Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC4t22170H Brassica oleracea HOM05D006965 ORTHO05D008652 1.4e-215 752.7 368 100.0
BcaC02g12316 Brassica carinata HOM05D006965 ORTHO05D008652 1.1e-196 689.9 368 93.5
C04p05300 Brassica napus HOM05D006965 ORTHO05D008652 1.1e-196 689.9 368 93.5
A05p04570 Brassica napus HOM05D006965 ORTHO05D008652 4.0e-183 644.8 370 88.1
BraA05t19431Z Brassica rapa HOM05D006965 ORTHO05D008652 4.1e-180 634.8 370 87.8
BcaB02g08813 Brassica carinata HOM05D006965 ORTHO05D008652 1.8e-175 619.4 364 85.4
AT2G44420 Arabidopsis thaliana HOM05D006965 ORTHO05D008652 5.4e-164 581.3 375 76.8
AL4G43420 Arabidopsis lyrata HOM05D006965 ORTHO05D008652 2.5e-161 572.4 369 77.5
Thhalv10001527m.g Eutrema salsugineum HOM05D006965 ORTHO05D008652 2.5e-161 572.4 369 78.0
Carub.0004s2700 Capsella rubella HOM05D006965 ORTHO05D008652 1.2e-160 570.1 368 76.6
Sp4g26490 Schrenkiella parvula HOM05D006965 ORTHO05D008652 2.1e-160 569.3 368 78.3
THA.LOC104827577 Tarenaya hassleriana HOM05D006965 ORTHO05D008652 7.3e-145 517.7 368 68.2
Aa31LG1G25970 Aethionema arabicum HOM05D006965 ORTHO05D008652 5.8e-142 508.1 385 66.8
Thecc.01G416200 Theobroma cacao HOM05D006965 ORTHO05D008652 9.7e-121 437.6 375 57.9
Gohir.A08G026760 Gossypium hirsutum HOM05D006965 ORTHO05D008652 1.3e-117 427.2 372 56.7
Gohir.D08G037500 Gossypium hirsutum HOM05D006965 ORTHO05D008652 1.4e-116 423.7 372 56.5
Actinidia32338 Actinidia chinensis HOM05D006965 ORTHO05D008652 1.9e-116 423.3 372 57.3
Gorai.004G035500 Gossypium raimondii HOM05D006965 ORTHO05D008652 5.5e-116 421.8 372 56.2
Ciclev10031978m.g Citrus clementina HOM05D006965 ORTHO05D008652 3.0e-114 416.0 368 56.0
Manes.10G151000 Manihot esculenta HOM05D006965 ORTHO05D008652 8.8e-114 414.5 372 55.1
Potri.009G023200 Populus trichocarpa HOM05D006965 ORTHO05D008652 4.3e-113 412.1 368 54.6
Sabra09G0014600 Salix brachista HOM05D006965 ORTHO05D008652 1.1e-111 407.5 368 53.5
Atru.chr11.2694 Acer truncatum HOM05D006965 ORTHO05D008652 2.6e-110 402.9 366 53.3
CSS0026631 Camellia sinensis var. sinensis HOM05D006965 ORTHO05D008652 1.9e-108 396.7 372 54.3
PGSC0003DMG400006312 Solanum tuberosum HOM05D006965 ORTHO05D008652 3.6e-107 392.5 370 52.2
Nn2g15664 Nelumbo nucifera HOM05D006965 ORTHO05D008652 2.3e-106 389.8 356 54.5
TAR633G1267 Trochodendron aralioides HOM05D006965 ORTHO05D008652 2.3e-106 389.8 372 54.0
vmacro13617 Vaccinium macrocarpon HOM05D006965 ORTHO05D008652 2.3e-106 389.8 372 52.2
