Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC4t26003H Brassica oleracea HOM05D004487 ORTHO05D005483 7.2e-133 477.2 240 100.0
C04p44290 Brassica napus HOM05D004487 ORTHO05D005483 6.7e-115 417.5 240 92.1
BcaC02g09572 Brassica carinata HOM05D004487 ORTHO05D005483 6.3e-113 411.0 227 94.3
A04p10610 Brassica napus HOM05D004487 ORTHO05D005483 2.2e-110 402.5 228 92.1
BraA04t16724Z Brassica rapa HOM05D004487 ORTHO05D005483 1.1e-109 400.2 228 90.8
BcaB06g27071 Brassica carinata HOM05D004487 ORTHO05D005483 4.3e-93 345.1 232 81.9
Thhalv10027902m.g Eutrema salsugineum HOM05D004487 ORTHO05D005483 8.6e-78 294.3 247 69.6
Sp7g04740 Schrenkiella parvula HOM05D004487 ORTHO05D005483 8.6e-78 294.3 242 70.7
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 4.6e-71 271.9 248 63.3
AL7G11780 Arabidopsis lyrata HOM05D004487 ORTHO05D005483 2.3e-70 269.6 240 66.7
Carub.0007s0150 Capsella rubella HOM05D004487 ORTHO05D005483 4.3e-69 265.4 237 65.8
CARHR215520 Cardamine hirsuta HOM05D004487 ORTHO05D005483 1.2e-68 263.8 242 64.9
AT4G39630 Arabidopsis thaliana HOM05D004487 ORTHO05D005483 1.2e-60 237.3 237 59.9
CARHR247100 Cardamine hirsuta HOM05D004487 ORTHO05D005483 2.5e-53 213.0 240 56.2
Sp7g36260 Schrenkiella parvula HOM05D004487 ORTHO05D005483 5.3e-51 205.3 230 55.2
THA.LOC104807718 Tarenaya hassleriana HOM05D004487 ORTHO05D005483 3.8e-49 199.1 244 50.0
Thecc.01G110300 Theobroma cacao HOM05D004487 ORTHO05D005483 2.4e-48 196.4 245 48.6
Duzib147G1438 Durio zibethinus HOM05D004487 ORTHO05D005483 5.4e-48 195.3 239 50.2
Ciclev10026392m.g Citrus clementina HOM05D004487 ORTHO05D005483 7.1e-48 194.9 246 47.6
COL.COLO4_11036 Corchorus olitorius HOM05D004487 ORTHO05D005483 1.8e-46 190.3 236 48.7
Gohir.D11G056800 Gossypium hirsutum HOM05D004487 ORTHO05D005483 5.1e-46 188.7 245 49.4
Atru.chr3.204 Acer truncatum HOM05D004487 ORTHO05D005483 1.1e-45 187.6 215 49.8
Gorai.007G062000 Gossypium raimondii HOM05D004487 ORTHO05D005483 3.3e-45 186.0 245 49.0
Gohir.A11G053300 Gossypium hirsutum HOM05D004487 ORTHO05D005483 9.6e-45 184.5 245 48.2
TWI74G0090 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 1.6e-44 183.7 249 47.8
CiPaw.04G093900 Carya illinoinensis HOM05D004487 ORTHO05D005483 3.7e-44 182.6 249 47.4
QL06p033465 Quercus lobata HOM05D004487 ORTHO05D005483 1.8e-43 180.3 244 47.5
Potri.007G085100 Populus trichocarpa HOM05D004487 ORTHO05D005483 3.1e-43 179.5 239 51.0
Migut.H01422 Erythranthe guttata HOM05D004487 ORTHO05D005483 6.9e-43 178.3 231 47.6
Sabra07G0070400 Salix brachista HOM05D004487 ORTHO05D005483 5.8e-42 175.3 239 49.8
ClCG01G019130 Citrullus lanatus HOM05D004487 ORTHO05D005483 2.2e-41 173.3 235 47.2
Manes.12G140400 Manihot esculenta HOM05D004487 ORTHO05D005483 3.8e-41 172.6 250 46.8
