Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC4t23005H Brassica oleracea HOM05D005267 ORTHO05D006303 6.9e-104 380.6 181 100.0
C04p14160 Brassica napus HOM05D005267 ORTHO05D006303 3.5e-63 245.4 118 98.3
BraA09t40549Z Brassica rapa HOM05D005267 ORTHO05D006303 1.1e-53 213.8 134 79.9
Sp5g04410 Schrenkiella parvula HOM05D005267 ORTHO05D006303 4.2e-53 211.8 133 78.2
AL5G40230 Arabidopsis lyrata HOM05D005267 ORTHO05D006303 3.6e-52 208.8 136 74.3
BcaC07g40203 Brassica carinata HOM05D005267 ORTHO05D006303 6.1e-52 208.0 131 76.3
CARHR168860 Cardamine hirsuta HOM05D005267 ORTHO05D006303 8.0e-52 207.6 136 74.3
AT3G58470 Arabidopsis thaliana HOM05D005267 ORTHO05D006303 1.8e-51 206.5 136 74.3
Thhalv10006199m.g Eutrema salsugineum HOM05D005267 ORTHO05D006303 3.0e-51 205.7 133 76.7
Carub.0005s2521 Capsella rubella HOM05D005267 ORTHO05D006303 8.8e-51 204.1 136 74.3
BcaC07g40256 Brassica carinata HOM05D005267 ORTHO05D006303 4.1e-48 195.3 125 78.4
Aa31LG10G13030 Aethionema arabicum HOM05D006729 ORTHO05D008502 3.3e-45 185.7 123 73.2
THA.LOC104821240 Tarenaya hassleriana HOM05D005267 ORTHO05D006303 1.2e-44 183.7 136 66.2
A09p51030 Brassica napus HOM05D006729 ORTHO05D008502 2.8e-44 182.6 118 78.0
C08p33850 Brassica napus HOM05D006729 ORTHO05D008502 8.0e-44 181.0 118 78.0
BolC8t50983H Brassica oleracea HOM05D006729 ORTHO05D008502 8.0e-44 181.0 118 78.0
Cpa.g.sc85.6 Carica papaya HOM05D005267 ORTHO05D006303 2.8e-41 172.6 134 63.4
COL.COLO4_29458 Corchorus olitorius HOM05D005267 ORTHO05D006303 2.8e-41 172.6 137 60.6
GSVIVG01022470001 Vitis vinifera HOM05D005267 ORTHO05D006303 2.8e-41 172.6 134 57.5
Thecc.05G181400 Theobroma cacao HOM05D005267 ORTHO05D006303 4.9e-41 171.8 137 59.9
Psat6g110480 Pisum sativum HOM05D005267 ORTHO05D006303 6.3e-41 171.4 136 58.8
Ciclev10012610m.g Citrus clementina HOM05D005267 ORTHO05D006303 1.1e-40 170.6 137 59.9
Lj5g0006264 Lotus japonicus HOM05D005267 ORTHO05D006303 1.8e-40 169.9 136 58.8
PSO384G1433 Papaver somniferum HOM05D005267 ORTHO05D006303 1.8e-40 169.9 137 58.4
PGR142G1416 Punica granatum HOM05D005267 ORTHO05D006303 1.8e-40 169.9 137 60.6
Nitab4.5_0008653g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 2.4e-40 169.5 134 61.9
CsaV3_6G041190 Cucumis sativus L. HOM05D005267 ORTHO05D006303 4.1e-40 168.7 133 59.4
Duzib128G1921 Durio zibethinus HOM05D005267 ORTHO05D006303 9.2e-40 167.5 134 58.2
Haze_20086 Corylus avellana HOM05D005267 ORTHO05D006303 1.2e-39 167.2 137 59.1
Potri.016G063600 Populus trichocarpa HOM05D005267 ORTHO05D006303 1.2e-39 167.2 137 62.0
Atru.chr8.1242 Acer truncatum HOM05D005267 ORTHO05D006303 1.6e-39 166.8 137 60.6
Ca_18103_v3 Cicer arietinum L. HOM05D005267 ORTHO05D006303 1.6e-39 166.8 136 58.8
QL07p025833 Quercus lobata HOM05D005267 ORTHO05D006303 1.6e-39 166.8 137 58.4
TPR.G30771 Trifolium pratense HOM05D005267 ORTHO05D006303 2.7e-39 166.0 138 58.7
Cc06_g07120 Coffea canephora HOM05D005267 ORTHO05D006303 3.5e-39 165.6 137 60.6
