Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC4t24857H Brassica oleracea HOM05D005323 ORTHO05D033416 1.7e-38 162.2 78 100.0
C04p32940 Brassica napus HOM05D005323 ORTHO05D033416 4.8e-38 160.6 78 98.7
Eucgr.L00018 Eucalyptus grandis HOM05D005323 ORTHO05D006820 3.7e-22 107.8 104 54.8
Lj6C229G10 Lonicera japonica HOM05D005323 ORTHO05D006820 5.9e-20 100.5 104 50.0
Sp4g25840 Schrenkiella parvula HOM05D005323 ORTHO05D006820 4.0e-16 87.8 43 93.0
Thhalv10006086m.g Eutrema salsugineum HOM05D005323 ORTHO05D006820 6.8e-16 87.0 43 93.0
Sp5g03440 Schrenkiella parvula HOM05D005323 ORTHO05D006820 6.8e-16 87.0 43 93.0
BcaC02g12364 Brassica carinata HOM05D005323 ORTHO05D006820 8.9e-16 86.7 43 90.7
A05p03980 Brassica napus HOM05D005323 ORTHO05D006820 8.9e-16 86.7 43 90.7
A07p24790 Brassica napus HOM05D005323 ORTHO05D006820 8.9e-16 86.7 43 90.7
C04p04730 Brassica napus HOM05D005323 ORTHO05D006820 8.9e-16 86.7 43 90.7
BolC4t22103H Brassica oleracea HOM05D005323 ORTHO05D006820 8.9e-16 86.7 43 90.7
BraA05t19386Z Brassica rapa HOM05D005323 ORTHO05D006820 8.9e-16 86.7 43 90.7
BraA07t30124Z Brassica rapa HOM05D005323 ORTHO05D006820 8.9e-16 86.7 43 90.7
AT2G43770 Arabidopsis thaliana HOM05D005323 ORTHO05D006820 1.2e-15 86.3 42 92.9
BcaB02g08902 Brassica carinata HOM05D005323 ORTHO05D006820 1.2e-15 86.3 42 92.9
Carub.0004s2630 Capsella rubella HOM05D005323 ORTHO05D006820 1.2e-15 86.3 42 92.9
CARHR138940 Cardamine hirsuta HOM05D005323 ORTHO05D006820 1.2e-15 86.3 42 92.9
AL4G42640 Arabidopsis lyrata HOM05D005323 ORTHO05D006820 1.5e-15 85.9 42 90.5
BcaB02g07449 Brassica carinata HOM05D005323 ORTHO05D006820 1.5e-15 85.9 43 88.4
BcaC08g45003 Brassica carinata HOM05D005323 ORTHO05D006820 1.5e-15 85.9 43 90.7
C06p26380 Brassica napus HOM05D005323 ORTHO05D006820 1.5e-15 85.9 43 90.7
CANSAT56G3038 Cannabis sativa HOM05D005323 ORTHO05D006820 2.0e-15 85.5 42 92.9
Cc11_g02260 Coffea canephora HOM05D005323 ORTHO05D006820 2.0e-15 85.5 42 92.9
MELO3C011851.2 Cucumis melo HOM05D005323 ORTHO05D006820 2.0e-15 85.5 42 92.9
CsaV3_5G030120 Cucumis sativus L. HOM05D005323 ORTHO05D006820 2.0e-15 85.5 42 92.9
Sed0013916 Sechium edule HOM05D005323 ORTHO05D006820 2.0e-15 85.5 42 92.9
THA.LOC104804129 Tarenaya hassleriana HOM05D005323 ORTHO05D006820 2.0e-15 85.5 42 92.9
TWI15G0703 Tripterygium wilfordii HOM05D005323 ORTHO05D006820 2.0e-15 85.5 42 92.9
TWI63G1046 Tripterygium wilfordii HOM05D005323 ORTHO05D006820 2.0e-15 85.5 42 92.9
Atru.chr4.1467 Acer truncatum HOM05D005323 ORTHO05D006820 2.6e-15 85.1 42 90.5
Atru.chr4.1493 Acer truncatum HOM05D005323 ORTHO05D006820 2.6e-15 85.1 42 90.5