CiPaw.13G000900 Carya illinoinensis HOM05D006965 ORTHO05D008652 3.9e-106 389.0 372 53.0
Lj3g0017203 Lotus japonicus HOM05D006965 ORTHO05D008652 6.7e-106 388.3 370 51.1
TWI73G0408 Tripterygium wilfordii HOM05D006965 ORTHO05D008652 8.8e-106 387.9 366 54.4
CAN.G261.10 Capsicum annuum HOM05D006965 ORTHO05D008652 4.4e-105 385.6 370 51.9
Nitab4.5_0004592g0020 Nicotiana tabacum HOM05D006965 ORTHO05D008652 5.7e-105 385.2 370 51.1
Sopen01g033500 Solanum pennellii HOM05D006965 ORTHO05D008652 5.7e-105 385.2 370 50.8
Lalb_Chr25g0283521 Lupinus albus HOM05D006965 ORTHO05D008652 9.7e-105 384.4 363 51.5
Nitab4.5_0000892g0120 Nicotiana tabacum HOM05D006965 ORTHO05D008652 9.7e-105 384.4 370 51.4
MD02G1318500 Malus domestica HOM05D006965 ORTHO05D008652 2.2e-104 383.3 372 51.3
TPR.G11733 Trifolium pratense HOM05D006965 ORTHO05D008652 3.7e-104 382.5 369 51.5
Solyc01g073930.3 Solanum lycopersicum HOM05D006965 ORTHO05D008652 8.2e-104 381.3 370 50.0
AUR62012162 Chenopodium quinoa HOM05D006965 ORTHO05D008652 1.1e-103 380.9 363 51.5
Cfa004805 Carpinus fangiana HOM05D006965 ORTHO05D008652 4.1e-103 379.0 372 51.1
Haze_10398 Corylus avellana HOM05D006965 ORTHO05D008652 5.3e-103 378.6 376 51.1
FAN01G2144 Fragaria x ananassa HOM05D006965 ORTHO05D008652 9.1e-103 377.9 370 51.4
RcHm_v2.0_Chr1g0313421 Rosa chinensis HOM05D006965 ORTHO05D008652 9.1e-103 377.9 370 51.1
MD07G1002700 Malus domestica HOM05D006965 ORTHO05D008652 3.4e-102 375.9 386 49.2
MBI04_g33895_MAGBIO Magnolia biondii HOM05D006965 ORTHO05D008652 7.7e-102 374.8 372 50.0
Cc02_g27080 Coffea canephora HOM05D006965 ORTHO05D008652 1.3e-101 374.0 370 50.3
QL04p003153 Quercus lobata HOM05D006965 ORTHO05D008652 1.3e-101 374.0 372 50.8
Sc12g0002350 Simmondsia chinensis HOM05D006965 ORTHO05D008652 1.3e-101 374.0 375 49.3
Aqoxy1G00028 Aquilegia oxysepala HOM05D006965 ORTHO05D008652 1.7e-101 373.6 364 51.6
MSTRG.17063 Avicennia marina HOM05D006965 ORTHO05D008652 2.2e-101 373.2 375 51.2
Rhsim07G0050600 Rhododendron simsii HOM05D006965 ORTHO05D008652 2.2e-101 373.2 350 51.1
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 2.9e-101 372.9 366 50.0
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 2.9e-101 372.9 366 50.0
CsaV3_3G032450 Cucumis sativus L. HOM05D006965 ORTHO05D008652 3.8e-101 372.5 372 50.0
PSO339G5860 Papaver somniferum HOM05D006965 ORTHO05D008652 3.8e-101 372.5 373 49.6
Migut.B01364 Erythranthe guttata HOM05D006965 ORTHO05D008652 6.5e-101 371.7 373 51.5
Phvul.005G039600 Phaseolus vulgaris HOM05D006965 ORTHO05D008652 1.9e-100 370.2 369 49.9
