Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC2t07897H Brassica oleracea HOM05D006017 ORTHO05D007821 5.5e-283 976.9 459 100.0
BcaC03g14354 Brassica carinata HOM05D006017 ORTHO05D007821 1.2e-282 975.7 459 99.8
C02p17670 Brassica napus HOM05D006017 ORTHO05D007821 4.4e-280 967.2 459 99.1
BcaB05g22107 Brassica carinata HOM05D006017 ORTHO05D007821 1.1e-275 952.6 459 96.5
A02p10590 Brassica napus HOM05D006017 ORTHO05D007821 9.4e-275 949.5 452 97.8
BraA02t06124Z Brassica rapa HOM05D006017 ORTHO05D007821 9.4e-275 949.5 452 97.8
Sp6g16110 Schrenkiella parvula HOM05D006017 ORTHO05D007821 1.2e-269 932.6 459 94.1
Aa31LG3G9950 Aethionema arabicum HOM05D006017 ORTHO05D007821 1.3e-263 912.5 453 92.5
Carub.0008s1436 Capsella rubella HOM05D006017 ORTHO05D007821 1.7e-263 912.1 455 92.7
AL8G29200 Arabidopsis lyrata HOM05D006017 ORTHO05D007821 2.8e-263 911.4 457 92.3
CARHR267270 Cardamine hirsuta HOM05D006017 ORTHO05D007821 1.2e-261 906.0 457 92.3
AT5G54080 Arabidopsis thaliana HOM05D006017 ORTHO05D007821 2.7e-261 904.8 457 91.7
THA.LOC104811882 Tarenaya hassleriana HOM05D006017 ORTHO05D007821 1.3e-247 859.4 457 86.0
Cpa.g.sc131.80 Carica papaya HOM05D006017 ORTHO05D007821 6.6e-236 820.5 433 85.5
Hma1.2p1_0416F.1_g148570 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 5.2e-233 810.8 452 82.3
Sopen12g005880 Solanum pennellii HOM05D006017 ORTHO05D007821 2.6e-232 808.5 448 80.6
PGSC0003DMG400015330 Solanum tuberosum HOM05D006017 ORTHO05D007821 1.3e-231 806.2 448 80.6
Solyc12g014100.2 Solanum lycopersicum HOM05D006017 ORTHO05D007821 2.9e-231 805.1 448 80.1
TWI38G0439 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 8.4e-231 803.5 451 82.0
Thecc.07G102400 Theobroma cacao HOM05D006017 ORTHO05D007821 1.2e-229 799.7 432 84.3
Rhsim04G0023700 Rhododendron simsii HOM05D006017 ORTHO05D007821 1.6e-229 799.3 438 82.9
Atru.chr2.2344 Acer truncatum HOM05D006017 ORTHO05D007821 2.1e-229 798.9 450 80.4
MSTRG.14945 Avicennia marina HOM05D006017 ORTHO05D007821 2.7e-229 798.5 433 82.9
Dinv14956 Davidia involucrata HOM05D006017 ORTHO05D007821 3.5e-229 798.1 448 81.2
Thhalv10013691m.g Eutrema salsugineum HOM05D006017 ORTHO05D007821 6.0e-229 797.3 459 83.4
ClCG07G009900 Citrullus lanatus HOM05D006017 ORTHO05D007821 7.8e-229 797.0 450 80.9
Gorai.002G065000 Gossypium raimondii HOM05D006017 ORTHO05D007821 7.8e-229 797.0 448 80.8
Peaxi162Scf00000g00262 Petunia axillaris HOM05D006017 ORTHO05D007821 3.0e-228 795.0 439 82.0
Gohir.A01G059400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 3.9e-228 794.7 448 80.8
Gohir.D01G045400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 1.1e-227 793.1 448 80.4
Manes.03G103900 Manihot esculenta HOM05D006017 ORTHO05D007821 2.5e-227 792.0 432 82.9
vmacro09508 Vaccinium macrocarpon HOM05D006017 ORTHO05D007821 3.3e-227 791.6 465 77.8
Actinidia18784 Actinidia chinensis HOM05D006017 ORTHO05D007821 5.6e-227 790.8 450 80.2
CsaV3_4G008430 Cucumis sativus L. HOM05D006017 ORTHO05D007821 5.6e-227 790.8 452 79.9
FAN16G2700 Fragaria x ananassa HOM05D006017 ORTHO05D007821 7.3e-227 790.4 436 81.7