MELO3C024594.2 Cucumis melo HOM05D005267 ORTHO05D006303 3.5e-39 165.6 133 57.9
Oeu063094.3 Olea europaea HOM05D005267 ORTHO05D006303 3.5e-39 165.6 136 60.3
Nn6g32442 Nelumbo nucifera HOM05D005267 ORTHO05D006303 5.9e-39 164.9 136 57.4
Rhsim03G0057300 Rhododendron simsii HOM05D005267 ORTHO05D006303 7.8e-39 164.5 136 60.3
CANSAT64G2985 Cannabis sativa HOM05D005267 ORTHO05D006303 1.0e-38 164.1 135 59.3
Cfa020104 Carpinus fangiana HOM05D005267 ORTHO05D006303 1.0e-38 164.1 137 57.7
ClCG01G015080 Citrullus lanatus HOM05D005267 ORTHO05D006303 1.0e-38 164.1 133 57.9
Eucgr.A02526 Eucalyptus grandis HOM05D005267 ORTHO05D006303 1.3e-38 163.7 136 57.4
Medtr1g054315 Medicago truncatula HOM05D005267 ORTHO05D006303 1.3e-38 163.7 136 58.1
TWI77G0597 Tripterygium wilfordii HOM05D005267 ORTHO05D006303 1.3e-38 163.7 133 60.9
Actinidia37788 Actinidia chinensis HOM05D005267 ORTHO05D006303 1.7e-38 163.3 134 61.2
Nitab4.5_0006454g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 2.3e-38 162.9 138 58.0
Peaxi162Scf00060g01112 Petunia axillaris HOM05D005267 ORTHO05D006303 2.3e-38 162.9 128 60.2
RcHm_v2.0_Chr3g0477741 Rosa chinensis HOM05D005267 ORTHO05D006303 2.9e-38 162.5 132 61.4
RcHm_v2.0_Chr3g0477781 Rosa chinensis HOM05D005267 ORTHO05D006303 2.9e-38 162.5 132 61.4
SGA_v2.0_scaffold41G15783 Striga asiatica HOM05D005267 ORTHO05D006303 2.9e-38 162.5 137 59.9
TAR623G0682 Trochodendron aralioides HOM05D005267 ORTHO05D006303 5.0e-38 161.8 136 58.1
arahy.Tifrunner.gnm1.ann1.H25EQ1 Arachis hypogaea HOM05D005267 ORTHO05D006303 6.6e-38 161.4 135 59.3
ECA248G0309 Erigeron canadensis HOM05D005267 ORTHO05D006303 6.6e-38 161.4 134 58.2
FAN02G1071 Fragaria x ananassa HOM05D005267 ORTHO05D006303 6.6e-38 161.4 130 59.2
HanXRQChr01g0026301 Helianthus annuus HOM05D005267 ORTHO05D006303 6.6e-38 161.4 134 59.0
Sopen10g032100 Solanum pennellii HOM05D005267 ORTHO05D006303 6.6e-38 161.4 133 56.4
arahy.Tifrunner.gnm1.ann1.3RXG3F Arachis hypogaea HOM05D005267 ORTHO05D006303 8.6e-38 161.0 137 57.7
Migut.L01860 Erythranthe guttata HOM05D005267 ORTHO05D006303 8.6e-38 161.0 137 57.7
Eucgr.A02521 Eucalyptus grandis HOM05D005267 ORTHO05D006303 8.6e-38 161.0 136 56.6
Lalb_Chr02g0153991 Lupinus albus HOM05D005267 ORTHO05D006303 8.6e-38 161.0 134 56.0
Sabra16G0066000 Salix brachista HOM05D005267 ORTHO05D006303 8.6e-38 161.0 136 59.6
CiPaw.10G022300 Carya illinoinensis HOM05D005267 ORTHO05D006303 1.5e-37 160.2 136 58.1
FvH4_6g21270 Fragaria vesca HOM05D005267 ORTHO05D006303 1.5e-37 160.2 130 58.5
Sed0012434 Sechium edule HOM05D005267 ORTHO05D006303 1.9e-37 159.8 133 56.4
Solyc10g081590.2 Solanum lycopersicum HOM05D005267 ORTHO05D006303 1.9e-37 159.8 133 56.4
PGSC0003DMG400028129 Solanum tuberosum HOM05D005267 ORTHO05D006303 1.9e-37 159.8 133 56.4
CAN.G128.157 Capsicum annuum HOM05D005267 ORTHO05D006303 2.5e-37 159.5 132 60.6