CANSAT78G1981 Cannabis sativa HOM05D006965 ORTHO05D008652 2.5e-100 369.8 372 49.7
Glyma.08G149400 Glycine max HOM05D006965 ORTHO05D008652 3.2e-100 369.4 370 50.0
QL04p000072 Quercus lobata HOM05D006965 ORTHO05D008652 3.2e-100 369.4 370 49.7
Psat1g128200 Pisum sativum HOM05D006965 ORTHO05D008652 4.2e-100 369.0 369 50.9
SGA_v2.0_scaffold5G03114 Striga asiatica HOM05D006965 ORTHO05D008652 4.2e-100 369.0 364 51.1
FvH4_7g00170 Fragaria vesca HOM05D006965 ORTHO05D008652 5.5e-100 368.6 388 49.0
QL04p003146 Quercus lobata HOM05D006965 ORTHO05D008652 1.2e-99 367.5 372 50.5
Medtr2g060820 Medicago truncatula HOM05D006965 ORTHO05D008652 2.1e-99 366.7 346 50.3
SalBow5G3371 Salvia bowleyana HOM05D006965 ORTHO05D008652 4.7e-99 365.5 352 50.0
TAR362G1148 Trochodendron aralioides HOM05D006965 ORTHO05D008652 6.1e-99 365.2 317 58.7
ClCG10G012640 Citrullus lanatus HOM05D006965 ORTHO05D008652 1.0e-98 364.4 384 48.7
PSO384G4145 Papaver somniferum HOM05D006965 ORTHO05D008652 1.0e-98 364.4 372 48.4
Eucgr.G02572 Eucalyptus grandis HOM05D006965 ORTHO05D008652 1.4e-98 364.0 373 50.7
GSVIVG01001368001 Vitis vinifera HOM05D006965 ORTHO05D008652 2.3e-98 363.2 337 53.4
ECA248G1794 Erigeron canadensis HOM05D006965 ORTHO05D008652 1.8e-95 353.6 373 48.5
Ca_02931_v3 Cicer arietinum L. HOM05D006965 ORTHO05D008652 2.4e-95 353.2 346 49.4
VMungo1080G1640 Vigna mungo HOM05D006965 ORTHO05D008652 3.1e-95 352.8 351 49.0
AUR62022798 Chenopodium quinoa HOM05D006965 ORTHO05D008652 3.5e-94 349.4 368 47.8
CARHR139580 Cardamine hirsuta HOM05D006965 ORTHO05D008652 5.9e-94 348.6 218 72.9
MELO3C023943.2 Cucumis melo HOM05D006965 ORTHO05D008652 2.9e-93 346.3 373 47.2
FAN10G4273 Fragaria x ananassa HOM05D006965 ORTHO05D008652 2.9e-93 346.3 385 47.0
PGR004G0492 Punica granatum HOM05D006965 ORTHO05D008652 2.9e-93 346.3 317 55.5
Sed0016917 Sechium edule HOM05D006965 ORTHO05D008652 8.5e-93 344.7 378 47.4
Prupe.2G004200 Prunus persica HOM05D006965 ORTHO05D008652 1.6e-91 340.5 287 56.1
Hund16040 Selenicereus undatus HOM05D006965 ORTHO05D008652 2.7e-91 339.7 353 47.6
Dinv43490 Davidia involucrata HOM05D006965 ORTHO05D008652 8.0e-91 338.2 274 61.3
FAN01G0465 Fragaria x ananassa HOM05D006965 ORTHO05D008652 1.0e-90 337.8 346 49.7
Zm00001eb275720 Zea mays HOM05D006965 ORTHO05D008652 8.8e-90 334.7 367 45.8
FAN06G0111 Fragaria x ananassa HOM05D006965 ORTHO05D008652 1.2e-89 334.3 370 47.3
Os06g0618150 Oryza sativa ssp. japonica HOM05D006965 ORTHO05D008652 2.0e-89 333.6 366 46.2
