Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC2t08047H Brassica oleracea HOM05D002932 ORTHO05D003208 2.6e-144 515.4 261 100.0
A02p11520 Brassica napus HOM05D002932 ORTHO05D003208 8.1e-130 467.2 242 97.5
C02p19170 Brassica napus HOM05D002932 ORTHO05D003208 5.2e-121 438.0 220 99.5
BcaC03g14485 Brassica carinata HOM05D002932 ORTHO05D003208 9.9e-120 433.7 221 98.6
BraA02t06216Z Brassica rapa HOM05D002932 ORTHO05D003208 3.0e-116 422.2 218 97.2
BcaB05g21990 Brassica carinata HOM05D002932 ORTHO05D003208 5.8e-112 407.9 226 92.0
Sp6g15070 Schrenkiella parvula HOM05D002932 ORTHO05D003208 1.9e-107 392.9 232 85.8
A03p15470 Brassica napus HOM05D002932 ORTHO05D003208 4.3e-99 365.2 235 81.7
BraA03t10842Z Brassica rapa HOM05D002932 ORTHO05D003208 4.3e-99 365.2 235 81.7
C09p42630 Brassica napus HOM05D002932 ORTHO05D003208 7.4e-99 364.4 235 82.1
BolC9t57139H Brassica oleracea HOM05D002932 ORTHO05D003208 7.4e-99 364.4 235 82.1
A10p10380 Brassica napus HOM05D002932 ORTHO05D003208 9.6e-99 364.0 235 81.7
BraA10t43121Z Brassica rapa HOM05D002932 ORTHO05D003208 9.6e-99 364.0 235 81.7
BcaC04g20524 Brassica carinata HOM05D002932 ORTHO05D003208 1.6e-98 363.2 231 82.7
C03p18060 Brassica napus HOM05D002932 ORTHO05D003208 1.8e-97 359.8 235 80.9
BolC3t14211H Brassica oleracea HOM05D002932 ORTHO05D003208 1.8e-97 359.8 235 80.9
Thhalv10014576m.g Eutrema salsugineum HOM05D002932 ORTHO05D003208 1.5e-96 356.7 232 81.5
BcaC01g06213 Brassica carinata HOM05D002932 ORTHO05D003208 3.4e-96 355.5 232 81.0
BcaB08g35654 Brassica carinata HOM05D002932 ORTHO05D003208 5.8e-96 354.8 241 78.8
AT5G52900 Arabidopsis thaliana HOM05D002932 ORTHO05D003208 7.6e-96 354.4 233 79.8
CARHR265860 Cardamine hirsuta HOM05D002932 ORTHO05D003208 2.2e-95 352.8 236 78.8
BcaB01g04222 Brassica carinata HOM05D002932 ORTHO05D003208 7.9e-93 344.4 231 78.8
AL8G27370 Arabidopsis lyrata HOM05D002932 ORTHO05D003208 6.7e-92 341.3 233 78.5
Carub.0008s1309 Capsella rubella HOM05D002932 ORTHO05D003208 3.4e-72 275.8 237 67.9
Aa31LG3G9150 Aethionema arabicum HOM05D002932 ORTHO05D003208 7.2e-54 214.9 236 58.5
THA.LOC104825123 Tarenaya hassleriana HOM05D002932 ORTHO05D003208 4.8e-50 202.2 242 53.7
THA.LOC104811937 Tarenaya hassleriana HOM05D002932 ORTHO05D003208 1.0e-47 194.5 246 54.9
Sabra12G0024300 Salix brachista HOM05D002932 ORTHO05D003208 5.0e-31 139.0 241 46.5
Phvul.007G077100 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 1.1e-30 137.9 243 44.0
Duzib084G0326 Durio zibethinus HOM05D002932 ORTHO05D003208 3.3e-30 136.3 241 43.2
Potri.015G026600 Populus trichocarpa HOM05D002932 ORTHO05D003208 4.3e-30 136.0 244 47.5
Potri.012G035200 Populus trichocarpa HOM05D002932 ORTHO05D003208 1.2e-29 134.4 241 45.6
Glyma.10G229200 Glycine max HOM05D002932 ORTHO05D003208 1.6e-29 134.0 245 42.9
MD07G1282200 Malus domestica HOM05D002932 ORTHO05D003208 1.6e-29 134.0 249 43.0
