Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC4t22359H Brassica oleracea HOM05D002759 ORTHO05D003290 0.0e+00 2127.8 1049 100.0
C04p07370 Brassica napus HOM05D002759 ORTHO05D003290 0.0e+00 1940.6 1074 91.8
BcaC02g11623 Brassica carinata HOM05D002759 ORTHO05D003290 0.0e+00 1936.0 1144 86.2
BolC4t22942H Brassica oleracea HOM05D002759 ORTHO05D003290 0.0e+00 1923.3 1161 84.8
BcaB02g09105 Brassica carinata HOM05D002759 ORTHO05D003290 0.0e+00 1819.3 1146 81.9
C04p12980 Brassica napus HOM05D002759 ORTHO05D003290 0.0e+00 1696.8 1151 78.0
C04p13030 Brassica napus HOM05D002759 ORTHO05D003290 0.0e+00 1568.9 971 83.1
Thhalv10029518m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 0.0e+00 1221.1 1247 57.0
AT4G22970 Arabidopsis thaliana HOM05D002759 ORTHO05D003290 1.3e-274 950.3 1302 46.3
AL7G30550 Arabidopsis lyrata HOM05D002759 ORTHO05D003290 4.2e-270 935.3 1302 45.8
Sp7g21060 Schrenkiella parvula HOM05D002759 ORTHO05D003290 3.3e-267 925.6 1313 44.9
Thhalv10024187m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 9.7e-267 924.1 1319 44.8
Carub.0007s1830 Capsella rubella HOM05D002759 ORTHO05D003290 2.4e-265 919.5 1312 44.9
A01p14240 Brassica napus HOM05D002759 ORTHO05D003290 2.2e-263 912.9 1314 43.8
BcaC09g51048 Brassica carinata HOM05D002759 ORTHO05D003290 1.4e-262 910.2 1306 43.9
C01p17510 Brassica napus HOM05D002759 ORTHO05D003290 5.5e-262 908.3 1318 43.6
BolC1t01691H Brassica oleracea HOM05D002759 ORTHO05D003290 5.5e-262 908.3 1318 43.6
C07p52320 Brassica napus HOM05D002759 ORTHO05D003290 7.4e-259 897.9 1318 43.8
BraA01t01371Z Brassica rapa HOM05D002759 ORTHO05D003290 3.7e-258 895.6 1311 43.4
BolC7t45725H Brassica oleracea HOM05D002759 ORTHO05D003290 3.1e-257 892.5 1327 43.6
THA.LOC104814230 Tarenaya hassleriana HOM05D002759 ORTHO05D003290 7.7e-256 887.9 1327 43.6
Aa31LG6G5020 Aethionema arabicum HOM05D002759 ORTHO05D003290 5.5e-254 881.7 1348 42.2
A03p53910 Brassica napus HOM05D002759 ORTHO05D003290 3.7e-250 869.0 1314 42.8
BraA03t14460Z Brassica rapa HOM05D002759 ORTHO05D003290 3.7e-250 869.0 1314 42.8
BcaNung01007 Brassica carinata HOM05D002759 ORTHO05D003290 5.9e-248 861.7 1310 41.7
Haze_21022 Corylus avellana HOM05D002759 ORTHO05D003290 1.9e-206 723.8 1323 36.9
Manes.07G013200 Manihot esculenta HOM05D002759 ORTHO05D003290 1.6e-205 720.7 1313 37.2
CARHR230010 Cardamine hirsuta HOM05D002759 ORTHO05D003290 4.7e-205 719.2 1008 45.7
Atru.chr6.1078 Acer truncatum HOM05D002759 ORTHO05D003290 2.0e-203 713.8 1297 37.0
Cfa017189 Carpinus fangiana HOM05D002759 ORTHO05D003290 2.0e-203 713.8 1323 36.6
Atru.chr6.1027 Acer truncatum HOM05D002759 ORTHO05D003290 3.5e-200 703.0 1297 36.8
Ciclev10000008m.g Citrus clementina HOM05D002759 ORTHO05D003290 6.2e-197 692.2 1329 35.9
Prupe.1G563000 Prunus persica HOM05D002759 ORTHO05D003290 3.1e-196 689.9 1330 36.1
RcHm_v2.0_Chr7g0222331 Rosa chinensis HOM05D002759 ORTHO05D003290 5.2e-196 689.1 1279 36.7
CiPaw.05G042600 Carya illinoinensis HOM05D002759 ORTHO05D003290 1.2e-195 688.0 1336 36.3
FvH4_3g35420 Fragaria vesca HOM05D002759 ORTHO05D003290 9.9e-195 684.9 1267 36.5