MD01G1016500 Malus domestica HOM05D004487 ORTHO05D005483 1.1e-40 171.0 247 45.3
Nn8g40276 Nelumbo nucifera HOM05D004487 ORTHO05D005483 1.4e-40 170.6 212 47.2
MELO3C007790.2 Cucumis melo HOM05D004487 ORTHO05D005483 4.2e-40 169.1 238 47.5
CsaV3_6G045820 Cucumis sativus L. HOM05D004487 ORTHO05D005483 5.5e-40 168.7 238 47.1
RcHm_v2.0_Chr2g0115971 Rosa chinensis HOM05D004487 ORTHO05D005483 1.2e-39 167.5 229 46.7
Lj3g0008934 Lotus japonicus HOM05D004487 ORTHO05D005483 2.1e-39 166.8 247 46.2
Rhsim05G0180000 Rhododendron simsii HOM05D004487 ORTHO05D005483 2.1e-39 166.8 241 42.7
CANSAT01G2370 Cannabis sativa HOM05D004487 ORTHO05D005483 2.7e-39 166.4 227 45.8
vmacro21317 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 2.7e-39 166.4 236 44.1
TAR625G1215 Trochodendron aralioides HOM05D004487 ORTHO05D005483 3.5e-39 166.0 249 44.2
Haze_05964 Corylus avellana HOM05D004487 ORTHO05D005483 4.6e-39 165.6 274 41.6
Ca_25628_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 7.9e-39 164.9 246 44.7
MD15G1334800 Malus domestica HOM05D004487 ORTHO05D005483 7.9e-39 164.9 247 44.1
Prupe.8G078400 Prunus persica HOM05D004487 ORTHO05D005483 1.0e-38 164.5 221 47.1
Peaxi162Scf00171g00006 Petunia axillaris HOM05D004487 ORTHO05D005483 1.3e-38 164.1 245 44.5
Ca_23004_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 2.3e-38 163.3 247 44.5
MSTRG.14740 Avicennia marina HOM05D004487 ORTHO05D005483 3.0e-38 162.9 232 45.3
Potri.005G082500 Populus trichocarpa HOM05D004487 ORTHO05D005483 5.1e-38 162.2 235 45.5
Nn2g14563 Nelumbo nucifera HOM05D004487 ORTHO05D005483 6.7e-38 161.8 245 43.3
CsaV3_5G036000 Cucumis sativus L. HOM05D004487 ORTHO05D005483 8.7e-38 161.4 246 45.5
GSVIVG01022203001 Vitis vinifera HOM05D004487 ORTHO05D005483 8.7e-38 161.4 245 42.0
Lalb_Chr11g0075201 Lupinus albus HOM05D004487 ORTHO05D005483 1.1e-37 161.0 245 47.3
MELO3C012399.2 Cucumis melo HOM05D004487 ORTHO05D005483 2.5e-37 159.8 260 43.1
AUR62000713 Chenopodium quinoa HOM05D004487 ORTHO05D005483 3.3e-37 159.5 207 44.9
FvH4_1g21950 Fragaria vesca HOM05D004487 ORTHO05D005483 3.3e-37 159.5 228 44.7
Nitab4.5_0001495g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 5.6e-37 158.7 243 43.2
Nitab4.5_0007717g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 7.4e-37 158.3 243 43.2
Oeu040918.3 Olea europaea HOM05D004487 ORTHO05D005483 7.4e-37 158.3 293 40.3
Cc02_g15410 Coffea canephora HOM05D004487 ORTHO05D005483 9.6e-37 157.9 247 42.9
Sopen03g029710 Solanum pennellii HOM05D004487 ORTHO05D005483 9.6e-37 157.9 241 44.4
CAN.G861.28 Capsicum annuum HOM05D004487 ORTHO05D005483 1.6e-36 157.1 243 43.2
arahy.Tifrunner.gnm1.ann1.NRP8RH Arachis hypogaea HOM05D004487 ORTHO05D005483 2.8e-36 156.4 229 43.7
