Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC2t08058H Brassica oleracea HOM05D004230 ORTHO05D007976 8.0e-216 753.4 372 100.0
BolC7t42083H Brassica oleracea HOM05D004230 ORTHO05D007976 6.9e-151 537.7 384 74.5
C07p15900 Brassica napus HOM05D004230 ORTHO05D007976 3.0e-146 522.3 272 96.0
C02p19260 Brassica napus HOM05D004230 ORTHO05D007976 1.1e-116 424.1 240 91.2
A06p45730 Brassica napus HOM05D004230 ORTHO05D007976 5.1e-61 239.2 402 37.8
BcaB05g22709 Brassica carinata HOM05D004230 ORTHO05D007976 4.5e-57 226.1 365 37.3
BraA06t26555Z Brassica rapa HOM05D004230 ORTHO05D007976 1.6e-54 217.6 378 37.3
BraA10t43214Z Brassica rapa HOM05D004230 ORTHO05D007976 2.3e-53 213.8 152 64.5
BcaB06g27526 Brassica carinata HOM05D004230 ORTHO05D007976 3.0e-53 213.4 342 38.6
BcaB07g32504 Brassica carinata HOM05D004230 ORTHO05D007976 3.0e-53 213.4 399 36.3
BraA03t13046Z Brassica rapa HOM05D004230 ORTHO05D007976 3.0e-53 213.4 394 36.3
C02p00010 Brassica napus HOM05D004230 ORTHO05D007976 6.7e-53 212.2 148 65.5
BolC5t32761H Brassica oleracea HOM05D004230 ORTHO05D007976 1.5e-52 211.1 311 39.9
BcaC01g00380 Brassica carinata HOM05D004230 ORTHO05D007976 2.8e-51 206.8 110 94.5
BcaC05g28003 Brassica carinata HOM05D004230 ORTHO05D007976 8.2e-51 205.3 148 64.2
C05p40190 Brassica napus HOM05D004230 ORTHO05D007976 2.4e-50 203.8 148 63.5
AL7G44480 Arabidopsis lyrata HOM05D004230 ORTHO05D007976 1.3e-48 198.0 154 61.7
BcaC03g18110 Brassica carinata HOM05D004230 ORTHO05D007976 1.2e-46 191.4 110 85.5
BolC2t12233H Brassica oleracea HOM05D004230 ORTHO05D007976 3.5e-46 189.9 128 78.1
C03p63400 Brassica napus HOM05D030526 ORTHO05D028078 6.0e-46 189.1 113 85.8
BcaC06g34422 Brassica carinata HOM05D004230 ORTHO05D007976 4.3e-44 183.0 287 42.2
C07p28690 Brassica napus HOM05D004230 ORTHO05D007976 6.3e-43 179.1 222 45.9
BolC7t43407H Brassica oleracea HOM05D004230 ORTHO05D007976 6.3e-43 179.1 222 45.9
BcaC09g49346 Brassica carinata HOM05D004230 ORTHO05D024011 1.8e-42 177.6 214 48.1
BolC3t20148H Brassica oleracea HOM05D004230 ORTHO05D007976 2.9e-40 170.2 122 76.2
Sp4g02630 Schrenkiella parvula HOM05D004230 ORTHO05D007976 2.9e-40 170.2 114 64.0
CARHR102540 Cardamine hirsuta HOM05D004230 ORTHO05D007976 6.1e-38 162.5 120 62.5
Sp3g29180 Schrenkiella parvula HOM05D004230 ORTHO05D007976 2.3e-37 160.6 243 41.2
C04p25730 Brassica napus HOM05D030526 ORTHO05D028078 1.1e-36 158.3 115 73.0
BolC4t24235H Brassica oleracea HOM05D030526 ORTHO05D028078 1.1e-36 158.3 115 73.0
C01p40550 Brassica napus HOM05D004230 ORTHO05D007976 1.8e-34 151.0 139 53.2
BraA06t26245Z Brassica rapa HOM05D004230 ORTHO05D007976 6.9e-34 149.1 148 49.3
C01p22920 Brassica napus HOM05D004230 ORTHO05D007976 9.1e-34 148.7 139 51.8
C07p48530 Brassica napus HOM05D004230 ORTHO05D007976 1.2e-33 148.3 146 52.1
BolC7t45361H Brassica oleracea HOM05D004230 ORTHO05D007976 1.2e-33 148.3 146 52.1