MSTRG.22040 Avicennia marina HOM05D005323 ORTHO05D006820 2.6e-15 85.1 42 92.9
Cpa.g.sc17.20 Carica papaya HOM05D005323 ORTHO05D006820 2.6e-15 85.1 42 90.5
Cfa015676 Carpinus fangiana HOM05D005323 ORTHO05D006820 2.6e-15 85.1 42 90.5
Ciclev10020927m.g Citrus clementina HOM05D005323 ORTHO05D006820 2.6e-15 85.1 42 90.5
COL.COLO4_38123 Corchorus olitorius HOM05D005323 ORTHO05D006820 2.6e-15 85.1 42 90.5
Haze_00854 Corylus avellana HOM05D005323 ORTHO05D006820 2.6e-15 85.1 42 90.5
Dinv33215 Davidia involucrata HOM05D005323 ORTHO05D006820 2.6e-15 85.1 42 90.5
Duzib151G0361 Durio zibethinus HOM05D005323 ORTHO05D006820 2.6e-15 85.1 42 90.5
Duzib212G0476 Durio zibethinus HOM05D005323 ORTHO05D006820 2.6e-15 85.1 42 90.5
Eucgr.L00010 Eucalyptus grandis HOM05D005323 ORTHO05D006820 2.6e-15 85.1 42 90.5
Gohir.A10G144900 Gossypium hirsutum HOM05D005323 ORTHO05D006820 2.6e-15 85.1 42 90.5
Gohir.D10G122100 Gossypium hirsutum HOM05D005323 ORTHO05D006820 2.6e-15 85.1 42 90.5
Gorai.011G134300 Gossypium raimondii HOM05D005323 ORTHO05D006820 2.6e-15 85.1 42 90.5
SalBow6G4087 Salvia bowleyana HOM05D005323 ORTHO05D006820 2.6e-15 85.1 42 92.9
Sc16g0006150 Simmondsia chinensis HOM05D005323 ORTHO05D006820 2.6e-15 85.1 42 90.5
Thecc.04G163800 Theobroma cacao HOM05D005323 ORTHO05D006820 2.6e-15 85.1 42 90.5
GSVIVG01038180001 Vitis vinifera HOM05D005323 ORTHO05D006820 2.6e-15 85.1 42 90.5
CSS0020323 Camellia sinensis var. sinensis HOM05D005323 ORTHO05D006820 3.4e-15 84.7 42 88.1
CiPaw.02G099700 Carya illinoinensis HOM05D005323 ORTHO05D006820 3.4e-15 84.7 42 90.5
SGA_v2.0_scaffold19G08852 Striga asiatica HOM05D005323 ORTHO05D006820 3.4e-15 84.7 44 81.8
unitig_22.g5706 Utricularia gibba HOM05D005323 ORTHO05D006820 3.4e-15 84.7 42 90.5
arahy.Tifrunner.gnm1.ann1.157ZG7 Arachis hypogaea HOM05D005323 ORTHO05D006820 4.4e-15 84.3 42 90.5
arahy.Tifrunner.gnm1.ann1.353MUE Arachis hypogaea HOM05D005323 ORTHO05D006820 4.4e-15 84.3 42 90.5
Lalb_Chr14g0364721 Lupinus albus HOM05D005323 ORTHO05D006820 4.4e-15 84.3 42 90.5
Medtr7g086360 Medicago truncatula HOM05D005323 ORTHO05D006820 4.4e-15 84.3 42 90.5
TPR.G17865 Trifolium pratense HOM05D005323 ORTHO05D006820 4.4e-15 84.3 42 90.5
Aa31LG1G25490 Aethionema arabicum HOM05D005323 ORTHO05D006820 5.7e-15 84.0 41 95.1
Manes.01G016900 Manihot esculenta HOM05D005323 ORTHO05D006820 5.7e-15 84.0 42 90.5
Nitab4.5_0000285g0060 Nicotiana tabacum HOM05D005323 ORTHO05D006820 5.7e-15 84.0 42 90.5
Nitab4.5_0002913g0040 Nicotiana tabacum HOM05D005323 ORTHO05D006820 5.7e-15 84.0 42 90.5