Prupe.2G304400 Prunus persica HOM05D002932 ORTHO05D003208 1.6e-29 134.0 254 42.5
QL09p012032 Quercus lobata HOM05D002932 ORTHO05D003208 1.6e-29 134.0 245 43.7
RcHm_v2.0_Chr1g0379591 Rosa chinensis HOM05D002932 ORTHO05D003208 2.1e-29 133.7 246 42.7
VMungo0720G0620 Vigna mungo HOM05D002932 ORTHO05D003208 3.6e-29 132.9 244 43.9
Duzib068G0647 Durio zibethinus HOM05D002932 ORTHO05D003208 6.2e-29 132.1 226 45.6
Duzib205G0983 Durio zibethinus HOM05D002932 ORTHO05D003208 6.2e-29 132.1 245 42.9
Thecc.03G188500 Theobroma cacao HOM05D002932 ORTHO05D003208 1.0e-28 131.3 246 42.7
FvH4_7g30650 Fragaria vesca HOM05D002932 ORTHO05D003208 1.8e-28 130.6 251 42.6
MD01G1211600 Malus domestica HOM05D002932 ORTHO05D003208 1.8e-28 130.6 250 41.2
Cpa.g.sc3.12 Carica papaya HOM05D002932 ORTHO05D003208 2.3e-28 130.2 234 44.0
FAN06G0995 Fragaria x ananassa HOM05D002932 ORTHO05D003208 2.3e-28 130.2 267 41.2
Lalb_Chr03g0035141 Lupinus albus HOM05D002932 ORTHO05D003208 2.3e-28 130.2 237 40.9
Medtr1g099440 Medicago truncatula HOM05D002932 ORTHO05D003208 2.3e-28 130.2 240 44.2
Sabra15G0019600 Salix brachista HOM05D002932 ORTHO05D003208 2.3e-28 130.2 241 44.8
Glyma.09G126400 Glycine max HOM05D002932 ORTHO05D003208 3.1e-28 129.8 228 45.6
Lj2g0001659 Lotus japonicus HOM05D002932 ORTHO05D003208 3.1e-28 129.8 232 43.1
arahy.Tifrunner.gnm1.ann1.N7QM32 Arachis hypogaea HOM05D002932 ORTHO05D003208 4.0e-28 129.4 253 39.9
Glyma.20G164000 Glycine max HOM05D002932 ORTHO05D003208 4.0e-28 129.4 244 42.6
Sabra15G0022400 Salix brachista HOM05D002932 ORTHO05D003208 4.0e-28 129.4 241 44.4
arahy.Tifrunner.gnm1.ann1.M5AIDB Arachis hypogaea HOM05D002932 ORTHO05D003208 5.2e-28 129.0 252 40.1
TPR.G7742 Trifolium pratense HOM05D002932 ORTHO05D003208 5.2e-28 129.0 242 43.8
Cfa016327 Carpinus fangiana HOM05D002932 ORTHO05D003208 8.9e-28 128.3 255 41.6
TWI23G0695 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 8.9e-28 128.3 228 42.5
FAN10G0880 Fragaria x ananassa HOM05D002932 ORTHO05D003208 1.2e-27 127.9 251 41.8
FAN10G1573 Fragaria x ananassa HOM05D002932 ORTHO05D003208 1.2e-27 127.9 251 41.8
Sed0008251 Sechium edule HOM05D002932 ORTHO05D003208 1.5e-27 127.5 239 42.7
ClCG05G008540 Citrullus lanatus HOM05D002932 ORTHO05D003208 3.4e-27 126.3 243 42.0
CANSAT21G2430 Cannabis sativa HOM05D002932 ORTHO05D003208 5.8e-27 125.6 242 39.7
Glyma.16G173400 Glycine max HOM05D002932 ORTHO05D003208 5.8e-27 125.6 225 43.1
Psat0s694g0080 Pisum sativum HOM05D002932 ORTHO05D003208 5.8e-27 125.6 250 42.0
Psat1g099240 Pisum sativum HOM05D002932 ORTHO05D003208 5.8e-27 125.6 237 41.8
Haze_00079 Corylus avellana HOM05D002932 ORTHO05D003208 9.8e-27 124.8 234 42.7
MELO3C006960.2 Cucumis melo HOM05D002932 ORTHO05D003208 1.3e-26 124.4 242 42.6
Gohir.A12G254433 Gossypium hirsutum HOM05D002932 ORTHO05D003208 1.3e-26 124.4 236 41.9
Manes.06G154700 Manihot esculenta HOM05D002932 ORTHO05D003208 1.3e-26 124.4 240 42.1
