Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC4t23017H Brassica oleracea HOM05D000961 ORTHO05D000841 3.1e-134 481.9 253 100.0
C04p14330 Brassica napus HOM05D000961 ORTHO05D000841 2.1e-111 406.0 218 96.8
BcaC02g11531 Brassica carinata HOM05D000961 ORTHO05D000841 1.5e-64 250.4 136 97.8
A06p37070 Brassica napus HOM05D000961 ORTHO05D000841 8.8e-57 224.6 165 76.4
BraA06t26632Z Brassica rapa HOM05D000961 ORTHO05D000841 9.1e-54 214.5 180 70.0
BcaNung03669 Brassica carinata HOM05D000961 ORTHO05D000841 4.5e-53 212.2 161 75.8
C07p41370 Brassica napus HOM05D000961 ORTHO05D000841 1.1e-51 207.6 161 75.2
BolC7t44667H Brassica oleracea HOM05D000961 ORTHO05D000841 4.4e-48 195.7 181 65.7
Thhalv10003593m.g Eutrema salsugineum HOM05D000961 ORTHO05D000841 5.7e-48 195.3 178 67.4
Carub.0006s2451 Capsella rubella HOM05D000961 ORTHO05D000841 2.8e-47 193.0 178 67.4
Sp2g21150 Schrenkiella parvula HOM05D000961 ORTHO05D000841 6.3e-47 191.8 178 66.3
BcaB04g19709 Brassica carinata HOM05D000961 ORTHO05D000841 1.1e-46 191.0 178 66.9
AL6G38720 Arabidopsis lyrata HOM05D000961 ORTHO05D000841 2.4e-46 189.9 178 66.3
AT5G26850 Arabidopsis thaliana HOM05D000961 ORTHO05D000841 2.4e-46 189.9 178 66.3
C09p06240 Brassica napus HOM05D000961 ORTHO05D000841 1.2e-45 187.6 178 65.7
BolC9t53544H Brassica oleracea HOM05D000961 ORTHO05D000841 1.2e-45 187.6 178 65.7
A09p05630 Brassica napus HOM05D000961 ORTHO05D000841 2.7e-45 186.4 178 65.2
BraA09t36205Z Brassica rapa HOM05D000961 ORTHO05D000841 2.7e-45 186.4 178 65.2
CARHR186680 Cardamine hirsuta HOM05D000961 ORTHO05D000841 7.8e-45 184.9 201 60.7
BcaC04g23672 Brassica carinata HOM05D000961 ORTHO05D000841 9.5e-43 177.9 170 64.7
Aa31LG11G9800 Aethionema arabicum HOM05D000961 ORTHO05D000841 8.0e-42 174.9 196 57.7
THA.LOC104818746 Tarenaya hassleriana HOM05D000961 ORTHO05D000841 1.2e-37 161.0 182 55.5
Atru.chr2.200 Acer truncatum HOM05D000961 ORTHO05D000841 1.0e-28 131.3 180 49.4
Cpa.g.sc48.164 Carica papaya HOM05D000961 ORTHO05D000841 1.6e-26 124.0 179 46.4
Duzib128G0898 Durio zibethinus HOM05D000961 ORTHO05D000841 1.1e-25 121.3 131 55.7
Thecc.05G323300 Theobroma cacao HOM05D000961 ORTHO05D000841 1.1e-25 121.3 132 56.1
MD12G1205600 Malus domestica HOM05D000961 ORTHO05D000841 2.3e-25 120.2 181 46.4
Gohir.A11G273600 Gossypium hirsutum HOM05D000961 ORTHO05D000841 5.2e-25 119.0 132 56.1
Dinv30896 Davidia involucrata HOM05D000961 ORTHO05D000841 6.8e-25 118.6 127 57.5
Gorai.013G129500 Gossypium raimondii HOM05D000961 ORTHO05D000841 1.5e-24 117.5 133 53.4
COL.COLO4_05549 Corchorus olitorius HOM05D000961 ORTHO05D000841 2.6e-24 116.7 131 55.0