Oeu015708.1 Olea europaea HOM05D005323 ORTHO05D006820 5.7e-15 84.0 42 92.9
Oeu050326.1 Olea europaea HOM05D005323 ORTHO05D006820 5.7e-15 84.0 42 92.9
Peaxi162Scf00883g00035 Petunia axillaris HOM05D005323 ORTHO05D006820 5.7e-15 84.0 42 90.5
PGR042G1263 Punica granatum HOM05D005323 ORTHO05D006820 5.7e-15 84.0 42 88.1
Solyc03g059100.3 Solanum lycopersicum HOM05D005323 ORTHO05D006820 5.7e-15 84.0 42 90.5
Sopen03g013260 Solanum pennellii HOM05D005323 ORTHO05D006820 5.7e-15 84.0 42 90.5
PGSC0003DMG400026328 Solanum tuberosum HOM05D005323 ORTHO05D006820 5.7e-15 84.0 42 90.5
TAR362G1141 Trochodendron aralioides HOM05D005323 ORTHO05D006820 5.7e-15 84.0 42 88.1
Migut.N03056 Erythranthe guttata HOM05D005323 ORTHO05D006820 7.5e-15 83.6 42 90.5
Migut.O00692 Erythranthe guttata HOM05D005323 ORTHO05D006820 7.5e-15 83.6 42 90.5
PSO675G7169 Papaver somniferum HOM05D005323 ORTHO05D006820 7.5e-15 83.6 42 88.1
QL10p057057 Quercus lobata HOM05D005323 ORTHO05D006820 7.5e-15 83.6 42 88.1
SHI06205 Sapria himalayana HOM05D005323 ORTHO05D000023 7.5e-15 83.6 42 85.7
Actinidia27124 Actinidia chinensis HOM05D005323 ORTHO05D006820 1.3e-14 82.8 42 88.1
Actinidia28377 Actinidia chinensis HOM05D005323 ORTHO05D006820 1.3e-14 82.8 42 88.1
Glyma.16G037700 Glycine max HOM05D005323 ORTHO05D006820 1.3e-14 82.8 42 88.1
Glyma.19G114900 Glycine max HOM05D005323 ORTHO05D006820 1.3e-14 82.8 42 88.1
HanXRQChr01g0001231 Helianthus annuus HOM05D005323 ORTHO05D006820 1.3e-14 82.8 42 85.7
MD16G1243600 Malus domestica HOM05D005323 ORTHO05D006820 1.3e-14 82.8 42 90.5
Phvul.001G114300 Phaseolus vulgaris HOM05D005323 ORTHO05D006820 1.3e-14 82.8 42 88.1
Prupe.1G071000 Prunus persica HOM05D005323 ORTHO05D006820 1.3e-14 82.8 42 90.5
VMungo1383G1964 Vigna mungo HOM05D005323 ORTHO05D006820 1.3e-14 82.8 42 88.1
ATR0743G149 Amborella trichopoda HOM05D005323 ORTHO05D006820 1.7e-14 82.4 42 83.3
ECA240G0264 Erigeron canadensis HOM05D005323 ORTHO05D006820 1.7e-14 82.4 42 83.3
Lsat_1_v5_gn_0_9241 Lactuca sativa HOM05D005323 ORTHO05D006820 1.7e-14 82.4 42 85.7
EL10Ac4g07922 Beta vulgaris HOM05D005323 ORTHO05D006820 2.9e-14 81.6 42 88.1
Dinv18320 Davidia involucrata HOM05D005323 ORTHO05D006820 2.9e-14 81.6 42 85.7
Lj1g0017737 Lotus japonicus HOM05D005323 ORTHO05D006820 2.9e-14 81.6 42 85.7
Psat0s4033g0160 Pisum sativum HOM05D005323 ORTHO05D006820 2.9e-14 81.6 40 92.5
Potri.019G096900 Populus trichocarpa HOM05D005323 ORTHO05D006820 2.9e-14 81.6 42 83.3
Sabra19G0108600 Salix brachista HOM05D005323 ORTHO05D006820 2.9e-14 81.6 42 83.3
AUR62031624 Chenopodium quinoa HOM05D005323 ORTHO05D006820 3.7e-14 81.3 42 85.7