CsaV3_3G021720 Cucumis sativus L. HOM05D002932 ORTHO05D003208 1.7e-26 124.0 243 42.4
Gohir.D12G255000 Gossypium hirsutum HOM05D002932 ORTHO05D003208 2.2e-26 123.6 240 41.2
Gorai.008G272600 Gossypium raimondii HOM05D002932 ORTHO05D003208 2.2e-26 123.6 240 41.2
Phvul.004G102700 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 2.2e-26 123.6 226 44.2
Lalb_Chr01g0009541 Lupinus albus HOM05D002932 ORTHO05D003208 3.7e-26 122.9 223 40.4
VMungo0464G0277 Vigna mungo HOM05D002932 ORTHO05D003208 3.7e-26 122.9 226 42.5
FAN03G0587 Fragaria x ananassa HOM05D002932 ORTHO05D003208 4.9e-26 122.5 244 41.8
Psat1g106560 Pisum sativum HOM05D002932 ORTHO05D003208 4.9e-26 122.5 232 41.4
Sed0015119 Sechium edule HOM05D002932 ORTHO05D003208 4.9e-26 122.5 244 43.4
COL.COLO4_30256 Corchorus olitorius HOM05D002932 ORTHO05D003208 6.4e-26 122.1 241 42.3
Atru.chr1.321 Acer truncatum HOM05D002932 ORTHO05D003208 8.3e-26 121.7 251 40.6
TPR.G36623 Trifolium pratense HOM05D002932 ORTHO05D003208 8.3e-26 121.7 233 39.9
TWI14G1190 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 1.1e-25 121.3 224 43.3
GSVIVG01028788001 Vitis vinifera HOM05D003816 ORTHO05D004410 1.1e-25 121.3 238 40.8
Dinv35290 Davidia involucrata HOM05D002932 ORTHO05D003208 1.4e-25 120.9 238 39.9
Psat1g099320 Pisum sativum HOM05D002932 ORTHO05D003208 1.9e-25 120.6 220 40.9
PGR042G1004 Punica granatum HOM05D002932 ORTHO05D003208 2.4e-25 120.2 231 40.7
Manes.14G020200 Manihot esculenta HOM05D002932 ORTHO05D003208 3.2e-25 119.8 242 41.7
Dinv28362 Davidia involucrata HOM05D002932 ORTHO05D003208 2.7e-24 116.7 239 39.3
Medtr6g034060 Medicago truncatula HOM05D002932 ORTHO05D003208 2.7e-24 116.7 240 41.2
Psat1g099360 Pisum sativum HOM05D002932 ORTHO05D003208 2.7e-24 116.7 237 40.1
Actinidia03151 Actinidia chinensis HOM05D002932 ORTHO05D003208 3.5e-24 116.3 236 40.3
FAN01G1179 Fragaria x ananassa HOM05D002932 ORTHO05D003208 4.6e-24 115.9 244 41.4
FAN06G4297 Fragaria x ananassa HOM05D002932 ORTHO05D003208 4.6e-24 115.9 260 40.0
Medtr6g034055 Medicago truncatula HOM05D002932 ORTHO05D003208 6.0e-24 115.5 228 38.6
vmacro06597 Vaccinium macrocarpon HOM05D002932 ORTHO05D003208 1.7e-23 114.0 238 39.5
CiPaw.06G005800 Carya illinoinensis HOM05D002932 ORTHO05D003208 3.0e-23 113.2 230 39.1
Lj5g0016966 Lotus japonicus HOM05D002932 ORTHO05D003208 3.9e-23 112.8 232 39.2
CSS0021611 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 5.0e-23 112.5 222 37.8
SalBow4G2867 Salvia bowleyana HOM05D002932 ORTHO05D003208 5.0e-23 112.5 230 39.6
Rhsim03G0196300 Rhododendron simsii HOM05D002932 ORTHO05D003208 6.6e-23 112.1 225 39.6
Eucgr.K00306 Eucalyptus grandis HOM05D002932 ORTHO05D003208 8.6e-23 111.7 238 42.4
Lalb_Chr21g0305311 Lupinus albus HOM05D002932 ORTHO05D003208 1.9e-22 110.5 227 42.3
Hma1.2p1_0142F.1_g064300 Hydrangea macrophylla HOM05D002932 ORTHO05D003208 3.3e-22 109.8 226 41.2
