Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC2t08045H Brassica oleracea HOM05D005720 ORTHO05D006984 0.0e+00 1782.7 946 100.0
C02p19150 Brassica napus HOM05D005720 ORTHO05D006984 0.0e+00 1769.6 946 99.4
BcaC03g14481 Brassica carinata HOM05D005720 ORTHO05D006984 0.0e+00 1659.8 946 94.3
A02p11480 Brassica napus HOM05D005720 ORTHO05D006984 0.0e+00 1652.5 947 93.7
BraA02t06213Z Brassica rapa HOM05D005720 ORTHO05D006984 0.0e+00 1644.8 947 93.5
Sp6g15110 Schrenkiella parvula HOM05D005720 ORTHO05D006984 0.0e+00 1505.7 951 85.0
C09p42670 Brassica napus HOM05D005720 ORTHO05D006984 0.0e+00 1480.7 949 84.6
BolC9t57143H Brassica oleracea HOM05D005720 ORTHO05D006984 0.0e+00 1480.7 949 84.6
Thhalv10012590m.g Eutrema salsugineum HOM05D005720 ORTHO05D006984 0.0e+00 1463.4 952 81.0
AL8G27450 Arabidopsis lyrata HOM05D005720 ORTHO05D006984 0.0e+00 1389.8 957 76.9
CARHR265920 Cardamine hirsuta HOM05D005720 ORTHO05D006984 0.0e+00 1379.0 950 76.8
AT5G52950 Arabidopsis thaliana HOM05D005720 ORTHO05D006984 0.0e+00 1364.0 956 76.5
Carub.0008s1313 Capsella rubella HOM05D005720 ORTHO05D006984 0.0e+00 1336.2 958 74.9
Aa31LG3G9180 Aethionema arabicum HOM05D005720 ORTHO05D006984 0.0e+00 1189.9 954 67.4
THA.LOC104825125 Tarenaya hassleriana HOM05D005720 ORTHO05D006984 9.3e-277 957.2 976 56.8
BcaB08g35658 Brassica carinata HOM05D005720 ORTHO05D006984 7.9e-260 901.0 564 82.3
BcaB05g21993 Brassica carinata HOM05D005720 ORTHO05D006984 1.0e-254 884.0 946 57.2
Gohir.A09G183200 Gossypium hirsutum HOM05D005720 ORTHO05D006984 2.1e-183 647.1 1011 42.8
Thecc.03G190400 Theobroma cacao HOM05D005720 ORTHO05D006984 3.5e-183 646.4 1017 41.9
Gohir.D09G177900 Gossypium hirsutum HOM05D005720 ORTHO05D006984 1.9e-181 640.6 1008 42.4
QL09p011597 Quercus lobata HOM05D005720 ORTHO05D006984 4.3e-181 639.4 1025 42.1
COL.COLO4_24780 Corchorus olitorius HOM05D005720 ORTHO05D006984 7.6e-178 628.6 1069 39.8
Cfa016346 Carpinus fangiana HOM05D005720 ORTHO05D006984 9.9e-178 628.2 1020 41.9
Duzib084G1243 Durio zibethinus HOM05D005720 ORTHO05D006984 1.3e-174 617.8 1020 41.1
Manes.06G155900 Manihot esculenta HOM05D005720 ORTHO05D006984 1.9e-173 614.0 1009 41.1
Gorai.006G200000 Gossypium raimondii HOM05D005720 ORTHO05D006984 3.3e-173 613.2 1008 41.6
MD01G1213400 Malus domestica HOM05D005720 ORTHO05D006984 5.6e-173 612.5 1011 41.1
MD07G1283200 Malus domestica HOM05D005720 ORTHO05D006984 8.1e-172 608.6 1029 40.6
Potri.012G033800 Populus trichocarpa HOM05D005720 ORTHO05D006984 3.1e-171 606.7 1009 41.4
CiPaw.06G006200 Carya illinoinensis HOM05D005720 ORTHO05D006984 1.5e-170 604.4 1014 40.5
Prupe.2G305400 Prunus persica HOM05D005720 ORTHO05D006984 1.3e-169 601.3 1020 39.5
GSVIVG01028746001 Vitis vinifera HOM05D005720 ORTHO05D006984 1.1e-168 598.2 983 41.0
TWI39G1277 Tripterygium wilfordii HOM05D005720 ORTHO05D006984 2.7e-167 593.6 1022 40.0