Duzib052G0069 Durio zibethinus HOM05D002759 ORTHO05D003290 2.9e-194 683.3 1317 35.5
QL02p098685 Quercus lobata HOM05D002759 ORTHO05D003290 2.9e-194 683.3 1406 34.4
FAN16G3014 Fragaria x ananassa HOM05D002759 ORTHO05D003290 3.8e-194 682.9 1265 36.4
GSVIVG01023021001 Vitis vinifera HOM05D002759 ORTHO05D003290 3.8e-194 682.9 1250 36.9
Potri.003G021700 Populus trichocarpa HOM05D002759 ORTHO05D003290 4.6e-192 676.0 1311 35.8
TWI59G0497 Tripterygium wilfordii HOM05D002759 ORTHO05D003290 1.0e-191 674.9 1323 35.4
FAN11G2638 Fragaria x ananassa HOM05D002759 ORTHO05D003290 2.3e-191 673.7 1285 36.0
Thecc.02G041500 Theobroma cacao HOM05D002759 ORTHO05D003290 3.9e-191 672.9 1319 35.0
Sed0002146 Sechium edule HOM05D002759 ORTHO05D003290 6.2e-189 665.6 1283 35.7
CANSAT11G0811 Cannabis sativa HOM05D002759 ORTHO05D003290 1.8e-188 664.1 1297 34.8
ClCG08G010020 Citrullus lanatus HOM05D002759 ORTHO05D003290 4.0e-188 662.9 1284 36.2
CSS0015736 Camellia sinensis var. sinensis HOM05D002759 ORTHO05D003290 4.5e-187 659.4 1242 35.9
COL.COLO4_08439 Corchorus olitorius HOM05D002759 ORTHO05D003290 1.4e-185 654.4 1301 34.8
TAR381G0620 Trochodendron aralioides HOM05D002759 ORTHO05D003290 2.4e-185 653.7 1328 34.8
Actinidia39057 Actinidia chinensis HOM05D002759 ORTHO05D003290 3.5e-184 649.8 1335 34.2
MELO3C011463.2 Cucumis melo HOM05D002759 ORTHO05D003290 6.2e-181 639.0 1293 34.3
CsaV3_6G032190 Cucumis sativus L. HOM05D002759 ORTHO05D003290 1.1e-180 638.3 1294 34.8
Gorai.002G207900 Gossypium raimondii HOM05D002759 ORTHO05D003290 1.8e-180 637.5 1281 34.7
Psat1g219920 Pisum sativum HOM05D002759 ORTHO05D003290 1.2e-179 634.8 1314 34.0
Glyma.15G048100 Glycine max HOM05D002759 ORTHO05D003290 2.6e-179 633.6 1314 34.2
Lalb_Chr20g0123401 Lupinus albus HOM05D002759 ORTHO05D003290 1.7e-178 630.9 1312 34.3
Glyma.08G184200 Glycine max HOM05D002759 ORTHO05D003290 1.1e-177 628.2 1311 34.2
Lj1g0017629 Lotus japonicus HOM05D002759 ORTHO05D003290 6.0e-176 622.5 1323 33.9
Phvul.006G212401 Phaseolus vulgaris HOM05D002759 ORTHO05D003290 6.0e-176 622.5 1302 34.2
Lj6g0007416 Lotus japonicus HOM05D002759 ORTHO05D003290 3.9e-175 619.8 1324 34.3
Nn5g28049 Nelumbo nucifera HOM05D002759 ORTHO05D003290 3.1e-172 610.1 1276 34.1
arahy.Tifrunner.gnm1.ann1.YVTC7U Arachis hypogaea HOM05D002759 ORTHO05D003290 9.0e-172 608.6 1295 34.1
TPR.G2149 Trifolium pratense HOM05D002759 ORTHO05D003290 3.4e-171 606.7 1400 32.9
Lsat_1_v5_gn_5_109460 Lactuca sativa HOM05D002759 ORTHO05D003290 4.5e-171 606.3 1247 33.7
CAN.G1352.21 Capsicum annuum HOM05D002759 ORTHO05D003290 2.9e-170 603.6 1291 33.3
Gohir.D01G167432 Gossypium hirsutum HOM05D002759 ORTHO05D003290 6.5e-170 602.4 1224 34.1
PGR042G2027 Punica granatum HOM05D002759 ORTHO05D003290 6.5e-170 602.4 1314 33.3
arahy.Tifrunner.gnm1.ann1.VDG0KY Arachis hypogaea HOM05D002759 ORTHO05D003290 5.5e-169 599.4 1296 33.8
HanXRQChr10g0290421 Helianthus annuus HOM05D002759 ORTHO05D003290 1.2e-168 598.2 1268 34.3
Medtr2g007790 Medicago truncatula HOM05D002759 ORTHO05D003290 1.2e-168 598.2 1321 33.7
PSO170G2118 Papaver somniferum HOM05D002759 ORTHO05D003290 4.6e-168 596.3 1290 34.4