Gohir.A13G112200 Gossypium hirsutum HOM05D000961 ORTHO05D000841 5.8e-24 115.5 133 52.6
Gohir.D11G283700 Gossypium hirsutum HOM05D000961 ORTHO05D000841 9.9e-24 114.8 132 55.3
Gorai.007G306600 Gossypium raimondii HOM05D000961 ORTHO05D000841 9.9e-24 114.8 132 55.3
Actinidia01503 Actinidia chinensis HOM05D000961 ORTHO05D000841 1.7e-23 114.0 129 50.4
Potri.013G008500 Populus trichocarpa HOM05D000961 ORTHO05D000841 1.7e-23 114.0 128 55.5
Prupe.6G312700 Prunus persica HOM05D000961 ORTHO05D000841 1.7e-23 114.0 179 45.3
Ciclev10000144m.g Citrus clementina HOM05D000961 ORTHO05D000841 6.4e-23 112.1 187 43.9
GSVIVG01031243001 Vitis vinifera HOM05D000961 ORTHO05D000841 6.4e-23 112.1 130 53.8
Lj5C332T3 Lonicera japonica HOM05D000961 ORTHO05D000841 8.3e-23 111.7 131 53.4
CANSAT54G2390 Cannabis sativa HOM05D000961 ORTHO05D000841 1.1e-22 111.3 128 53.1
Dinv24447 Davidia involucrata HOM05D000961 ORTHO05D000841 1.1e-22 111.3 164 48.2
MD04G1215200 Malus domestica HOM05D000961 ORTHO05D000841 7.1e-22 108.6 180 44.4
CiPaw.07G029900 Carya illinoinensis HOM05D000961 ORTHO05D000841 7.8e-21 105.1 158 45.6
Rhsim05G0127100 Rhododendron simsii HOM05D000961 ORTHO05D000841 1.3e-20 104.4 128 51.6
arahy.Tifrunner.gnm1.ann1.861X9K Arachis hypogaea HOM05D000961 ORTHO05D000841 2.3e-20 103.6 159 45.3
arahy.Tifrunner.gnm1.ann1.Q6JGBF Arachis hypogaea HOM05D000961 ORTHO05D000841 2.3e-20 103.6 159 45.3
Sed0023483 Sechium edule HOM05D000961 ORTHO05D000841 3.0e-20 103.2 181 40.9
RcHm_v2.0_Chr3g0457131 Rosa chinensis HOM05D000961 ORTHO05D000841 3.9e-20 102.8 127 49.6
TPR.G2636 Trifolium pratense HOM05D000961 ORTHO05D000841 5.1e-20 102.4 130 49.2
FAN02G3224 Fragaria x ananassa HOM05D000961 ORTHO05D000841 6.6e-20 102.1 127 51.2
Manes.09G177000 Manihot esculenta HOM05D000961 ORTHO05D000841 6.6e-20 102.1 133 49.6
Psat0s3278g0080 Pisum sativum HOM05D000961 ORTHO05D000841 6.6e-20 102.1 157 43.3
QL03p008646 Quercus lobata HOM05D000961 ORTHO05D000841 6.6e-20 102.1 131 48.1
QL03p013767 Quercus lobata HOM05D000961 ORTHO05D000841 8.6e-20 101.7 131 48.1
Haze_04059 Corylus avellana HOM05D000961 ORTHO05D000841 1.1e-19 101.3 131 48.9
ClCG02G014880 Citrullus lanatus HOM05D000961 ORTHO05D000841 1.9e-19 100.5 124 52.4
FAN09G2576 Fragaria x ananassa HOM05D000961 ORTHO05D000841 2.5e-19 100.1 127 50.4
CiPaw.08G155300 Carya illinoinensis HOM05D000961 ORTHO05D000841 3.3e-19 99.8 126 51.6
FAN05G2064 Fragaria x ananassa HOM05D000961 ORTHO05D000841 3.3e-19 99.8 127 51.2
Cc02_g35060 Coffea canephora HOM05D000961 ORTHO05D000841 4.3e-19 99.4 151 43.0
FvH4_6g07470 Fragaria vesca HOM05D000961 ORTHO05D000841 4.3e-19 99.4 176 41.5