Sabra12G0022900 Salix brachista HOM05D005720 ORTHO05D006984 2.3e-166 590.5 1008 40.4
Cpa.g.sc3.32 Carica papaya HOM05D005720 ORTHO05D006984 1.0e-158 565.1 1001 39.2
Dinv28352 Davidia involucrata HOM05D005720 ORTHO05D006984 7.4e-157 558.9 1035 38.6
Nn1g01775 Nelumbo nucifera HOM05D005720 ORTHO05D006984 1.6e-156 557.8 1034 39.0
FvH4_7g30790 Fragaria vesca HOM05D005720 ORTHO05D006984 6.3e-148 529.3 1014 37.6
FAN03G0014 Fragaria x ananassa HOM05D005720 ORTHO05D006984 2.6e-146 523.9 1018 38.0
FAN06G1427 Fragaria x ananassa HOM05D005720 ORTHO05D006984 4.5e-146 523.1 1021 37.1
FAN01G1865 Fragaria x ananassa HOM05D005720 ORTHO05D006984 7.7e-146 522.3 1014 37.0
Haze_00092 Corylus avellana HOM05D005720 ORTHO05D006984 5.0e-145 519.6 1025 38.0
FAN06G3446 Fragaria x ananassa HOM05D005720 ORTHO05D006984 6.5e-145 519.2 1018 37.1
CsaV3_4G002370 Cucumis sativus L. HOM05D005720 ORTHO05D006984 8.5e-145 518.8 1043 38.0
arahy.Tifrunner.gnm1.ann1.35A5BC Arachis hypogaea HOM05D005720 ORTHO05D006984 8.8e-142 508.8 1066 35.7
arahy.Tifrunner.gnm1.ann1.YA4Y9S Arachis hypogaea HOM05D005720 ORTHO05D006984 2.4e-139 500.7 1066 35.5
Cc02_g02050 Coffea canephora HOM05D005720 ORTHO05D006984 9.1e-139 498.8 987 37.6
AUR62031469 Chenopodium quinoa HOM05D005720 ORTHO05D006984 5.9e-138 496.1 1012 37.3
Hma1.2p1_0142F.1_g064130 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 5.0e-137 493.0 1022 36.9
RcHm_v2.0_Chr1g0379731 Rosa chinensis HOM05D005720 ORTHO05D006984 5.0e-137 493.0 896 38.4
Hund11695 Selenicereus undatus HOM05D005720 ORTHO05D006984 3.2e-136 490.3 998 37.1
EL10Ac3g05366 Beta vulgaris HOM05D005720 ORTHO05D006984 4.2e-136 490.0 1021 36.6
MELO3C017804.2 Cucumis melo HOM05D005720 ORTHO05D006984 4.2e-136 490.0 976 37.2
Rhsim03G0197100 Rhododendron simsii HOM05D005720 ORTHO05D006984 4.2e-136 490.0 1014 36.6
Oeu037117.2 Olea europaea HOM05D005720 ORTHO05D006984 9.4e-136 488.8 1014 37.4
Actinidia08611 Actinidia chinensis HOM05D005720 ORTHO05D006984 1.8e-134 484.6 860 39.1
Eucgr.K00315 Eucalyptus grandis HOM05D005720 ORTHO05D006984 1.3e-132 478.4 1029 36.7
Ca_27881_v3 Cicer arietinum L. HOM05D005720 ORTHO05D006984 2.2e-132 477.6 1003 36.0
BraA10t43127Z Brassica rapa HOM05D005720 ORTHO05D006984 3.1e-131 473.8 314 82.8
MBI06_g04292_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 1.9e-128 464.5 1026 34.9
FAN10G0387 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.2e-127 461.8 1009 35.8
FAN10G2558 Fragaria x ananassa HOM05D005720 ORTHO05D006984 2.1e-127 461.1 820 38.0
TPR.G16464 Trifolium pratense HOM05D005720 ORTHO05D006984 6.7e-126 456.1 1006 36.1
Lalb_Chr06g0161451 Lupinus albus HOM05D005720 ORTHO05D006984 7.5e-125 452.6 1010 35.6
Medtr8g058270 Medicago truncatula HOM05D005720 ORTHO05D006984 7.5e-125 452.6 970 36.6
Aqoxy7G00210 Aquilegia oxysepala HOM05D005720 ORTHO05D006984 2.8e-124 450.7 1022 35.8