PSO528G0214 Papaver somniferum HOM05D002759 ORTHO05D003290 7.9e-168 595.5 1289 34.1
Rhsim11G0131800 Rhododendron simsii HOM05D002759 ORTHO05D003290 1.3e-167 594.7 1336 33.2
Ca_00091_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 5.7e-166 589.3 1270 33.9
Ca_29930_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 5.7e-166 589.3 1270 33.9
ECA234G1843 Erigeron canadensis HOM05D002759 ORTHO05D003290 1.4e-164 584.7 1269 33.3
Sabra03G0013600 Salix brachista HOM05D002759 ORTHO05D003290 2.4e-164 583.9 1425 32.0
Peaxi162Scf00011g00138 Petunia axillaris HOM05D002759 ORTHO05D003290 3.1e-164 583.6 1196 33.9
Sopen01g046990 Solanum pennellii HOM05D002759 ORTHO05D003290 9.0e-164 582.0 1285 33.1
Medtr7g023120 Medicago truncatula HOM05D002759 ORTHO05D003290 2.6e-163 580.5 1295 33.1
Cc02_g22260 Coffea canephora HOM05D002759 ORTHO05D003290 7.6e-163 578.9 1307 32.6
Solyc01g104490.3 Solanum lycopersicum HOM05D002759 ORTHO05D003290 3.8e-162 576.6 1285 32.8
SGA_v2.0_scaffold110G31284 Striga asiatica HOM05D002759 ORTHO05D003290 1.8e-159 567.8 1213 34.0
Eucgr.G00634 Eucalyptus grandis HOM05D002759 ORTHO05D003290 3.9e-159 566.6 1243 32.8
Nitab4.5_0005539g0020 Nicotiana tabacum HOM05D002759 ORTHO05D003290 2.5e-158 563.9 1278 31.8
Sc19g0000800 Simmondsia chinensis HOM05D002759 ORTHO05D003290 1.7e-154 551.2 1167 33.1
DCAR_005626 Daucus carota HOM05D002759 ORTHO05D003290 2.9e-154 550.4 1284 32.7
SalBow5G5260 Salvia bowleyana HOM05D002759 ORTHO05D003290 5.5e-153 546.2 1205 32.5
Migut.B00666 Erythranthe guttata HOM05D002759 ORTHO05D003290 1.4e-151 541.6 1235 32.8
Nitab4.5_0004005g0050 Nicotiana tabacum HOM05D002759 ORTHO05D003290 2.3e-151 540.8 1295 31.0
RcHm_v2.0_Chr7g0177921 Rosa chinensis HOM05D002759 ORTHO05D003290 1.5e-150 538.1 1175 34.4
FAN25G1732 Fragaria x ananassa HOM05D002759 ORTHO05D003290 8.2e-149 532.3 1182 32.7
Aqoxy3G00692 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 2.0e-147 527.7 1272 32.1
Dinv24260 Davidia involucrata HOM05D002759 ORTHO05D003290 5.0e-146 523.1 1047 34.9
Gohir.A01G176651 Gossypium hirsutum HOM05D002759 ORTHO05D003290 1.0e-143 515.4 1072 33.7
Aqoxy7G02142 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 2.4e-140 504.2 1238 32.1
EL10Ac3g05252 Beta vulgaris HOM05D002759 ORTHO05D003290 2.2e-138 497.7 1335 30.3
Hund21015 Selenicereus undatus HOM05D002759 ORTHO05D003290 3.6e-136 490.3 1310 30.1
BcaB05g23798 Brassica carinata HOM05D002759 ORTHO05D003290 2.7e-131 474.2 515 53.2
AUR62035559 Chenopodium quinoa HOM05D002759 ORTHO05D003290 1.3e-125 455.3 1278 29.7
MD00G1166400 Malus domestica HOM05D002759 ORTHO05D003290 1.7e-122 444.9 984 33.3
Hund11642 Selenicereus undatus HOM05D002759 ORTHO05D003290 1.5e-121 441.8 1351 28.1
C04p13080 Brassica napus HOM05D002759 ORTHO05D003290 7.2e-121 439.5 240 91.2
MSTRG.16534 Avicennia marina HOM05D002759 ORTHO05D003290 1.8e-119 434.9 1039 31.6
arahy.Tifrunner.gnm1.ann1.JK8JKR Arachis hypogaea HOM05D002759 ORTHO05D003290 1.7e-117 428.3 996 33.0
HPP92_009112 Vanilla planifolia HOM05D002759 ORTHO05D003290 5.0e-114 416.8 1187 30.2