FvH4_4g10290 Fragaria vesca HOM05D005323 ORTHO05D006820 3.7e-14 81.3 42 85.7
FAN07G1750 Fragaria x ananassa HOM05D005323 ORTHO05D006820 3.7e-14 81.3 42 85.7
FAN12G3690 Fragaria x ananassa HOM05D005323 ORTHO05D006820 3.7e-14 81.3 42 85.7
FAN12G3871 Fragaria x ananassa HOM05D005323 ORTHO05D006820 3.7e-14 81.3 42 85.7
FAN17G0326 Fragaria x ananassa HOM05D005323 ORTHO05D006820 3.7e-14 81.3 42 85.7
FAN22G1090 Fragaria x ananassa HOM05D005323 ORTHO05D006820 3.7e-14 81.3 42 85.7
Os06g0653800 Oryza sativa ssp. japonica HOM05D005323 ORTHO05D006820 3.7e-14 81.3 42 85.7
Pp3c6_28640 Physcomitrium patens HOM05D005323 ORTHO05D006820 3.7e-14 81.3 42 85.7
Rhsim09G0008200 Rhododendron simsii HOM05D005323 ORTHO05D006820 3.7e-14 81.3 42 83.3
RcHm_v2.0_Chr4g0405641 Rosa chinensis HOM05D005323 ORTHO05D006820 3.7e-14 81.3 42 85.7
Sabra19G0107500 Salix brachista HOM05D005323 ORTHO05D006820 3.7e-14 81.3 42 81.0
Zm00001eb274960 Zea mays HOM05D005323 ORTHO05D006820 3.7e-14 81.3 42 85.7
Zm00001eb389600 Zea mays HOM05D005323 ORTHO05D006820 3.7e-14 81.3 42 85.7
DCAR_005453 Daucus carota HOM05D005323 ORTHO05D006820 4.9e-14 80.9 42 85.7
Psat6g090360 Pisum sativum HOM05D005323 ORTHO05D006820 4.9e-14 80.9 42 85.7
HPP92_017571 Vanilla planifolia HOM05D005323 ORTHO05D006820 4.9e-14 80.9 107 43.9
CBR_g4366 Chara braunii HOM05D005323 ORTHO05D006820 6.3e-14 80.5 42 85.7
Gorai.005G008900 Gossypium raimondii HOM05D005323 ORTHO05D006820 6.3e-14 80.5 42 81.0
AagrBONN_evm.TU.Sc2ySwM_228.3872 Anthoceros agrestis HOM05D005323 ORTHO05D006820 8.3e-14 80.1 42 83.3
Lj6P177T10 Lonicera japonica HOM05D005323 ORTHO05D006820 8.3e-14 80.1 42 83.3
SEGI_06199 Sequoiadendron giganteum HOM05D005323 ORTHO05D006820 1.1e-13 79.7 42 83.3
Pp3c5_3050 Physcomitrium patens HOM05D005323 ORTHO05D006820 1.4e-13 79.3 42 81.0
HPP92_028318 Vanilla planifolia HOM05D005323 ORTHO05D006820 1.4e-13 79.3 42 81.0
Aqoxy4G03253 Aquilegia oxysepala HOM05D005323 ORTHO05D006820 1.8e-13 79.0 42 81.0
Mapoly0049s0059 Marchantia polymorpha HOM05D005323 ORTHO05D006820 3.2e-13 78.2 42 83.3
AUR62020514 Chenopodium quinoa HOM05D005323 ORTHO05D006820 3.5e-12 74.7 70 54.3
DCAR_011058 Daucus carota HOM05D005323 ORTHO05D033416 1.7e-11 72.4 38 84.2
QL10p056998 Quercus lobata HOM05D005323 ORTHO05D006820 8.6e-11 70.1 42 76.2
Psat2g031000 Pisum sativum HOM05D003141 ORTHO05D003633 1.9e-10 68.9 34 88.2
MCO10G164 Micromonas commoda HOM05D005323 ORTHO05D006820 2.3e-08 62.0 44 56.8
Lj6A185T28 Lonicera japonica HOM05D005323 ORTHO05D006820 2.9e-06 55.1 36 69.4


User provided reference genes

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