FAN19G1427 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.8e-36 156.4 225 44.4
FAN23G0375 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.8e-36 156.4 225 44.4
Solyc03g019910.3 Solanum lycopersicum HOM05D004487 ORTHO05D005483 2.8e-36 156.4 241 44.4
Glyma.15G199500 Glycine max HOM05D004487 ORTHO05D005483 3.7e-36 156.0 241 44.0
PGR004G1100 Punica granatum HOM05D004487 ORTHO05D005483 3.7e-36 156.0 235 43.0
ClCG05G021300 Citrullus lanatus HOM05D004487 ORTHO05D005483 4.8e-36 155.6 241 45.2
Prupe.6G176600 Prunus persica HOM05D004487 ORTHO05D005483 4.8e-36 155.6 243 41.6
vmacro18624 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 4.8e-36 155.6 242 41.3
arahy.Tifrunner.gnm1.ann1.10QJ8K Arachis hypogaea HOM05D004487 ORTHO05D005483 1.1e-35 154.5 229 43.2
PGSC0003DMG400015213 Solanum tuberosum HOM05D004487 ORTHO05D005483 1.1e-35 154.5 244 43.4
arahy.Tifrunner.gnm1.ann1.0Q3DRY Arachis hypogaea HOM05D004487 ORTHO05D005483 1.4e-35 154.1 228 43.4
EL10Ac4g09863 Beta vulgaris HOM05D004487 ORTHO05D005483 1.8e-35 153.7 223 42.6
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 2.4e-35 153.3 220 42.7
FAN28G1272 Fragaria x ananassa HOM05D004487 ORTHO05D005483 4.0e-35 152.5 218 45.0
FAN28G1914 Fragaria x ananassa HOM05D004487 ORTHO05D005483 4.0e-35 152.5 218 45.0
FvH4_1g25670 Fragaria vesca HOM05D004487 ORTHO05D005483 5.3e-35 152.1 225 44.0
arahy.Tifrunner.gnm1.ann1.Z7G166 Arachis hypogaea HOM05D004487 ORTHO05D005483 6.9e-35 151.8 228 43.9
FAN19G3081 Fragaria x ananassa HOM05D004487 ORTHO05D005483 6.9e-35 151.8 226 43.8
Gohir.1Z049552 Gossypium hirsutum HOM05D004487 ORTHO05D005483 9.0e-35 151.4 186 48.9
FAN26G2580 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.2e-34 151.0 226 43.4
TPR.G33715 Trifolium pratense HOM05D004487 ORTHO05D005483 2.0e-34 150.2 243 42.4
DCAR_014253 Daucus carota HOM05D004487 ORTHO05D005483 7.6e-34 148.3 230 41.3
Ah.04g161200 Amaranthus hybridus HOM05D004487 ORTHO05D005483 2.2e-33 146.7 217 40.1
ECA238G1615 Erigeron canadensis HOM05D004487 ORTHO05D005483 4.9e-33 145.6 238 42.0
HanXRQChr14g0458831 Helianthus annuus HOM05D004487 ORTHO05D005483 4.9e-33 145.6 244 41.8
Lsat_1_v5_gn_2_120680 Lactuca sativa HOM05D004487 ORTHO05D005483 1.1e-32 144.4 269 39.8
Nitab4.5_0000477g0120 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.1e-32 144.4 247 42.5
arahy.Tifrunner.gnm1.ann1.32WU9K Arachis hypogaea HOM05D004487 ORTHO05D005483 4.2e-32 142.5 202 44.6
MBI04_g31212_MAGBIO Magnolia biondii HOM05D004487 ORTHO05D005483 4.2e-32 142.5 235 40.4
Aqoxy2G03854 Aquilegia oxysepala HOM05D004487 ORTHO05D005483 5.5e-32 142.1 206 41.7
Phvul.009G211400 Phaseolus vulgaris HOM05D004487 ORTHO05D005483 7.1e-32 141.7 239 43.1