FAN08G3490 Fragaria x ananassa HOM05D002759 ORTHO05D003290 7.3e-113 412.9 1085 31.3
MD15G1419000 Malus domestica HOM05D002759 ORTHO05D003290 9.5e-113 412.5 834 35.0
Zm00001eb193470 Zea mays HOM05D002759 ORTHO05D003290 3.6e-112 410.6 1326 27.3
AUR62006068 Chenopodium quinoa HOM05D002759 ORTHO05D003290 2.6e-110 404.4 1268 28.1
FAN04G1156 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.7e-98 365.2 757 35.4
CDE09G0711 Ceratophyllum demersum HOM05D002759 ORTHO05D003290 8.3e-93 346.3 1181 27.8
Cpa.g.sc148.32 Carica papaya HOM05D002759 ORTHO05D003290 1.9e-89 335.1 575 39.1
Ah.07g205390 Amaranthus hybridus HOM05D002759 ORTHO05D003290 3.6e-88 330.9 1024 27.0
Os02g0770700 Oryza sativa ssp. japonica HOM05D002759 ORTHO05D003290 3.6e-88 330.9 1093 28.2
Lj9A311T56 Lonicera japonica HOM05D002759 ORTHO05D003290 2.4e-87 328.2 691 34.9
Lj9C311G18 Lonicera japonica HOM05D002759 ORTHO05D003290 1.6e-83 315.5 605 34.9
Atru.chr12.1442 Acer truncatum HOM05D002759 ORTHO05D003290 1.2e-80 305.8 1017 29.2
Cpa.g.sc148.31 Carica papaya HOM05D002759 ORTHO05D003290 4.2e-76 290.8 541 36.8
Oeu008876.1 Olea europaea HOM05D002759 ORTHO05D003290 1.5e-73 282.3 1058 26.7
CARHR254480 Cardamine hirsuta HOM05D002759 ORTHO05D003290 8.1e-72 276.6 350 49.4
ATR0661G443 Amborella trichopoda HOM05D002759 ORTHO05D003290 1.9e-68 265.4 718 30.2
BcaC02g11622 Brassica carinata HOM05D002759 ORTHO05D003290 7.1e-68 263.5 136 96.3
Oeu043988.1 Olea europaea HOM05D002759 ORTHO05D003290 7.1e-68 263.5 1068 26.2
FAN13G1302 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.6e-59 235.7 555 33.2
SMO356G0583 Selaginella moellendorffii HOM05D002759 ORTHO05D003290 5.1e-58 230.7 1190 24.4
ATR0661G182 Amborella trichopoda HOM05D002759 ORTHO05D003290 3.1e-55 221.5 443 32.7
C04p13010 Brassica napus HOM05D002759 ORTHO05D003290 2.6e-54 218.4 119 89.9
C04p13060 Brassica napus HOM05D002759 ORTHO05D003290 2.6e-54 218.4 119 89.9
AagrBONN_evm.TU.Sc2ySwM_117.1581 Anthoceros agrestis HOM05D002759 ORTHO05D003290 1.2e-51 209.5 812 26.7
CARHR230000 Cardamine hirsuta HOM05D002759 ORTHO05D003290 1.6e-51 209.1 294 43.2
FvH4_5g29930 Fragaria vesca HOM05D002759 ORTHO05D003290 3.5e-51 208.0 265 46.0
SHI26607 Sapria himalayana HOM05D002759 ORTHO05D003290 1.3e-50 206.1 552 30.8
MD15G1418900 Malus domestica HOM05D002759 ORTHO05D003290 1.3e-48 199.5 352 36.1
Mapoly0118s0005 Marchantia polymorpha HOM05D002759 ORTHO05D003290 1.6e-48 199.1 1468 21.6
Actinidia00221 Actinidia chinensis HOM05D002759 ORTHO05D003290 2.5e-44 185.3 337 36.2
Pp3c8_2900 Physcomitrium patens HOM05D002759 ORTHO05D003290 1.4e-39 169.5 1485 21.5
Ah.07g205400 Amaranthus hybridus HOM05D002759 ORTHO05D003290 1.8e-39 169.1 285 36.8
unitig_26.g9017 Utricularia gibba HOM05D002759 ORTHO05D003290 1.9e-36 159.1 161 49.7
SEGI_09006 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 2.5e-36 158.7 621 25.9
SEGI_09272 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 3.3e-33 148.3 714 22.0
vmacro01780 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 1.3e-32 146.4 203 41.4
CARHR254490 Cardamine hirsuta HOM05D002759 ORTHO05D003290 2.8e-32 145.2 111 66.7