MBI05_g37655_MAGBIO Magnolia biondii HOM05D005267 ORTHO05D006303 2.5e-37 159.5 135 54.8
vmacro07530 Vaccinium macrocarpon HOM05D005267 ORTHO05D006303 2.5e-37 159.5 125 63.2
Glyma.09G103300 Glycine max HOM05D005267 ORTHO05D006303 3.3e-37 159.1 136 55.9
CSS0044429 Camellia sinensis var. sinensis HOM05D005267 ORTHO05D006303 4.3e-37 158.7 137 57.7
FAN05G1850 Fragaria x ananassa HOM05D005267 ORTHO05D006303 5.6e-37 158.3 130 58.5
Prupe.7G087000 Prunus persica HOM05D005267 ORTHO05D006303 5.6e-37 158.3 134 56.7
Zm00001eb057270 Zea mays HOM05D005267 ORTHO05D006303 5.6e-37 158.3 138 55.1
FAN14G1206 Fragaria x ananassa HOM05D005267 ORTHO05D006303 7.3e-37 157.9 130 57.7
Glyma.02G167800 Glycine max HOM05D005267 ORTHO05D006303 7.3e-37 157.9 136 55.9
Lalb_Chr21g0316191 Lupinus albus HOM05D005267 ORTHO05D006303 9.5e-37 157.5 137 52.6
Lj1A1066G52 Lonicera japonica HOM05D005267 ORTHO05D006303 1.2e-36 157.1 134 56.0
BcaC07g40255 Brassica carinata HOM05D005267 ORTHO05D006303 2.1e-36 156.4 81 91.4
Os03g0749900 Oryza sativa ssp. japonica HOM05D005267 ORTHO05D006303 4.7e-36 155.2 137 55.5
EL10Ac5g11779 Beta vulgaris HOM05D005267 ORTHO05D006303 1.0e-35 154.1 137 56.2
Lsat_1_v5_gn_1_56341 Lactuca sativa HOM05D005267 ORTHO05D006303 1.4e-35 153.7 132 55.3
AUR62036286 Chenopodium quinoa HOM05D005267 ORTHO05D006303 8.9e-35 151.0 137 54.0
Hund24299 Selenicereus undatus HOM05D005267 ORTHO05D006303 8.9e-35 151.0 126 56.3
FAN05G5707 Fragaria x ananassa HOM05D005267 ORTHO05D006303 2.0e-34 149.8 144 52.8
Hund24301 Selenicereus undatus HOM05D005267 ORTHO05D006303 2.0e-34 149.8 126 55.6
unitig_899.g15196 Utricularia gibba HOM05D005267 ORTHO05D006303 2.0e-34 149.8 134 56.7
DCAR_013470 Daucus carota HOM05D006729 ORTHO05D008502 2.6e-34 149.4 121 58.7
MD14G1048200 Malus domestica HOM05D005267 ORTHO05D006303 5.8e-34 148.3 134 55.2
Hund15032 Selenicereus undatus HOM05D005267 ORTHO05D006303 7.5e-34 147.9 129 53.5
CDE05G1441 Ceratophyllum demersum HOM05D005267 ORTHO05D006303 9.8e-34 147.5 137 51.1
Aqoxy1G00565 Aquilegia oxysepala HOM05D005267 ORTHO05D006303 1.3e-33 147.1 139 51.8
ATR0697G123 Amborella trichopoda HOM05D006729 ORTHO05D008502 2.9e-33 146.0 131 55.0
Phvul.007G264300 Phaseolus vulgaris HOM05D005267 ORTHO05D006303 4.9e-33 145.2 135 51.9
VMungo0720G2658 Vigna mungo HOM05D005267 ORTHO05D006303 8.3e-33 144.4 133 51.9
AUR62039735 Chenopodium quinoa HOM05D005267 ORTHO05D006303 7.0e-32 141.4 154 48.1
Dinv11912 Davidia involucrata HOM05D005267 ORTHO05D006303 9.2e-32 141.0 117 61.5
Pp3c20_23410 Physcomitrium patens HOM05D005267 ORTHO05D006303 2.1e-28 129.8 137 47.4
Gorai.006G146100 Gossypium raimondii HOM05D005267 ORTHO05D006303 3.6e-28 129.0 151 44.4
Gohir.A09G131300 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.8e-27 126.7 134 46.3
Mapoly0207s0006 Marchantia polymorpha HOM05D005267 ORTHO05D006303 8.9e-27 124.4 133 42.9
Zm00001eb020160 Zea mays HOM05D005267 ORTHO05D006303 7.5e-26 121.3 107 56.1
