Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 5.7e-92 340.9 171 100.0
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 1.7e-91 339.3 171 99.4
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 1.7e-91 339.3 171 99.4
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 1.8e-90 335.9 171 97.7
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 2.0e-89 332.4 171 97.1
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 3.5e-89 331.6 171 96.5
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 8.5e-88 327.0 171 94.7
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 1.9e-87 325.9 171 94.7
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 9.4e-87 323.6 171 94.7
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 8.0e-86 320.5 171 93.0
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 8.0e-86 320.5 171 93.0
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 1.8e-85 319.3 171 92.4
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 2.6e-84 315.5 171 91.2
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 2.9e-80 302.0 171 87.1
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 2.9e-80 302.0 171 87.1
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 4.2e-79 298.1 171 87.7
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 2.8e-78 295.4 171 83.6
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 6.1e-78 294.3 164 88.4
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 1.0e-77 293.5 164 88.4
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 1.0e-77 293.5 164 88.4
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 3.0e-77 292.0 169 84.6
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 4.0e-77 291.6 171 84.2
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 3.4e-76 288.5 171 83.6
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 2.4e-74 282.3 172 83.7
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 2.1e-70 269.2 171 75.4
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 2.3e-69 265.8 171 74.3
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 2.3e-69 265.8 173 76.3
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 3.1e-69 265.4 172 76.2
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 5.2e-69 264.6 174 75.9
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 1.2e-68 263.5 173 72.8
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 1.5e-68 263.1 165 77.6
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 2.0e-68 262.7 172 73.8
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 2.6e-68 262.3 171 74.3
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 2.6e-68 262.3 178 74.7
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 3.4e-68 261.9 181 72.4
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 9.8e-68 260.4 173 71.1
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 2.2e-67 259.2 169 71.0
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 2.9e-67 258.8 174 73.6
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 1.1e-66 256.9 162 78.4
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 1.4e-66 256.5 172 72.7
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 1.4e-66 256.5 174 71.8
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 1.9e-66 256.1 181 70.2
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 1.9e-66 256.1 174 71.8
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 2.4e-66 255.8 175 72.6
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 2.4e-66 255.8 172 73.3
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 4.1e-66 255.0 174 70.7
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 4.1e-66 255.0 174 71.8
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 5.4e-66 254.6 175 72.0
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 9.2e-66 253.8 175 70.9
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 1.2e-65 253.4 175 72.0
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 1.2e-65 253.4 173 70.5
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 1.6e-65 253.1 173 72.3
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 2.7e-65 252.3 160 76.2
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 3.5e-65 251.9 173 71.7
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 4.6e-65 251.5 172 70.3
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 6.0e-65 251.1 167 72.5
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 7.8e-65 250.8 202 66.3
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 7.8e-65 250.8 170 71.8
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 7.8e-65 250.8 173 72.3
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 1.0e-64 250.4 174 71.3
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 1.0e-64 250.4 175 70.3
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 1.0e-64 250.4 173 71.1
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 1.3e-64 250.0 171 70.2
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 1.3e-64 250.0 171 71.3
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 1.7e-64 249.6 164 73.8
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 1.7e-64 249.6 169 71.0
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.3e-64 249.2 202 65.8
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.3e-64 249.2 202 65.8
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 2.3e-64 249.2 171 70.8
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 2.3e-64 249.2 171 71.3
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 2.3e-64 249.2 163 74.2
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 2.3e-64 249.2 161 72.7
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 5.0e-64 248.1 168 71.4
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 5.0e-64 248.1 163 73.6
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 6.6e-64 247.7 165 72.7
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 8.6e-64 247.3 181 69.1
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 8.6e-64 247.3 168 70.8
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 1.1e-63 246.9 173 70.5
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 1.9e-63 246.1 178 69.1
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 2.5e-63 245.7 173 71.1
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 3.3e-63 245.4 159 74.8
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 3.3e-63 245.4 170 71.2
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 3.3e-63 245.4 173 69.9
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 4.3e-63 245.0 159 74.2
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 9.5e-63 243.8 173 69.4
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 9.5e-63 243.8 173 69.4
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 9.5e-63 243.8 173 69.4
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 1.2e-62 243.4 163 73.0
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 1.2e-62 243.4 159 74.8
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 2.1e-62 242.7 159 74.2
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 2.8e-62 242.3 172 70.9
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 2.8e-62 242.3 173 69.9
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 2.8e-62 242.3 196 64.3
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 1.8e-61 239.6 157 72.6
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 1.8e-61 239.6 168 67.3
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 2.3e-61 239.2 159 73.0
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 8.9e-61 237.3 173 69.4
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 1.2e-60 236.9 208 59.6
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 7.5e-60 234.2 159 74.2
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 9.8e-60 233.8 168 67.9
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 3.7e-59 231.9 173 63.6
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 1.1e-58 230.3 176 66.5
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 1.9e-58 229.6 173 63.6
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 4.6e-57 224.9 165 64.8
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 2.3e-56 222.6 225 52.4
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 2.3e-56 222.6 166 63.9
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 6.6e-56 221.1 171 63.2
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 8.6e-56 220.7 139 77.0
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 8.6e-56 220.7 211 58.8
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 3.3e-55 218.8 189 63.5
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 5.6e-55 218.0 219 55.3
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 1.4e-53 213.4 142 70.4
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 2.0e-52 209.5 255 47.5
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 3.2e-50 202.2 164 64.6
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 3.0e-48 195.7 173 60.7
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 1.4e-45 186.8 168 55.4
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 2.4e-45 186.0 120 74.2
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 1.3e-43 180.3 113 73.5
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 8.4e-43 177.6 173 59.0
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 6.2e-38 161.4 116 73.3
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 1.1e-37 160.6 107 72.0
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 2.0e-36 156.4 113 62.8
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 9.9e-36 154.1 119 68.1
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 3.8e-35 152.1 116 61.2
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 6.4e-35 151.4 107 68.2
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 8.4e-35 151.0 101 71.3
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 7.1e-34 147.9 139 47.5
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 2.1e-33 146.4 148 45.9
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 2.7e-33 146.0 96 70.8
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 7.8e-33 144.4 74 97.3
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 7.8e-33 144.4 74 97.3
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 1.1e-29 134.0 74 89.2
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 1.5e-28 130.2 89 69.7
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 5.8e-28 128.3 111 55.9
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 2.2e-27 126.3 103 64.1
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 5.4e-26 121.7 65 93.8
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.4e-21 106.3 111 53.2
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 5.3e-21 105.1 64 78.1
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 9.0e-21 104.4 112 38.4
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 2.0e-20 103.2 63 77.8
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 3.4e-20 102.4 104 43.3
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 1.0e-19 100.9 101 40.6
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.0e-19 100.9 93 57.0
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 1.4e-18 97.1 61 72.1
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 1.8e-16 90.1 62 66.1
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 1.8e-16 90.1 95 46.3
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 4.3e-15 85.5 106 37.7
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 4.8e-14 82.0 50 72.0
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 1.8e-13 80.1 136 34.6
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 2.9e-11 72.8 104 42.3
SalBow2G0716 Salvia bowleyana HOM05D000282 ORTHO05D000272 1.3e-06 57.4 32 84.4


User provided reference genes

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