BraA06t24715Z Brassica rapa HOM05D004230 ORTHO05D007976 1.2e-33 148.3 139 51.8
C01p22890 Brassica napus HOM05D004230 ORTHO05D007976 3.4e-33 146.7 139 51.1
BcaC09g52278 Brassica carinata HOM05D004230 ORTHO05D007976 5.9e-33 146.0 138 51.4
C01p22970 Brassica napus HOM05D004230 ORTHO05D007976 5.9e-33 146.0 139 51.1
BolC1t02226H Brassica oleracea HOM05D004230 ORTHO05D007976 5.9e-33 146.0 138 51.4
A06p33150 Brassica napus HOM05D004230 ORTHO05D007976 1.0e-32 145.2 148 48.0
C07p50550 Brassica napus HOM05D004230 ORTHO05D007976 1.0e-32 145.2 148 48.6
BcaC09g49449 Brassica carinata HOM05D004230 ORTHO05D007976 1.7e-32 144.4 146 51.4
BcaB06g26529 Brassica carinata HOM05D004230 ORTHO05D007976 3.8e-32 143.3 148 50.0
BolC2t08696H Brassica oleracea HOM05D004230 ORTHO05D007976 3.8e-32 143.3 148 48.0
AT5G36080 Arabidopsis thaliana HOM05D004230 ORTHO05D007976 5.0e-32 142.9 188 46.3
A03p38990 Brassica napus HOM05D004230 ORTHO05D007976 6.5e-32 142.5 344 32.3
BolC5t30511H Brassica oleracea HOM05D004230 ORTHO05D007976 8.5e-32 142.1 148 47.3
BolC3t17847H Brassica oleracea HOM05D004230 ORTHO05D007976 3.2e-31 140.2 148 48.0
AL5G11160 Arabidopsis lyrata HOM05D004230 ORTHO05D007976 4.2e-31 139.8 147 46.3
BraA09t39059Z Brassica rapa HOM05D004230 ORTHO05D007976 7.2e-31 139.0 147 48.3
Carub.0007s3043 Capsella rubella HOM05D004230 ORTHO05D007976 1.6e-30 137.9 134 50.7
C08p27070 Brassica napus HOM05D004230 ORTHO05D007976 3.6e-30 136.7 118 53.4
BolC4t28062H Brassica oleracea HOM05D004230 ORTHO05D007976 1.0e-29 135.2 139 49.6
A09p35300 Brassica napus HOM05D004230 ORTHO05D007976 1.8e-29 134.4 147 46.9
BcaC07g36911 Brassica carinata HOM05D004230 ORTHO05D007976 6.7e-29 132.5 145 46.2
C01p41060 Brassica napus HOM05D004230 ORTHO05D021768 8.8e-29 132.1 97 73.2
C08p01070 Brassica napus HOM05D004230 ORTHO05D007976 2.6e-28 130.6 145 45.5
BcaC03g16826 Brassica carinata HOM05D004230 ORTHO05D007976 1.3e-27 128.3 130 50.8
Carub.0012s0003 Capsella rubella HOM05D004230 ORTHO05D007976 3.7e-27 126.7 163 42.9
Sp4g09110 Schrenkiella parvula HOM05D004230 ORTHO05D000563 3.7e-27 126.7 128 54.7
BolC8t46909H Brassica oleracea HOM05D004230 ORTHO05D007976 8.2e-27 125.6 198 38.9
BolC6t36485H Brassica oleracea HOM05D004230 ORTHO05D007976 1.8e-26 124.4 319 30.7
BraA03t15403Z Brassica rapa HOM05D004230 ORTHO05D007976 2.4e-26 124.0 165 42.4
C06p14020 Brassica napus HOM05D004230 ORTHO05D007976 3.1e-26 123.6 334 28.4
A06p20520 Brassica napus HOM05D004230 ORTHO05D007976 6.9e-26 122.5 155 41.9
C04p52580 Brassica napus HOM05D004230 ORTHO05D007976 2.0e-25 120.9 98 57.1
BolC8t50322H Brassica oleracea HOM05D004230 ORTHO05D007976 3.4e-25 120.2 285 30.5
BraA01t02220Z Brassica rapa HOM05D004230 ORTHO05D007976 4.5e-25 119.8 318 28.6
BcaB05g23135 Brassica carinata HOM05D004230 ORTHO05D007976 1.0e-24 118.6 98 55.1
C05p44100 Brassica napus HOM05D004230 ORTHO05D007976 1.0e-24 118.6 331 28.7