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.5e-30 138.3 180 41.7
Oeu037466.1 Olea europaea HOM05D002759 ORTHO05D003290 2.2e-29 135.6 171 44.4
Atru.chr6.1022 Acer truncatum HOM05D002759 ORTHO05D003290 6.5e-29 134.0 284 34.9
MD08G1226100 Malus domestica HOM05D002759 ORTHO05D003290 6.5e-29 134.0 345 31.3
CARHR222380 Cardamine hirsuta HOM05D002759 ORTHO05D003290 7.2e-28 130.6 173 47.4
vmacro01786 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 1.2e-27 129.8 170 41.8
CBR_g18638 Chara braunii HOM05D002759 ORTHO05D003290 4.7e-27 127.9 374 27.5
Cre01.g029200 Chlamydomonas reinhardtii HOM05D002759 ORTHO05D003290 8.8e-26 123.6 261 31.0
Aqoxy3G00697 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 9.7e-25 120.2 202 37.6
vmacro01779 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 4.8e-24 117.9 159 38.4
vmacro01782 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 1.2e-22 113.2 133 42.9
CARHR073260 Cardamine hirsuta HOM05D002759 ORTHO05D003290 6.5e-21 107.5 178 37.6
VMungo0251G3589 Vigna mungo HOM05D002759 ORTHO05D003290 7.2e-20 104.0 269 29.7
Aqoxy3G00698 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 4.4e-17 94.7 236 32.2
Ca_21888_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 3.7e-16 91.7 171 33.9
MD08G1226700 Malus domestica HOM05D002759 ORTHO05D003290 2.4e-15 89.0 250 30.8
RcHm_v2.0_Chr7g0223761 Rosa chinensis HOM05D002759 ORTHO05D003290 7.0e-15 87.4 203 32.0
SEGI_00066 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 2.7e-14 85.5 161 36.6
unitig_26.g9018 Utricularia gibba HOM05D002759 ORTHO05D003290 1.3e-13 83.2 139 35.3
SEGI_24894 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 2.2e-13 82.4 160 35.6
SEGI_36881 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 8.5e-13 80.5 84 45.2
GSVIVG01011206001 Vitis vinifera HOM05D002759 ORTHO05D003290 2.7e-11 75.5 94 43.6
GSVIVG01032173001 Vitis vinifera HOM05D002759 ORTHO05D003290 1.8e-10 72.8 112 41.1
Gohir.A01G176601 Gossypium hirsutum HOM05D002759 ORTHO05D003290 1.2e-09 70.1 74 44.6
vmacro01784 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 1.5e-09 69.7 162 27.8
SEGI_22976 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 7.5e-09 67.4 41 73.2
TAR628G0627 Trochodendron aralioides HOM05D002759 ORTHO05D021026 3.7e-08 65.1 100 40.0
TAR628G1230 Trochodendron aralioides HOM05D002759 ORTHO05D021026 3.7e-08 65.1 100 40.0
C03p84490 Brassica napus HOM05D002759 ORTHO05D032766 4.8e-08 64.7 44 65.9
Lsat_1_v5_gn_1_119700 Lactuca sativa HOM05D006671 ORTHO05D011576 6.3e-08 64.3 87 40.2
COL.COLO4_38329 Corchorus olitorius HOM05D002759 ORTHO05D003290 8.3e-08 63.9 63 47.6
Hund17373 Selenicereus undatus HOM05D002759 ORTHO05D003290 1.1e-07 63.5 188 29.3
MD08G1226600 Malus domestica HOM05D002759 ORTHO05D003290 1.8e-07 62.8 81 43.2
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 4.1e-07 61.6 101 37.6
FAN01G1856 Fragaria x ananassa HOM05D002759 ORTHO05D020730 7.0e-07 60.8 57 52.6
RcHm_v2.0_Chr4g0428231 Rosa chinensis HOM05D002759 ORTHO05D020730 7.7e-06 57.4 48 54.2


User provided reference genes

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