CSS0036883 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 9.6e-227 790.0 452 79.9
Cfa019614 Carpinus fangiana HOM05D006017 ORTHO05D007821 1.2e-226 789.6 452 79.9
FAN11G3087 Fragaria x ananassa HOM05D006017 ORTHO05D007821 2.8e-226 788.5 432 82.4
Lsat_1_v5_gn_9_98620 Lactuca sativa HOM05D006017 ORTHO05D007821 3.6e-226 788.1 449 79.5
RcHm_v2.0_Chr5g0031821 Rosa chinensis HOM05D006017 ORTHO05D007821 4.7e-226 787.7 433 81.3
Sc03g0010290 Simmondsia chinensis HOM05D006017 ORTHO05D007821 4.7e-226 787.7 439 81.3
Prupe.4G172100 Prunus persica HOM05D006017 ORTHO05D007821 8.1e-226 786.9 451 78.5
CiPaw.12G115700 Carya illinoinensis HOM05D006017 ORTHO05D007821 1.8e-225 785.8 441 80.0
MELO3C016089.2 Cucumis melo HOM05D006017 ORTHO05D007821 2.4e-225 785.4 450 79.8
Cc05_g11510 Coffea canephora HOM05D006017 ORTHO05D007821 3.1e-225 785.0 448 79.7
MBI07_g06432_MAGBIO Magnolia biondii HOM05D006017 ORTHO05D007821 3.1e-225 785.0 433 81.5
Haze_09368 Corylus avellana HOM05D006017 ORTHO05D007821 6.8e-225 783.9 470 77.9
PSO541G6385 Papaver somniferum HOM05D006017 ORTHO05D007821 6.8e-225 783.9 448 79.5
Sed0020976 Sechium edule HOM05D006017 ORTHO05D007821 6.8e-225 783.9 450 79.6
CANSAT35G1773 Cannabis sativa HOM05D006017 ORTHO05D007821 8.9e-225 783.5 433 82.4
Migut.M00760 Erythranthe guttata HOM05D006017 ORTHO05D007821 8.9e-225 783.5 448 79.7
Eucgr.F01184 Eucalyptus grandis HOM05D006017 ORTHO05D007821 8.9e-225 783.5 437 81.5
DCAR_028453 Daucus carota HOM05D006017 ORTHO05D007821 1.2e-224 783.1 444 80.0
GSVIVG01014248001 Vitis vinifera HOM05D006017 ORTHO05D007821 2.6e-224 781.9 434 81.8
ECA240G4517 Erigeron canadensis HOM05D006017 ORTHO05D007821 4.4e-224 781.2 447 79.4
HanXRQChr03g0070991 Helianthus annuus HOM05D006017 ORTHO05D007821 4.4e-224 781.2 451 79.4
Eucgr.F01185 Eucalyptus grandis HOM05D006017 ORTHO05D007821 5.8e-224 780.8 437 81.2
PGR083G0123 Punica granatum HOM05D006017 ORTHO05D007821 5.8e-224 780.8 433 82.4
Lj8A152T86 Lonicera japonica HOM05D006017 ORTHO05D007821 9.9e-224 780.0 451 79.6
EL10Ac4g08290 Beta vulgaris HOM05D006017 ORTHO05D007821 2.2e-223 778.9 434 81.1
CAN.G739.4 Capsicum annuum HOM05D006017 ORTHO05D007821 2.4e-222 775.4 471 75.6
Lj3g0015312 Lotus japonicus HOM05D006017 ORTHO05D007821 4.2e-222 774.6 432 81.2
QL08p027671 Quercus lobata HOM05D006017 ORTHO05D007821 7.1e-222 773.9 437 80.1
Aqoxy1G02214 Aquilegia oxysepala HOM05D006017 ORTHO05D007821 9.3e-222 773.5 452 77.2
CiPaw.11G165400 Carya illinoinensis HOM05D006017 ORTHO05D007821 1.6e-221 772.7 431 80.5
PSO675G4947 Papaver somniferum HOM05D006017 ORTHO05D007821 1.0e-220 770.0 440 79.3
AUR62019513 Chenopodium quinoa HOM05D006017 ORTHO05D007821 1.7e-220 769.2 438 79.7
Medtr8g463280 Medicago truncatula HOM05D006017 ORTHO05D007821 1.7e-220 769.2 432 80.1
ATR0749G089 Amborella trichopoda HOM05D006017 ORTHO05D007821 1.5e-219 766.1 434 79.3
arahy.Tifrunner.gnm1.ann1.DSNA77 Arachis hypogaea HOM05D006017 ORTHO05D007821 2.5e-219 765.4 435 78.9
Psat4g138640 Pisum sativum HOM05D006017 ORTHO05D007821 3.3e-219 765.0 432 80.8