C01p36620 Brassica napus HOM05D004230 ORTHO05D007976 2.2e-24 117.5 97 55.7
BolC1t03622H Brassica oleracea HOM05D004230 ORTHO05D007976 2.2e-24 117.5 97 55.7
C03p27680 Brassica napus HOM05D004230 ORTHO05D007976 6.5e-24 115.9 118 53.4
BcaC08g43996 Brassica carinata HOM05D004230 ORTHO05D007976 8.5e-24 115.5 98 53.1
BcaC05g28343 Brassica carinata HOM05D004230 ORTHO05D007976 1.4e-23 114.8 98 54.1
BcaB01g00472 Brassica carinata HOM05D004230 ORTHO05D007976 1.9e-23 114.4 154 41.6
BcaC05g25838 Brassica carinata HOM05D004230 ORTHO05D007976 3.2e-23 113.6 98 51.0
BcaC01g03708 Brassica carinata HOM05D004230 ORTHO05D007976 4.2e-23 113.2 98 51.0
BcaC03g15070 Brassica carinata HOM05D004230 ORTHO05D007976 9.4e-23 112.1 98 51.0
BcaC02g09042 Brassica carinata HOM05D004230 ORTHO05D007976 1.2e-22 111.7 98 50.0
C01p37620 Brassica napus HOM05D038736 ORTHO05D041661 8.0e-22 109.0 83 69.9
CARHR145800 Cardamine hirsuta HOM05D004230 ORTHO05D007976 1.0e-21 108.6 169 40.8
BcaC09g49284 Brassica carinata HOM05D004230 ORTHO05D007976 5.2e-21 106.3 97 49.5
BolC1t03727H Brassica oleracea HOM05D038736 ORTHO05D041661 8.8e-21 105.5 83 68.7
A01p37400 Brassica napus HOM05D004230 ORTHO05D021768 1.5e-20 104.8 88 60.2
BolC5t33361H Brassica oleracea HOM05D004230 ORTHO05D007976 2.6e-20 104.0 118 50.8
AL8G23470 Arabidopsis lyrata HOM05D004230 ORTHO05D007976 5.7e-20 102.8 128 46.9
Carub.0007s3045 Capsella rubella HOM05D004230 ORTHO05D007976 5.7e-20 102.8 114 47.4
BcaC02g08615 Brassica carinata HOM05D004230 ORTHO05D007976 7.4e-20 102.4 139 42.4
BolC3t20706H Brassica oleracea HOM05D004230 ORTHO05D007976 1.3e-19 101.7 66 65.2
BraA04t16761Z Brassica rapa HOM05D037366 ORTHO05D042224 4.8e-19 99.8 172 36.6
Sp2g07590 Schrenkiella parvula HOM05D004230 ORTHO05D007976 4.8e-19 99.8 239 29.7
A04p10960 Brassica napus HOM05D037366 ORTHO05D042224 6.3e-19 99.4 172 36.6
SpUn0171_0010 Schrenkiella parvula HOM05D004230 ORTHO05D007976 4.5e-17 93.2 147 36.1
Carub.0007s3044 Capsella rubella HOM05D004230 ORTHO05D007976 5.9e-17 92.8 78 53.8
AT3G30520 Arabidopsis thaliana HOM05D004230 ORTHO05D007976 7.7e-17 92.4 61 62.3
Carub.0007s3042 Capsella rubella HOM05D004230 ORTHO05D007976 1.7e-16 91.3 109 44.0
Sp3g24280 Schrenkiella parvula HOM05D004230 ORTHO05D007976 1.7e-16 91.3 288 27.4
A01p32040 Brassica napus HOM05D004230 ORTHO05D021768 2.9e-16 90.5 66 71.2
AT3G32904 Arabidopsis thaliana HOM05D004230 ORTHO05D007976 3.8e-16 90.1 78 55.1
AT1G35820 Arabidopsis thaliana HOM05D004230 ORTHO05D007976 5.0e-16 89.7 269 28.3
CARHR034450 Cardamine hirsuta HOM05D004230 ORTHO05D007976 1.5e-15 88.2 81 50.6
BcaB05g23937 Brassica carinata HOM05D004230 ORTHO05D021768 2.5e-15 87.4 89 55.1
BolC4t26773H Brassica oleracea HOM05D004230 ORTHO05D007976 2.5e-15 87.4 92 50.0
CARHR113870 Cardamine hirsuta HOM05D004230 ORTHO05D007976 4.2e-15 86.7 61 65.6
