370 ORTHO05D008324 1.2e-20 104.0 149 42.3
Sopen10g031990 Solanum pennellii HOM05D006370 ORTHO05D008324 1.5e-20 103.6 157 40.1
Zm00001eb057190 Zea mays HOM05D006370 ORTHO05D008324 1.5e-20 103.6 156 41.0
Medtr6g027600 Medicago truncatula HOM05D006370 ORTHO05D008324 2.6e-20 102.8 164 40.9
Solyc10g081480.2 Solanum lycopersicum HOM05D006370 ORTHO05D008324 5.8e-20 101.7 158 39.9
Nitab4.5_0000613g0010 Nicotiana tabacum HOM05D006370 ORTHO05D008324 7.6e-20 101.3 157 39.5
HPP92_022911 Vanilla planifolia HOM05D006370 ORTHO05D008324 1.7e-19 100.1 164 39.6
unitig_744.g24144 Utricularia gibba HOM05D006370 ORTHO05D000703 3.8e-19 99.0 150 40.7
Prupe.7G012600 Prunus persica HOM05D006370 ORTHO05D008324 6.5e-19 98.2 85 60.0
arahy.Tifrunner.gnm1.ann1.AZ5GA5 Arachis hypogaea HOM05D006370 ORTHO05D008324 8.4e-19 97.8 160 41.9
Glyma.13G170200 Glycine max HOM05D006370 ORTHO05D008324 8.4e-19 97.8 171 39.8
PGSC0003DMG400028217 Solanum tuberosum HOM05D006370 ORTHO05D008324 1.9e-18 96.7 157 38.9
Actinidia37817 Actinidia chinensis HOM05D006370 ORTHO05D008324 2.5e-18 96.3 124 47.6
arahy.Tifrunner.gnm1.ann1.ZL000T Arachis hypogaea HOM05D006370 ORTHO05D008324 3.2e-18 95.9 160 41.2
SEGI_24903 Sequoiadendron giganteum HOM05D006370 ORTHO05D008324 4.2e-18 95.5 159 39.6
Psat1g089760 Pisum sativum HOM05D006370 ORTHO05D008324 5.5e-18 95.1 175 38.3
Haze_20411 Corylus avellana HOM05D006370 ORTHO05D008324 2.3e-16 89.7 102 52.9
Dinv05555 Davidia involucrata HOM05D006370 ORTHO05D008324 6.7e-16 88.2 99 52.5
Dinv25046 Davidia involucrata HOM05D006370 ORTHO05D008324 1.9e-15 86.7 83 57.8
Sc07g0007490 Simmondsia chinensis HOM05D006370 ORTHO05D008324 4.3e-15 85.5 133 43.6
Lsat_1_v5_gn_1_55401 Lactuca sativa HOM05D006370 ORTHO05D008324 1.6e-14 83.6 109 45.0
SGA_v2.0_scaffold66G22394 Striga asiatica HOM05D006370 ORTHO05D008324 2.1e-14 83.2 160 38.8
Aqoxy1G00515 Aquilegia oxysepala HOM05D006370 ORTHO05D008324 2.8e-14 82.8 107 44.9
Aqoxy1G00516 Aquilegia oxysepala HOM05D006370 ORTHO05D008324 1.1e-13 80.9 146 39.0
TAR633G0247 Trochodendron aralioides HOM05D001480 ORTHO05D001331 1.1e-13 80.9 75 56.0
Lj2g0006862 Lotus japonicus HOM05D006370 ORTHO05D008324 2.0e-12 76.6 90 53.3
Phvul.004G050600 Phaseolus vulgaris HOM05D006370 ORTHO05D008324 2.6e-12 76.3 111 43.2
Mapoly0066s0112 Marchantia polymorpha HOM05D006370 ORTHO05D008324 2.2e-11 73.2 99 43.4
SalBow4G2194 Salvia bowleyana HOM05D006370 ORTHO05D008324 2.9e-11 72.8 85 48.2
SalBow6G3000 Salvia bowleyana HOM05D006370 ORTHO05D008324 2.9e-11 72.8 85 48.2
VMungo0540G0157 Vigna mungo HOM05D006370 ORTHO05D008324 3.8e-11 72.4 100 46.0
SMO196G0263 Selaginella moellendorffii HOM05D006370 ORTHO05D008324 2.5e-10 69.7 162 34.0
Mapoly0007s0154 Marchantia polymorpha HOM05D006370 ORTHO05D008324 4.2e-10 68.9 172 32.0
Nitab4.5_0000387g0020 Nicotiana tabacum HOM05D006370 ORTHO05D008324 4.2e-10 68.9 112 36.6


User provided reference genes

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