CSS0025780 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 9.3e-32 141.4 249 41.8
arahy.Tifrunner.gnm1.ann1.7417N6 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.6e-31 140.6 228 40.8
Glyma.09G092600 Glycine max HOM05D004487 ORTHO05D005483 4.6e-31 139.0 242 41.7
Eucgr.I00528 Eucalyptus grandis HOM05D004487 ORTHO05D005483 1.0e-30 137.9 254 39.8
Psat2g176760 Pisum sativum HOM05D004487 ORTHO05D005483 1.0e-30 137.9 235 40.9
TAR626G1474 Trochodendron aralioides HOM05D004487 ORTHO05D005483 1.3e-30 137.5 236 41.9
arahy.Tifrunner.gnm1.ann1.S1NDRU Arachis hypogaea HOM05D004487 ORTHO05D005483 1.8e-30 137.1 228 39.9
Sc16g0008840 Simmondsia chinensis HOM05D004487 ORTHO05D005483 5.1e-30 135.6 242 38.4
arahy.Tifrunner.gnm1.ann1.9RVJ5A Arachis hypogaea HOM05D004487 ORTHO05D005483 6.7e-30 135.2 213 40.8
SGA_v2.0_scaffold106G30591 Striga asiatica HOM05D004487 ORTHO05D005483 6.7e-30 135.2 221 43.9
unitig_22.g6757 Utricularia gibba HOM05D004487 ORTHO05D005483 8.7e-30 134.8 225 42.2
Lj2A942G27 Lonicera japonica HOM05D004487 ORTHO05D005483 7.4e-29 131.7 292 36.6
Nitab4.5_0007222g0010 Nicotiana tabacum HOM05D004487 ORTHO05D005483 2.8e-28 129.8 240 41.2
Hma1.2p1_0486F.1_g163280 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 1.4e-27 127.5 240 37.5
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 1.4e-27 127.5 240 40.0
VMungo1309G0247 Vigna mungo HOM05D004487 ORTHO05D005483 1.2e-26 124.4 234 40.2
CDE04G3174 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 4.5e-26 122.5 235 37.0
arahy.Tifrunner.gnm1.ann1.L7ETT7 Arachis hypogaea HOM05D004487 ORTHO05D005483 5.9e-26 122.1 182 41.8
arahy.Tifrunner.gnm1.ann1.Y72RXW Arachis hypogaea HOM05D004487 ORTHO05D005483 1.0e-25 121.3 226 39.4
Lj2A929T16 Lonicera japonica HOM05D004487 ORTHO05D005483 1.7e-25 120.6 240 37.1
Os08g0290400 Oryza sativa ssp. japonica HOM05D004487 ORTHO05D005483 3.8e-25 119.4 243 39.5
Sabra05G0067500 Salix brachista HOM05D004487 ORTHO05D005483 8.5e-25 118.2 231 39.8
Actinidia08329 Actinidia chinensis HOM05D004487 ORTHO05D005483 3.6e-23 112.8 233 35.2
ATR0210G008 Amborella trichopoda HOM05D004487 ORTHO05D005483 4.6e-23 112.5 247 34.8
HPP92_005242 Vanilla planifolia HOM05D004487 ORTHO05D005483 7.9e-23 111.7 193 36.3
arahy.Tifrunner.gnm1.ann1.I45DC0 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.0e-22 111.3 219 37.4
Dinv13358 Davidia involucrata HOM05D004487 ORTHO05D005483 2.3e-22 110.2 177 39.0
Zm00001eb192330 Zea mays HOM05D004487 ORTHO05D005483 2.5e-21 106.7 242 35.5
Lj4A903G12 Lonicera japonica HOM05D004487 ORTHO05D005483 2.2e-20 103.6 192 40.1
Dinv05687 Davidia involucrata HOM05D004487 ORTHO05D005483 2.8e-20 103.2 174 39.7