BolC4t25589H Brassica oleracea HOM05D004230 ORTHO05D007976 5.5e-15 86.3 96 43.8
BolC2t12231H Brassica oleracea HOM05D004230 ORTHO05D018474 4.7e-14 83.2 93 53.8
AL8G19300 Arabidopsis lyrata HOM05D004230 ORTHO05D000037 4.0e-13 80.1 274 29.2
BraSC39t46184Z Brassica rapa HOM05D038736 ORTHO05D028078 8.8e-13 79.0 57 75.4
C07p04500 Brassica napus HOM05D004230 ORTHO05D007976 1.2e-12 78.6 101 42.6
BolC1t04061H Brassica oleracea HOM05D004230 ORTHO05D021768 1.2e-12 78.6 52 76.9
BcaB07g32180 Brassica carinata HOM05D004230 ORTHO05D007976 1.5e-12 78.2 145 35.2
Sp5g19020 Schrenkiella parvula HOM05D004230 ORTHO05D007976 2.0e-12 77.8 93 45.2
Carub.0007s3014 Capsella rubella HOM05D004230 ORTHO05D007976 2.6e-12 77.4 46 65.2
BraA01t03328Z Brassica rapa HOM05D004230 ORTHO05D024011 5.7e-12 76.3 33 97.0
BolC7t40845H Brassica oleracea HOM05D004230 ORTHO05D007976 4.8e-11 73.2 101 40.6
C01p41050 Brassica napus HOM05D004230 ORTHO05D024011 8.2e-11 72.4 47 70.2
BolC1t04060H Brassica oleracea HOM05D004230 ORTHO05D024011 8.2e-11 72.4 47 70.2
BcaC09g49286 Brassica carinata HOM05D004230 ORTHO05D007976 1.8e-10 71.2 57 59.6
BraA06t25864Z Brassica rapa HOM05D004230 ORTHO05D018474 2.4e-10 70.9 79 46.8
AT3G42870 Arabidopsis thaliana HOM05D004230 ORTHO05D007976 4.1e-10 70.1 91 39.6
THA.LOC104819338 Tarenaya hassleriana HOM05D004230 ORTHO05D014126 5.3e-10 69.7 172 28.5
BcaB08g35653 Brassica carinata HOM05D004230 ORTHO05D007976 9.1e-10 68.9 32 90.6
AT1G43720 Arabidopsis thaliana HOM05D004230 ORTHO05D018474 1.6e-09 68.2 74 44.6
A03p63250 Brassica napus HOM05D004230 ORTHO05D007976 1.6e-09 68.2 56 55.4
AL5G20550 Arabidopsis lyrata HOM05D004230 ORTHO05D007976 2.0e-09 67.8 74 44.6
BraA06t27442Z Brassica rapa HOM05D004230 ORTHO05D007976 5.9e-09 66.2 88 43.2
BraA05t21003Z Brassica rapa HOM05D004230 ORTHO05D041249 1.3e-08 65.1 110 38.2
BraA06t25715Z Brassica rapa HOM05D004230 ORTHO05D007976 2.9e-08 63.9 43 62.8
BraA09t38540Z Brassica rapa HOM05D037366 ORTHO05D107879 5.0e-08 63.2 110 39.1
A10p29520 Brassica napus HOM05D012682 ORTHO05D014126 3.2e-07 60.5 95 32.6
A05p10280 Brassica napus HOM05D012682 ORTHO05D014126 4.2e-07 60.1 95 31.6
A06p37980 Brassica napus HOM05D012682 ORTHO05D014126 9.4e-07 58.9 105 29.5
Nn1g08111 Nelumbo nucifera HOM05D000665 ORTHO05D000285 1.6e-06 58.2 129 25.6
BcaC01g02567 Brassica carinata HOM05D004230 ORTHO05D018474 2.1e-06 57.8 56 55.4
BolC3t18593H Brassica oleracea HOM05D004230 ORTHO05D018474 2.1e-06 57.8 56 55.4
BolC9t53784H Brassica oleracea HOM05D010326 ORTHO05D012728 3.6e-06 57.0 126 25.4
Carub.0005s0823 Capsella rubella HOM05D004230 ORTHO05D007976 3.6e-06 57.0 107 33.6
Glyma.06G250600 Glycine max HOM05D000876 ORTHO05D000285 4.7e-06 56.6 66 42.4
Glyma.15G226650 Glycine max HOM05D000876 ORTHO05D000285 4.7e-06 56.6 66 42.4
Glyma.04G129400 Glycine max HOM05D000876 ORTHO05D000285 6.1e-06 56.2 66 42.4


User provided reference genes

Program Settings