Lalb_Chr02g0141341 Lupinus albus HOM05D002932 ORTHO05D003208 3.3e-22 109.8 227 41.0
TPR.G36701 Trifolium pratense HOM05D002932 ORTHO05D003208 4.3e-22 109.4 239 37.2
Rhsim09G0202600 Rhododendron simsii HOM05D002932 ORTHO05D003208 5.6e-22 109.0 236 36.4
Actinidia08604 Actinidia chinensis HOM05D002932 ORTHO05D003208 9.5e-22 108.2 238 37.0
Migut.F00261 Erythranthe guttata HOM05D002932 ORTHO05D003208 9.5e-22 108.2 255 37.3
Eucgr.A02685 Eucalyptus grandis HOM05D002932 ORTHO05D003208 1.6e-21 107.5 243 39.9
Ah.07g206300 Amaranthus hybridus HOM05D002932 ORTHO05D003208 2.8e-21 106.7 221 36.7
Oeu037130.1 Olea europaea HOM05D002932 ORTHO05D003208 2.8e-21 106.7 227 39.2
Ciclev10005884m.g Citrus clementina HOM05D002932 ORTHO05D003208 3.6e-21 106.3 212 42.9
Oeu009283.1 Olea europaea HOM05D002932 ORTHO05D003208 3.6e-21 106.3 240 39.2
Sed0018025 Sechium edule HOM05D002932 ORTHO05D003208 8.1e-21 105.1 224 38.4
ClCG01G000790 Citrullus lanatus HOM05D002932 ORTHO05D003208 8.9e-20 101.7 232 37.1
Gohir.A11G013400 Gossypium hirsutum HOM05D002932 ORTHO05D003208 1.2e-19 101.3 229 34.5
PGSC0003DMG400019964 Solanum tuberosum HOM05D002932 ORTHO05D003208 3.4e-19 99.8 245 34.3
Ah.13g069610 Amaranthus hybridus HOM05D002932 ORTHO05D003208 9.8e-19 98.2 229 37.6
CsaV3_5G000930 Cucumis sativus L. HOM05D002932 ORTHO05D003208 9.8e-19 98.2 240 36.7
Gohir.D11G013600 Gossypium hirsutum HOM05D002932 ORTHO05D003208 9.8e-19 98.2 231 33.8
Sopen03g003700 Solanum pennellii HOM05D002932 ORTHO05D003208 1.7e-18 97.4 252 33.3
Solyc03g007775.2 Solanum lycopersicum HOM05D002932 ORTHO05D003208 2.2e-18 97.1 241 32.4
CAN.G926.8 Capsicum annuum HOM05D002932 ORTHO05D003208 2.9e-18 96.7 255 33.7
TAR629G3108 Trochodendron aralioides HOM05D002932 ORTHO05D003208 2.9e-18 96.7 231 33.8
Nn1g01736 Nelumbo nucifera HOM05D002932 ORTHO05D003208 3.7e-18 96.3 224 38.8
MELO3C005851.2 Cucumis melo HOM05D002932 ORTHO05D003208 6.4e-18 95.5 230 34.3
Nn7g37319 Nelumbo nucifera HOM05D002932 ORTHO05D003208 2.4e-17 93.6 228 38.6
AUR62021078 Chenopodium quinoa HOM05D002932 ORTHO05D003208 3.2e-17 93.2 223 36.8
AUR62031454 Chenopodium quinoa HOM05D002932 ORTHO05D003208 7.1e-17 92.0 221 36.2
HanXRQChr14g0462641 Helianthus annuus HOM05D002932 ORTHO05D003208 9.2e-17 91.7 215 34.9
EL10Ac3g05377 Beta vulgaris HOM05D002932 ORTHO05D003208 2.1e-16 90.5 221 36.7
Medtr6g034050 Medicago truncatula HOM05D002932 ORTHO05D003208 3.5e-16 89.7 220 36.8
TAR374G1073 Trochodendron aralioides HOM05D002932 ORTHO05D003208 1.7e-15 87.4 227 36.1
TAR636G0499 Trochodendron aralioides HOM05D002932 ORTHO05D003208 2.3e-15 87.0 222 33.8
ECA238G1001 Erigeron canadensis HOM05D002932 ORTHO05D003208 6.6e-15 85.5 231 35.5
HanXRQChr13g0392281 Helianthus annuus HOM05D002932 ORTHO05D003208 1.5e-14 84.3 230 36.1
PGR142G0585 Punica granatum HOM05D002932 ORTHO05D003208 1.5e-14 84.3 225 37.8
Atru.ctg97_1.61 Acer truncatum HOM05D002932 ORTHO05D003208 3.3e-14 83.2 214 36.9