Actinidia33369 Actinidia chinensis HOM05D004487 ORTHO05D005483 6.3e-20 102.1 236 33.1
arahy.Tifrunner.gnm1.ann1.4M30AQ Arachis hypogaea HOM05D004487 ORTHO05D005483 6.3e-20 102.1 189 36.5
arahy.Tifrunner.gnm1.ann1.ZIF87W Arachis hypogaea HOM05D004487 ORTHO05D005483 6.9e-19 98.6 184 35.3
Sed0026038 Sechium edule HOM05D004487 ORTHO05D005483 6.9e-19 98.6 166 40.4
Lj6g0018564 Lotus japonicus HOM05D004487 ORTHO05D005483 3.4e-18 96.3 118 49.2
TWI53G0384 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 3.4e-18 96.3 245 34.3
SHI54251 Sapria himalayana HOM05D004487 ORTHO05D005483 4.5e-18 95.9 242 35.1
HanXRQChr07g0202331 Helianthus annuus HOM05D004487 ORTHO05D005483 5.9e-18 95.5 181 34.3
SEGI_02201 Sequoiadendron giganteum HOM05D004487 ORTHO05D005483 5.0e-17 92.4 205 35.1
Hma1.2p1_0375F.1_g138570 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 6.5e-17 92.0 132 43.2
FAN26G0673 Fragaria x ananassa HOM05D004487 ORTHO05D005483 6.1e-15 85.5 137 40.9
BcaNung00884 Brassica carinata HOM05D004487 ORTHO05D032747 1.0e-14 84.7 77 57.1
Psat4g139880 Pisum sativum HOM05D004487 ORTHO05D005483 8.8e-14 81.6 139 38.8
Psat4g139920 Pisum sativum HOM05D004487 ORTHO05D005483 1.1e-13 81.3 139 38.1
CDE04G3300 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 7.4e-13 78.6 175 32.6
Oeu043116.1 Olea europaea HOM05D004487 ORTHO05D005483 2.4e-11 73.6 160 34.4
CSS0002847 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 3.4e-10 69.7 96 46.9
Lalb_Chr12g0203581 Lupinus albus HOM05D004487 ORTHO05D005483 5.9e-10 68.9 109 41.3
BraA01t00060Z Brassica rapa HOM05D004487 ORTHO05D032747 1.0e-09 68.2 104 46.2
arahy.Tifrunner.gnm1.ann1.3C43J1 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.9e-09 66.6 85 42.4
CDE06G2627 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 3.8e-09 66.2 189 31.7
arahy.Tifrunner.gnm1.ann1.PFH739 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.4e-08 64.3 97 38.1
CSS0015836 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.4e-08 64.3 74 52.7
CSS0022213 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.4e-08 64.3 74 52.7
arahy.Tifrunner.gnm1.ann1.RJV3W7 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.9e-08 63.9 85 41.2
arahy.Tifrunner.gnm1.ann1.PL6VNF Arachis hypogaea HOM05D004487 ORTHO05D005483 7.2e-08 62.0 87 36.8
arahy.Tifrunner.gnm1.ann1.FJ4QJG Arachis hypogaea HOM05D004487 ORTHO05D005483 9.4e-08 61.6 82 42.7
ATR0730G218 Amborella trichopoda HOM05D004487 ORTHO05D005483 2.1e-07 60.5 105 39.0
arahy.Tifrunner.gnm1.ann1.94164M Arachis hypogaea HOM05D004487 ORTHO05D005483 4.7e-07 59.3 82 41.5
SGA_v2.0_scaffold83G26423 Striga asiatica HOM05D004487 ORTHO05D005483 1.4e-06 57.8 55 52.7


User provided reference genes

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