Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 2419.8 1246 100.0
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 2407.5 1246 99.6
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 2357.0 1247 98.0
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 2294.6 1247 95.3
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 2293.5 1247 95.2
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 2193.3 1250 90.9
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 2100.5 1256 87.3
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 2025.8 1258 83.0
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 2004.6 1259 82.8
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 2003.0 1258 82.5
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 2002.3 1257 82.6
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 1989.9 1254 81.8
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1900.6 1185 83.6
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1843.9 1253 75.7
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1664.0 1253 69.7
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1650.2 1270 67.8
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1650.2 1270 67.2
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 1644.4 1247 68.4
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1643.6 1273 67.4
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1639.0 1273 67.1
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1639.0 1249 68.7
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1638.6 1251 67.8
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1637.9 1273 67.0
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1635.9 1251 67.7
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1628.6 1247 67.9
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 1627.8 1276 66.4
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1624.4 1273 66.8
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1619.0 1277 67.0
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1618.2 1267 65.8
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1617.1 1277 66.0
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1613.2 1260 65.6
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1610.1 1243 67.6
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1605.9 1250 67.8
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 1605.5 1278 66.0
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1604.0 1275 66.4
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 1603.6 1258 66.9
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1602.0 1268 65.9
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1600.9 1275 66.0
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1597.0 1274 65.6
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 1596.6 1272 66.3
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1594.7 1257 66.6
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1593.9 1268 65.7
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1592.8 1264 66.5
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 1588.9 1281 65.7
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1583.5 1274 65.1
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1578.9 1255 66.1
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1577.0 1264 64.6
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1574.7 1347 63.0
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 1574.3 1282 64.1
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1570.1 1263 65.3
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 1568.9 1256 64.9
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 1558.5 1251 64.3
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1555.0 1241 65.0
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1554.7 1267 64.6
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1554.7 1273 65.5
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1554.3 1280 63.6
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1553.9 1245 63.9
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1550.4 1239 64.2
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1548.1 1278 63.8
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1546.6 1256 65.8
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1542.7 1276 63.4
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1541.9 1253 64.2
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 1535.4 1252 63.1
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1535.0 1317 62.6
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1534.6 1258 63.0
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1532.7 1270 63.8
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1531.2 1232 64.5
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1530.4 1264 63.4
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1529.6 1295 62.7
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 1527.7 1270 63.9
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1524.6 1261 63.3
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1518.1 1253 63.2
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1516.9 1183 66.3
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1516.5 1250 63.7
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 1510.7 1325 61.6
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 1510.7 1279 62.7
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1510.4 1334 61.4
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1510.0 1232 65.7
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1507.3 1282 62.6
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1500.7 1325 61.1
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1467.6 1253 61.6
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1466.4 1168 65.1
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 1456.4 1282 61.2
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 1441.0 1295 60.2
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1431.0 1184 62.7
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1424.5 1171 64.6
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1419.8 1265 60.1
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 1367.8 1142 62.3
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1360.5 1250 57.6
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1357.0 1234 59.0
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1349.3 1231 58.1
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1341.6 1015 68.6
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1335.5 1280 56.2
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1323.5 1265 56.8
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 1323.1 1022 66.4
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 0.0e+00 1148.7 1020 59.8
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 0.0e+00 1122.8 1242 48.7
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 0.0e+00 1085.1 957 58.6
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 0.0e+00 1083.9 883 62.1
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 0.0e+00 1081.2 1259 48.1
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 3.5e-308 1062.0 1230 49.5
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 5.5e-301 1038.1 958 60.4
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 2.0e-282 976.5 682 74.5
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 2.5e-277 959.5 885 57.6
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 2.2e-265 919.8 791 59.0
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 3.7e-265 919.1 1219 44.1
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 2.0e-263 913.3 813 59.3
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 7.2e-261 904.8 537 87.3
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 4.7e-252 875.5 600 77.2
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 1.7e-246 857.1 1211 42.6
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 5.6e-205 719.2 1319 37.1
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 3.4e-178 630.2 1110 37.2
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 2.7e-175 620.5 470 69.4
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 2.5e-173 614.0 1250 33.1
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 3.7e-164 583.6 498 63.7
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 6.3e-164 582.8 600 51.8
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 4.7e-143 513.5 670 46.3
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 4.0e-126 457.2 292 76.0
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 2.5e-120 438.0 1156 30.3
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 1.7e-116 425.2 711 41.1
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 1.9e-112 411.8 276 76.1
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 2.4e-91 341.7 245 75.1
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 4.3e-88 330.9 335 53.4
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 1.4e-86 325.9 231 73.6
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 1.5e-77 295.8 266 57.9
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 1.5e-77 295.8 266 57.9
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 3.0e-73 281.6 200 72.5
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.1e-72 279.6 248 60.5
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 3.3e-64 251.5 157 80.9
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 2.3e-49 202.2 104 91.3
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 1.7e-39 169.5 111 79.3
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 1.4e-38 166.4 117 77.8
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 3.2e-35 155.2 179 48.6
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 4.0e-33 148.3 160 52.5
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 8.8e-33 147.1 174 47.1
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 8.3e-31 140.6 160 54.4
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 1.1e-30 140.2 1179 22.7
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 1.0e-28 133.7 104 69.2
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 1.6e-21 109.8 222 35.1
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 9.5e-19 100.5 138 43.5
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 8.0e-18 97.4 122 40.2
THA.LOC104810193 Tarenaya hassleriana HOM05D004478 ORTHO05D406888 1.2e-16 93.6 120 48.3
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 1.5e-16 93.2 95 52.6
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 4.1e-14 85.1 113 43.4
Peaxi162Scf00003g02046 Petunia axillaris HOM05D004478 ORTHO05D018875 1.2e-13 83.6 114 40.4
Peaxi162Scf00003g02040 Petunia axillaris HOM05D004478 ORTHO05D018875 5.9e-13 81.3 114 40.4
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 1.6e-10 73.2 110 38.2
Haze_02651 Corylus avellana HOM05D004478 ORTHO05D018907 2.1e-10 72.8 62 66.1
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 4.0e-09 68.6 267 27.0
AUR62044220 Chenopodium quinoa HOM05D004478 ORTHO05D018907 5.2e-09 68.2 62 61.3
Psat5g194480 Pisum sativum HOM05D016864 ORTHO05D321521 2.6e-08 65.9 122 38.5
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 5.8e-08 64.7 79 45.6
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 1.7e-07 63.2 61 52.5
Potri.002G145750 Populus trichocarpa HOM05D004478 ORTHO05D018907 1.9e-06 59.7 47 66.0
AagrBONN_evm.TU.Sc2ySwM_228.35 Anthoceros agrestis HOM05D004478 ORTHO05D072883 5.4e-06 58.2 70 44.3


User provided reference genes

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