MD01G1213200 Malus domestica HOM05D005720 ORTHO05D006984 1.1e-123 448.7 881 36.7
Glyma.16G069100 Glycine max HOM05D005720 ORTHO05D006984 2.4e-123 447.6 1025 36.0
TAR629G0723 Trochodendron aralioides HOM05D005720 ORTHO05D006984 2.0e-122 444.5 782 39.9
Sc13g0009450 Simmondsia chinensis HOM05D005720 ORTHO05D006984 1.3e-121 441.8 1022 35.3
PSO384G4812 Papaver somniferum HOM05D005720 ORTHO05D006984 3.8e-121 440.3 1014 34.3
Lsat_1_v5_gn_1_45000 Lactuca sativa HOM05D005720 ORTHO05D006984 8.5e-121 439.1 981 34.9
PSO135G0324 Papaver somniferum HOM05D005720 ORTHO05D006984 9.4e-120 435.6 1015 34.3
Solyc03g007550.4 Solanum lycopersicum HOM05D005720 ORTHO05D006984 1.0e-118 432.2 994 34.9
Sopen03g003510 Solanum pennellii HOM05D005720 ORTHO05D006984 6.8e-118 429.5 994 34.8
TAR636G3648 Trochodendron aralioides HOM05D005720 ORTHO05D006984 8.8e-118 429.1 794 37.4
MSTRG.27056 Avicennia marina HOM05D005720 ORTHO05D006984 1.2e-117 428.7 1023 34.5
HanXRQChr01g0031161 Helianthus annuus HOM05D005720 ORTHO05D006984 1.2e-117 428.7 1004 34.6
DCAR_010640 Daucus carota HOM05D005720 ORTHO05D006984 9.8e-117 425.6 983 34.0
HanXRQChr11g0353671 Helianthus annuus HOM05D005720 ORTHO05D006984 8.3e-116 422.5 998 34.9
Ah.07g206170 Amaranthus hybridus HOM05D005720 ORTHO05D006984 1.1e-115 422.2 1025 33.5
Nitab4.5_0000472g0110 Nicotiana tabacum HOM05D005720 ORTHO05D006984 4.5e-114 416.8 1010 34.3
AUR62021063 Chenopodium quinoa HOM05D005720 ORTHO05D006984 1.0e-113 415.6 1008 33.9
ClCG07G011830 Citrullus lanatus HOM05D005720 ORTHO05D006984 1.0e-113 415.6 1021 34.2
Lj3g0007394 Lotus japonicus HOM05D005720 ORTHO05D006984 1.1e-112 412.1 1002 33.3
SalBow4G2908 Salvia bowleyana HOM05D005720 ORTHO05D006984 1.6e-111 408.3 994 33.6
ECA248G2416 Erigeron canadensis HOM05D005720 ORTHO05D006984 4.7e-111 406.8 980 34.0
Peaxi162Scf00904g00464 Petunia axillaris HOM05D005720 ORTHO05D006984 1.4e-110 405.2 1018 33.6
Migut.F00255 Erythranthe guttata HOM05D005720 ORTHO05D006984 6.8e-110 402.9 994 34.9
SalBow4G2744 Salvia bowleyana HOM05D005720 ORTHO05D006984 4.4e-109 400.2 1000 33.6
VMungo1127G0215 Vigna mungo HOM05D005720 ORTHO05D006984 4.9e-108 396.7 991 34.3
Psat4g140280 Pisum sativum HOM05D005720 ORTHO05D006984 1.8e-107 394.8 870 35.9
CAN.G108.10 Capsicum annuum HOM05D005720 ORTHO05D006984 5.9e-106 389.8 1004 33.2
SHI10811 Sapria himalayana HOM05D005720 ORTHO05D006984 4.0e-102 377.1 890 33.5
HPP92_005221 Vanilla planifolia HOM05D005720 ORTHO05D006984 5.9e-98 363.2 944 32.7
SGA_v2.0_scaffold192G40596 Striga asiatica HOM05D005720 ORTHO05D006984 1.7e-89 335.1 939 31.5
ATR1131G019 Amborella trichopoda HOM05D005720 ORTHO05D006984 9.5e-88 329.3 1001 31.1
unitig_747.g21855 Utricularia gibba HOM05D000121 ORTHO05D000102 2.8e-87 327.8 1038 30.3
CDE02G2607 Ceratophyllum demersum HOM05D005720 ORTHO05D006984 3.2e-83 314.3 850 30.9