FAN14G0354 Fragaria x ananassa HOM05D000961 ORTHO05D000841 4.3e-19 99.4 124 51.6
Medtr1g084090 Medicago truncatula HOM05D000961 ORTHO05D000841 4.3e-19 99.4 131 48.1
TAR633G1496 Trochodendron aralioides HOM05D000961 ORTHO05D000841 5.6e-19 99.0 126 50.8
MBI19_g34870_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 7.3e-19 98.6 183 41.5
Aqoxy5G03622 Aquilegia oxysepala HOM05D000961 ORTHO05D000841 1.2e-18 97.8 127 50.4
Ca_10174_v3 Cicer arietinum L. HOM05D000961 ORTHO05D000841 1.6e-18 97.4 118 51.7
Lalb_Chr02g0147801 Lupinus albus HOM05D000961 ORTHO05D000841 1.6e-18 97.4 132 50.0
VMungo0720G1251 Vigna mungo HOM05D000961 ORTHO05D000841 1.6e-18 97.4 130 48.5
Lsat_1_v5_gn_7_74900 Lactuca sativa HOM05D000961 ORTHO05D000841 2.1e-18 97.1 146 44.5
Phvul.007G201500 Phaseolus vulgaris HOM05D000961 ORTHO05D000841 2.1e-18 97.1 131 48.9
MELO3C004180.2 Cucumis melo HOM05D000961 ORTHO05D000841 2.8e-18 96.7 120 51.7
Glyma.10G146900 Glycine max HOM05D000961 ORTHO05D000841 3.6e-18 96.3 128 48.4
Hund07314 Selenicereus undatus HOM05D000961 ORTHO05D000841 4.7e-18 95.9 127 47.2
CsaV3_2G007130 Cucumis sativus L. HOM05D000961 ORTHO05D000841 1.1e-17 94.7 122 48.4
Eucgr.H03293 Eucalyptus grandis HOM05D000961 ORTHO05D000841 1.1e-17 94.7 159 42.1
Glyma.20G097001 Glycine max HOM05D000961 ORTHO05D000841 5.2e-17 92.4 128 49.2
Lj5g0012800 Lotus japonicus HOM05D000961 ORTHO05D000841 6.8e-17 92.0 131 45.8
Lalb_Chr21g0310271 Lupinus albus HOM05D000961 ORTHO05D000841 6.8e-17 92.0 133 45.1
Nn3g21707 Nelumbo nucifera HOM05D000961 ORTHO05D000841 1.2e-16 91.3 129 46.5
ECA236G3865 Erigeron canadensis HOM05D000961 ORTHO05D000841 2.6e-16 90.1 147 42.9
Glyma.06G236676 Glycine max HOM05D000961 ORTHO05D005342 3.4e-16 89.7 124 48.4
SalBow3G2732 Salvia bowleyana HOM05D000961 ORTHO05D000841 3.4e-16 89.7 128 47.7
TWI12G1045 Tripterygium wilfordii HOM05D000961 ORTHO05D000841 3.4e-16 89.7 128 46.1
Sc16g0009060 Simmondsia chinensis HOM05D000961 ORTHO05D000841 9.9e-16 88.2 129 45.0
EL10Ac4g09459 Beta vulgaris HOM05D000961 ORTHO05D000841 2.9e-15 86.7 129 45.0
Gohir.D13G115150 Gossypium hirsutum HOM05D000961 ORTHO05D000841 2.9e-15 86.7 78 60.3
HanXRQChr15g0466261 Helianthus annuus HOM05D000961 ORTHO05D000841 2.9e-15 86.7 144 40.3
Nn4g25586 Nelumbo nucifera HOM05D000961 ORTHO05D000841 2.9e-15 86.7 129 45.7
CAN.G1076.15 Capsicum annuum HOM05D000961 ORTHO05D000841 4.9e-15 85.9 151 41.1
PSO210G6526 Papaver somniferum HOM05D000961 ORTHO05D000841 4.9e-15 85.9 180 37.8
arahy.Tifrunner.gnm1.ann1.48N9T6 Arachis hypogaea HOM05D000961 ORTHO05D000841 8.4e-15 85.1 129 42.6