Sc01g0005180 Simmondsia chinensis HOM05D005267 ORTHO05D006303 2.2e-25 119.8 85 63.5
Zm00001eb155770 Zea mays HOM05D000737 ORTHO05D006303 4.1e-24 115.5 86 59.3
Zm00001eb307210 Zea mays HOM05D005267 ORTHO05D006303 5.4e-24 115.2 108 50.9
CBR_g551 Chara braunii HOM05D005267 ORTHO05D006303 4.4e-18 95.5 168 32.1
Gohir.D09G127600 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.7e-17 93.6 59 61.0
Gohir.D09G127100 Gossypium hirsutum HOM05D005267 ORTHO05D006303 4.9e-17 92.0 58 60.3
BolC9t56010H Brassica oleracea HOM05D008384 ORTHO05D042359 1.4e-16 90.5 64 67.2
arahy.Tifrunner.gnm1.ann1.74GVQ2 Arachis hypogaea HOM05D005267 ORTHO05D006303 9.2e-16 87.8 58 60.3
Gorai.013G089700 Gossypium raimondii HOM05D005267 ORTHO05D006303 1.2e-15 87.4 95 52.6
Manes.08G038900 Manihot esculenta HOM05D005267 ORTHO05D006303 1.2e-15 87.4 60 60.0
Gorai.011G111300 Gossypium raimondii HOM05D005267 ORTHO05D006303 1.6e-15 87.0 79 59.5
arahy.Tifrunner.gnm1.ann1.TFGA9S Arachis hypogaea HOM05D005267 ORTHO05D006303 3.5e-15 85.9 58 58.6
Rhsim03G0057000 Rhododendron simsii HOM05D005267 ORTHO05D006303 4.6e-15 85.5 58 62.1
arahy.Tifrunner.gnm1.ann1.HYSL0N Arachis hypogaea HOM05D005267 ORTHO05D006303 7.8e-15 84.7 61 55.7
Gorai.001G205400 Gossypium raimondii HOM05D005267 ORTHO05D006303 7.8e-15 84.7 79 58.2
Gohir.D12G044850 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.3e-14 83.2 78 59.0
ClCG03G011770 Citrullus lanatus HOM05D000002 ORTHO05D015610 3.0e-14 82.8 72 55.6
Glyma.03G214201 Glycine max HOM05D005267 ORTHO05D006303 3.0e-14 82.8 62 56.5
Zm00001eb334640 Zea mays HOM05D005267 ORTHO05D006303 3.0e-14 82.8 58 56.9
Gohir.D03G023232 Gossypium hirsutum HOM05D005267 ORTHO05D006303 5.1e-14 82.0 79 58.2
Gohir.A01G123000 Gossypium hirsutum HOM05D005267 ORTHO05D006303 8.6e-14 81.3 79 57.0
Gohir.A06G056200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 8.6e-14 81.3 79 57.0
Gohir.D08G106200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.5e-13 80.5 78 57.7
Gohir.D11G259301 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.5e-13 80.5 78 57.7
Zm00001eb298070 Zea mays HOM05D005267 ORTHO05D006303 5.6e-13 78.6 58 51.7
SEGI_05913 Sequoiadendron giganteum HOM05D005267 ORTHO05D006303 2.4e-11 73.2 57 47.4
AagrBONN_evm.TU.Sc2ySwM_344.4688 Anthoceros agrestis HOM05D005267 ORTHO05D006303 7.6e-10 68.2 56 46.4
VMungo0464G2161 Vigna mungo HOM05D005267 ORTHO05D006303 2.2e-09 66.6 50 52.0
Gohir.D06G067600 Gossypium hirsutum HOM05D003508 ORTHO05D006303 1.9e-08 63.5 97 42.3
arahy.Tifrunner.gnm1.ann1.4NE9EM Arachis hypogaea HOM05D005267 ORTHO05D006303 1.6e-07 60.5 34 67.6
FvH4_6g21293 Fragaria vesca HOM05D005267 ORTHO05D006303 2.1e-07 60.1 35 68.6
Cfa022098 Carpinus fangiana HOM05D005267 ORTHO05D125748 1.3e-06 57.4 64 43.8
Gohir.D06G044601 Gossypium hirsutum HOM05D003508 ORTHO05D006303 3.9e-06 55.8 34 70.6


User provided reference genes

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