Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 6.3e-187 657.5 388 100.0
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 7.9e-182 640.6 379 100.0
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 1.2e-166 590.1 379 95.0
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 8.2e-155 550.8 390 89.7
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 1.8e-138 496.5 362 89.2
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 1.1e-122 444.1 406 70.4
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 5.6e-119 431.8 416 74.3
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 1.2e-118 430.6 435 67.4
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 1.2e-118 430.6 416 74.0
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 1.6e-118 430.3 407 75.2
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 1.1e-117 427.6 416 74.3
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 1.4e-117 427.2 413 74.6
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 6.8e-117 424.9 391 76.2
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 2.6e-116 422.9 434 68.0
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 1.3e-115 420.6 391 76.0
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 1.7e-115 420.2 391 75.7
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 1.6e-113 413.7 391 67.5
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 3.3e-103 379.4 436 62.2
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 3.1e-101 372.9 396 70.2
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 4.8e-94 349.0 425 55.1
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 1.1e-93 347.8 424 65.6
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 6.4e-91 338.6 414 64.5
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 7.4e-87 325.1 471 57.7
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 7.4e-87 325.1 364 56.9
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 2.3e-72 276.9 464 54.7
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 4.1e-69 266.2 446 54.0
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 1.0e-64 251.5 215 68.8
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 6.5e-59 232.3 438 40.9
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 6.5e-59 232.3 438 40.9
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 9.7e-55 218.4 433 44.3
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 1.3e-51 208.0 425 38.1
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 2.5e-50 203.8 426 38.5
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 3.2e-50 203.4 431 45.7
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 3.2e-50 203.4 429 37.5
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 7.2e-50 202.2 435 38.4
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 2.3e-48 197.2 434 42.4
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 1.1e-45 188.3 457 37.4
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 1.6e-44 184.5 431 42.7
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 7.7e-44 182.2 451 35.3
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 1.0e-43 181.8 432 37.0
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 1.1e-42 178.3 430 40.0
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 3.2e-42 176.8 419 40.1
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 2.7e-41 173.7 434 35.7
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 4.7e-41 172.9 414 39.9
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 2.3e-40 170.6 418 39.0
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 5.2e-40 169.5 434 34.1
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 4.4e-39 166.4 431 35.3
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 5.7e-39 166.0 444 34.9
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 9.8e-39 165.2 427 35.1
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 2.8e-38 163.7 418 34.0
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 8.3e-38 162.2 424 37.5
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 2.0e-36 157.5 439 36.9
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 4.5e-36 156.4 426 34.3
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 4.5e-36 156.4 406 35.2
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 4.5e-36 156.4 406 35.2
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 2.9e-35 153.7 395 34.7
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 3.8e-35 153.3 448 39.3
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 6.5e-35 152.5 423 39.2
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 2.5e-34 150.6 454 34.1
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 3.2e-34 150.2 438 33.3
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 4.2e-34 149.8 422 38.6
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 5.5e-34 149.4 395 33.2
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 5.5e-34 149.4 416 34.9
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 9.4e-34 148.7 422 40.3
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 9.4e-34 148.7 422 40.3
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 9.4e-34 148.7 448 35.0
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 9.4e-34 148.7 244 45.5
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.2e-33 148.3 422 40.5
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 1.2e-33 148.3 456 34.2
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 2.1e-33 147.5 455 32.5
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 4.7e-33 146.4 426 38.0
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 6.1e-33 146.0 395 32.9
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 6.1e-33 146.0 395 32.9
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 6.1e-33 146.0 395 37.5
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 1.0e-32 145.2 433 34.9
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 1.4e-32 144.8 428 36.7
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.4e-32 144.8 447 33.3
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.8e-32 144.4 420 40.7
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.8e-32 144.4 456 32.7
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 1.8e-32 144.4 411 33.8
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.8e-32 144.4 447 33.3
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 5.2e-32 142.9 444 39.2
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 1.2e-31 141.7 413 34.4
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 2.6e-31 140.6 435 35.9
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 3.4e-31 140.2 454 32.2
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 9.8e-31 138.7 450 33.6
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 1.3e-30 138.3 437 36.8
BcaC04g21425 Brassica carinata HOM05D004568 ORTHO05D005343 1.7e-30 137.9 237 42.6
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 2.2e-30 137.5 368 34.0
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.1e-29 135.2 406 33.0
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 2.4e-29 134.0 246 40.2
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 9.1e-29 132.1 247 39.7
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 1.6e-28 131.3 435 31.5
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 7.7e-28 129.0 412 36.7
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.0e-27 128.6 243 42.8
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 1.7e-27 127.9 229 39.3
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 8.6e-27 125.6 205 44.4
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 1.5e-26 124.8 420 31.7
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 1.9e-26 124.4 402 31.6
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 2.5e-26 124.0 359 30.9
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 5.5e-26 122.9 399 30.8
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 4.7e-25 119.8 411 31.9
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 1.4e-24 118.2 417 30.0
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 1.4e-24 118.2 251 39.8
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 4.0e-24 116.7 435 29.7
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 1.5e-23 114.8 256 37.9
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 4.4e-23 113.2 268 37.7
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 7.5e-23 112.5 241 38.2
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 2.9e-22 110.5 424 31.1
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 3.7e-22 110.2 377 30.8
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 3.7e-22 110.2 377 30.8
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 1.1e-21 108.6 408 29.2
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 1.1e-21 108.6 229 38.9
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 1.8e-21 107.8 229 38.4
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 1.8e-21 107.8 229 38.4
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 3.2e-21 107.1 431 28.3
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 9.2e-21 105.5 118 51.7
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 9.2e-21 105.5 210 40.0
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 1.2e-20 105.1 255 36.1
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 1.0e-19 102.1 430 29.8
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 1.3e-19 101.7 406 28.8
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 1.7e-19 101.3 231 37.2
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 1.7e-19 101.3 231 37.2
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 2.9e-19 100.5 205 38.5
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 3.9e-19 100.1 254 35.8
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 5.0e-19 99.8 411 28.2
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 7.3e-18 95.9 218 36.7
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 9.5e-18 95.5 256 34.8
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 9.5e-18 95.5 256 34.8
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 9.5e-18 95.5 218 36.7
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 6.1e-17 92.8 218 36.7
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 1.0e-16 92.0 410 27.8
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 1.0e-16 92.0 411 27.7
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 1.4e-16 91.7 250 36.4
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 6.8e-16 89.4 158 38.0
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 3.4e-15 87.0 341 29.3
Haze_11818 Corylus avellana HOM05D004568 ORTHO05D005343 2.2e-14 84.3 267 31.8
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 2.9e-14 84.0 196 37.8
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 1.1e-13 82.0 230 34.3
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 6.0e-12 76.3 426 26.5
unitig_26.g10277 Utricularia gibba HOM05D004568 ORTHO05D005343 1.0e-11 75.5 179 31.8
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 1.3e-11 75.1 244 31.1
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 3.0e-11 73.9 257 32.7
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 9.5e-10 68.9 239 34.7
SEGI_17788 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 9.5e-10 68.9 142 32.4
unitig_699.g19898 Utricularia gibba HOM05D004568 ORTHO05D005343 8.1e-09 65.9 115 40.0
vmacro10495 Vaccinium macrocarpon HOM05D004568 ORTHO05D005343 1.2e-07 62.0 407 26.3
CDE04G2720 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 3.4e-07 60.5 77 39.0
Ah.06g195100 Amaranthus hybridus HOM05D004568 ORTHO05D005343 4.9e-06 56.6 437 26.8


User provided reference genes

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