vmacro06588 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 6.0e-82 310.1 630 35.4
Hma1.2p1_0142F.1_g064120 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 3.9e-81 307.4 479 41.5
PGR142G3228 Punica granatum HOM05D005720 ORTHO05D006984 4.3e-80 303.9 1004 29.7
Phvul.011G167400 Phaseolus vulgaris HOM05D005720 ORTHO05D006984 1.1e-78 299.3 674 35.2
Zm00001eb119640 Zea mays HOM05D005720 ORTHO05D006984 2.7e-74 284.6 996 28.1
Nitab4.5_0001331g0120 Nicotiana tabacum HOM05D005720 ORTHO05D006984 3.5e-74 284.3 1005 29.5
Hma1.2p1_1891F.1_g306670 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 1.3e-73 282.3 922 29.6
Lj3P914T60 Lonicera japonica HOM05D005720 ORTHO05D006984 7.1e-59 233.4 319 44.2
SEGI_30168 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 4.6e-58 230.7 1088 26.5
HPP92_005214 Vanilla planifolia HOM05D005720 ORTHO05D006984 1.3e-55 222.6 927 26.6
BcaB08g35657 Brassica carinata HOM05D005720 ORTHO05D006984 2.4e-54 218.4 165 81.2
CSS0019438 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 1.2e-53 216.1 476 36.1
Lj3A914T79 Lonicera japonica HOM05D005720 ORTHO05D006984 4.5e-53 214.2 608 31.7
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 2.1e-50 205.3 466 36.5
CSS0038820 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 3.9e-49 201.1 477 34.2
Sed0011275 Sechium edule HOM05D005720 ORTHO05D006984 6.7e-49 200.3 454 36.1
Hma1.2p1_0142F.1_g064140 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 4.1e-38 164.5 406 35.2
MBI16_g03131_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 7.6e-37 160.2 308 36.4
TAR629G3278 Trochodendron aralioides HOM05D005720 ORTHO05D006984 7.4e-32 143.7 250 41.2
Os01g0222300 Oryza sativa ssp. japonica HOM05D005720 ORTHO05D006984 2.1e-26 125.6 366 32.5
PGSC0003DMG400006595 Solanum tuberosum HOM05D005720 ORTHO05D006984 4.4e-24 117.9 254 36.6
SEGI_32546 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 4.1e-22 111.3 788 23.6
vmacro06589 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 5.9e-21 107.5 296 33.4
RcHm_v2.0_Chr1g0379741 Rosa chinensis HOM05D005720 ORTHO05D006984 4.7e-10 71.2 88 54.5
MBI16_g03132_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 6.7e-09 67.4 169 34.9
Mapoly0039s0001 Marchantia polymorpha HOM05D005720 ORTHO05D006984 5.7e-08 64.3 223 27.4
Pp3c15_13500 Physcomitrium patens HOM05D005720 ORTHO05D006984 1.3e-07 63.2 127 33.9
Lju188P3T29 Lonicera japonica HOM05D005720 ORTHO05D006984 4.8e-07 61.2 88 46.6
SHI10812 Sapria himalayana HOM05D005720 ORTHO05D006984 4.8e-07 61.2 181 33.1
AagrBONN_evm.TU.Sc2ySwM_117.1094 Anthoceros agrestis HOM05D005720 ORTHO05D006984 1.8e-06 59.3 257 25.3
Lsat_1_v5_gn_5_90621 Lactuca sativa HOM05D005720 ORTHO05D006984 9.1e-06 57.0 192 28.6


User provided reference genes

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