Hma1.2p1_2998F.1_g331493 Hydrangea macrophylla HOM05D006965 ORTHO05D008652 1.0e-85 321.2 264 60.2
EL10Ac2g04673 Beta vulgaris HOM05D006965 ORTHO05D008652 2.2e-85 320.1 315 51.4
Hma1.2p1_2998F.1_g331496 Hydrangea macrophylla HOM05D006965 ORTHO05D008652 8.5e-85 318.2 251 61.8
ATR0605G047 Amborella trichopoda HOM05D006965 ORTHO05D008652 1.1e-84 317.8 368 45.1
HanXRQChr01g0018681 Helianthus annuus HOM05D006965 ORTHO05D008652 1.6e-83 313.9 363 45.2
COL.COLO4_23913 Corchorus olitorius HOM05D006280 ORTHO05D008652 2.2e-80 303.5 241 60.6
Ah.16g102760 Amaranthus hybridus HOM05D006965 ORTHO05D008652 1.1e-79 301.2 369 46.1
Duzib114G0529 Durio zibethinus HOM05D006965 ORTHO05D008652 9.1e-79 298.1 374 44.1
Lsat_1_v5_gn_1_110081 Lactuca sativa HOM05D006965 ORTHO05D008652 1.4e-74 284.3 304 51.0
FAN03G0167 Fragaria x ananassa HOM05D006965 ORTHO05D008652 2.0e-73 280.4 249 55.0
CDE05G0249 Ceratophyllum demersum HOM05D006965 ORTHO05D008652 5.7e-73 278.9 285 49.5
unitig_26.g9594 Utricularia gibba HOM05D001227 ORTHO05D001082 3.1e-71 273.1 366 42.3
Peaxi162Scf00878g00321 Petunia axillaris HOM05D006965 ORTHO05D008652 1.0e-69 268.1 261 51.3
HPP92_002651 Vanilla planifolia HOM05D006965 ORTHO05D008652 8.9e-66 255.0 258 46.5
Cfa022003 Carpinus fangiana HOM05D006965 ORTHO05D008652 7.8e-62 241.9 200 57.0
Mapoly0087s0073 Marchantia polymorpha HOM05D006965 ORTHO05D008652 1.5e-57 227.6 381 35.2
arahy.Tifrunner.gnm1.ann1.Z1UMC7 Arachis hypogaea HOM05D006965 ORTHO05D008652 4.1e-55 219.5 217 51.6
DCAR_029603 Daucus carota HOM05D006965 ORTHO05D008652 2.1e-54 217.2 313 39.9
arahy.Tifrunner.gnm1.ann1.ZJD8NP Arachis hypogaea HOM05D006965 ORTHO05D008652 1.5e-49 201.1 245 44.9
SEGI_12556 Sequoiadendron giganteum HOM05D006965 ORTHO05D008652 2.1e-38 164.1 150 52.0
Eucgr.L03457 Eucalyptus grandis HOM05D006965 ORTHO05D008652 1.7e-37 161.0 152 48.0
SMO132G0001 Selaginella moellendorffii HOM05D006965 ORTHO05D008652 7.8e-30 135.6 324 31.2
Haze_10414 Corylus avellana HOM05D006965 ORTHO05D008652 1.5e-28 131.3 100 58.0
SMO147G0191 Selaginella moellendorffii HOM05D020017 ORTHO05D022314 3.6e-27 126.7 181 40.9
Oeu009369.1 Olea europaea HOM05D006965 ORTHO05D008652 1.4e-26 124.8 144 43.1
Cpa.g.sc189.20 Carica papaya HOM05D006965 ORTHO05D008652 4.2e-15 86.7 95 44.2
TPR.G14363 Trifolium pratense HOM05D006965 ORTHO05D008652 3.5e-14 83.6 70 58.6
Cpa.g.sc189.19 Carica papaya HOM05D006965 ORTHO05D008652 8.7e-13 79.0 84 54.8


User provided reference genes

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