Sc19g0001040 Simmondsia chinensis HOM05D002932 ORTHO05D003208 1.6e-13 80.9 223 35.0
Peaxi162Scf00904g00468 Petunia axillaris HOM05D002932 ORTHO05D003208 2.8e-13 80.1 203 35.0
Peaxi162Scf00618g00627 Petunia axillaris HOM05D002932 ORTHO05D003208 8.1e-13 78.6 204 35.8
CSS0045579 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 1.4e-12 77.8 176 36.9
Actinidia31853 Actinidia chinensis HOM05D002932 ORTHO05D003208 3.1e-12 76.6 154 39.0
Lsat_1_v5_gn_2_133581 Lactuca sativa HOM05D002932 ORTHO05D003208 3.1e-12 76.6 189 35.4
CAN.G204.10 Capsicum annuum HOM05D002932 ORTHO05D003208 4.0e-12 76.3 220 31.8
Gorai.007G013900 Gossypium raimondii HOM05D002932 ORTHO05D003208 4.0e-12 76.3 192 34.4
HanXRQChr07g0207101 Helianthus annuus HOM05D002932 ORTHO05D003208 5.2e-12 75.9 215 31.6
Nitab4.5_0009102g0020 Nicotiana tabacum HOM05D002932 ORTHO05D003208 2.0e-11 73.9 205 33.7
CSS0001843 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 1.3e-10 71.2 105 45.7
Atru.chr5.594 Acer truncatum HOM05D002932 ORTHO05D003208 1.4e-09 67.8 221 31.7
Lsat_1_v5_gn_8_6240 Lactuca sativa HOM05D002932 ORTHO05D003208 4.6e-08 62.8 241 29.5
Manes.01G251500 Manihot esculenta HOM05D002932 ORTHO05D003208 6.0e-08 62.4 226 28.8
vmacro10092 Vaccinium macrocarpon HOM05D002932 ORTHO05D003208 7.8e-08 62.0 88 44.3
Lsat_1_v5_gn_4_34860 Lactuca sativa HOM05D002932 ORTHO05D003208 1.3e-07 61.2 238 28.2
TPR.G37115 Trifolium pratense HOM05D002932 ORTHO05D003208 1.3e-07 61.2 228 29.8
CiPaw.02G036300 Carya illinoinensis HOM05D002932 ORTHO05D003208 1.7e-07 60.8 265 27.2
Ciclev10023540m.g Citrus clementina HOM05D002932 ORTHO05D003208 1.7e-07 60.8 225 32.0
Sabra14G0066400 Salix brachista HOM05D002932 ORTHO05D003208 1.7e-07 60.8 229 29.7
MSTRG.27064 Avicennia marina HOM05D002932 ORTHO05D003208 2.3e-07 60.5 150 35.3
Potri.014G091500 Populus trichocarpa HOM05D002932 ORTHO05D003208 2.3e-07 60.5 234 29.5
PGR031G1724 Punica granatum HOM05D002932 ORTHO05D003208 2.3e-07 60.5 222 32.9
Glyma.18G121000 Glycine max HOM05D002932 ORTHO05D003208 3.0e-07 60.1 228 25.4
VMungo0251G1401 Vigna mungo HOM05D002932 ORTHO05D003208 3.9e-07 59.7 230 29.1
Sopen10g005630 Solanum pennellii HOM05D002932 ORTHO05D003208 5.1e-07 59.3 223 29.6
Dinv43873 Davidia involucrata HOM05D002932 ORTHO05D003208 8.6e-07 58.5 242 27.7
PGSC0003DMG402000198 Solanum tuberosum HOM05D002932 ORTHO05D003208 8.6e-07 58.5 294 28.9
Lalb_Chr04g0256131 Lupinus albus HOM05D002932 ORTHO05D003208 1.1e-06 58.2 229 27.1
PSO135G1046 Papaver somniferum HOM05D002932 ORTHO05D003208 1.1e-06 58.2 134 29.9
PGSC0003DMG400019420 Solanum tuberosum HOM05D002932 ORTHO05D003208 1.9e-06 57.4 231 28.6
Aqoxy1G02826 Aquilegia oxysepala HOM05D002932 ORTHO05D003208 5.6e-06 55.8 230 27.4
PSO384G0628 Papaver somniferum HOM05D002932 ORTHO05D003208 9.6e-06 55.1 134 30.6


User provided reference genes

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