arahy.Tifrunner.gnm1.ann1.N1S3JP Arachis hypogaea HOM05D000961 ORTHO05D000841 8.4e-15 85.1 129 42.6
Nitab4.5_0000368g0030 Nicotiana tabacum HOM05D000961 ORTHO05D000841 8.4e-15 85.1 153 41.2
Nitab4.5_0002033g0010 Nicotiana tabacum HOM05D000961 ORTHO05D000841 8.4e-15 85.1 153 39.9
Oeu064826.1 Olea europaea HOM05D000961 ORTHO05D000841 8.4e-15 85.1 125 48.0
PGR031G2618 Punica granatum HOM05D000961 ORTHO05D000841 8.4e-15 85.1 125 44.8
MSTRG.27941 Avicennia marina HOM05D000961 ORTHO05D000841 1.4e-14 84.3 130 44.6
AUR62000389 Chenopodium quinoa HOM05D000961 ORTHO05D000841 2.4e-14 83.6 126 45.2
SGA_v2.0_scaffold5G02890 Striga asiatica HOM05D000961 ORTHO05D000841 2.4e-14 83.6 164 42.7
DCAR_025285 Daucus carota HOM05D000961 ORTHO05D000841 3.2e-14 83.2 135 44.4
Migut.N01374 Erythranthe guttata HOM05D000961 ORTHO05D000841 3.2e-14 83.2 120 45.8
Sed0012700 Sechium edule HOM05D000961 ORTHO05D000841 3.2e-14 83.2 126 44.4
AUR62006744 Chenopodium quinoa HOM05D000961 ORTHO05D000841 4.1e-14 82.8 126 44.4
Ah.06g188050 Amaranthus hybridus HOM05D000961 ORTHO05D000841 5.4e-14 82.4 155 41.3
ATR0796G155 Amborella trichopoda HOM05D000961 ORTHO05D000841 2.7e-13 80.1 131 43.5
Solyc01g100530.3 Solanum lycopersicum HOM05D000961 ORTHO05D000841 2.7e-13 80.1 146 39.0
Ah.06g188190 Amaranthus hybridus HOM05D000961 ORTHO05D000841 1.0e-12 78.2 127 46.5
Sopen01g044040 Solanum pennellii HOM05D000961 ORTHO05D000841 8.7e-12 75.1 125 40.8
Os03g0308200 Oryza sativa ssp. japonica HOM05D000961 ORTHO05D000841 1.2e-10 71.2 175 34.9
unitig_899.g15631 Utricularia gibba HOM05D000961 ORTHO05D000841 3.6e-10 69.7 126 40.5
MBI19_g40069_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 1.4e-09 67.8 135 37.8
BcaC04g23671 Brassica carinata HOM05D000961 ORTHO05D000841 4.0e-09 66.2 39 87.2
CDE01G0158 Ceratophyllum demersum HOM05D000961 ORTHO05D000841 9.0e-09 65.1 118 36.4
Zm00001eb014760 Zea mays HOM05D000961 ORTHO05D000841 9.0e-09 65.1 127 40.9
Glyma.20G097400 Glycine max HOM05D000961 ORTHO05D000841 1.2e-08 64.7 50 68.0
CDE12G0272 Ceratophyllum demersum HOM05D000961 ORTHO05D000841 7.6e-08 62.0 117 38.5
HPP92_005413 Vanilla planifolia HOM05D000961 ORTHO05D000841 1.3e-07 61.2 77 49.4
CAN.G676.55 Capsicum annuum HOM05D000961 ORTHO05D000841 1.4e-06 57.8 181 29.8
Duzib093G0288 Durio zibethinus HOM05D000961 ORTHO05D000841 1.4e-06 57.8 184 31.0
CANSAT80G0959 Cannabis sativa HOM05D000961 ORTHO05D000841 3.2e-06 56.6 168 32.7
Nitab4.5_0009344g0020 Nicotiana tabacum HOM05D000961 ORTHO05D000841 7.1e-06 55.5 172 29.7
Mapoly0063s0062 Marchantia polymorpha HOM05D000961 ORTHO05D000841 9.3e-06 55.1 186 29.6


User provided reference genes

Program Settings