Ca_23058_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 5.6e-219 764.2 448 78.3
Ca_30664_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 5.6e-219 764.2 448 78.3
FAN21G1753 Fragaria x ananassa HOM05D006017 ORTHO05D007821 7.3e-219 763.8 465 75.7
Phvul.011G148800 Phaseolus vulgaris HOM05D006017 ORTHO05D007821 1.3e-218 763.1 432 79.6
Glyma.12G158600 Glycine max HOM05D006017 ORTHO05D007821 2.1e-218 762.3 429 81.1
Lalb_Chr03g0030841 Lupinus albus HOM05D006017 ORTHO05D007821 2.1e-218 762.3 441 78.2
arahy.Tifrunner.gnm1.ann1.FV2XB3 Arachis hypogaea HOM05D006017 ORTHO05D007821 6.2e-218 760.8 435 78.6
VMungo1127G0952 Vigna mungo HOM05D006017 ORTHO05D007821 1.4e-217 759.6 432 79.6
Potri.001G374100 Populus trichocarpa HOM05D006017 ORTHO05D007821 1.8e-217 759.2 436 80.0
Oeu061327.1 Olea europaea HOM05D006017 ORTHO05D007821 1.5e-216 756.1 469 73.8
Oeu061328.1 Olea europaea HOM05D006017 ORTHO05D007821 1.5e-216 756.1 469 73.8
Sabra16G0246500 Salix brachista HOM05D006017 ORTHO05D007821 5.4e-214 747.7 440 78.2
Nitab4.5_0003077g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 9.3e-214 746.9 468 74.4
Os06g0103300 Oryza sativa ssp. japonica HOM05D006017 ORTHO05D007821 2.1e-213 745.7 447 78.1
AUR62036125 Chenopodium quinoa HOM05D006017 ORTHO05D007821 1.3e-212 743.0 441 77.3
HPP92_003902 Vanilla planifolia HOM05D006017 ORTHO05D007821 3.6e-210 734.9 438 74.7
unitig_46.g18314 Utricularia gibba HOM05D006017 ORTHO05D007821 1.4e-209 733.0 439 76.1
Zm00001eb379510 Zea mays HOM05D006017 ORTHO05D007821 9.9e-208 726.9 446 76.2
Ciclev10008509m.g Citrus clementina HOM05D006017 ORTHO05D007821 1.6e-205 719.5 384 85.2
SGA_v2.0_scaffold73G24213 Striga asiatica HOM05D006017 ORTHO05D007821 2.7e-205 718.8 492 70.3
Ah.04g164440 Amaranthus hybridus HOM05D006017 ORTHO05D007821 1.6e-202 709.5 447 74.0
Nn1g04303 Nelumbo nucifera HOM05D006017 ORTHO05D007821 1.2e-200 703.4 378 83.9
CDE02G3882 Ceratophyllum demersum HOM05D006017 ORTHO05D007821 1.0e-199 700.3 449 71.9
Mapoly0078s0002 Marchantia polymorpha HOM05D006017 ORTHO05D007821 1.1e-193 680.2 438 70.5
Hund22764 Selenicereus undatus HOM05D006017 ORTHO05D007821 3.1e-193 678.7 397 78.1
AagrBONN_evm.TU.Sc2ySwM_228.2578 Anthoceros agrestis HOM05D006017 ORTHO05D007821 1.3e-188 663.3 424 69.6
Pp3c16_940 Physcomitrium patens HOM05D006017 ORTHO05D007821 2.2e-186 656.0 438 68.3
Duzib170G0488 Durio zibethinus HOM05D006017 ORTHO05D007821 3.6e-181 638.6 452 68.6
Nitab4.5_0005445g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 5.2e-172 608.2 415 69.2
SMO119G0176 Selaginella moellendorffii HOM05D006017 ORTHO05D007821 2.6e-171 605.9 433 64.4
FvH4_3g19020 Fragaria vesca HOM05D006017 ORTHO05D007821 1.6e-160 570.1 320 79.7
Hma1.2p1_0416F.1_g148580 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 5.0e-159 565.1 311 82.3
Cre02.g091200 Chlamydomonas reinhardtii HOM05D006017 ORTHO05D007821 8.5e-159 564.3 443 61.6
SalBow8G4076 Salvia bowleyana HOM05D006017 ORTHO05D007821 6.3e-154 548.1 304 81.2
PRCOL_00000185 Prasinoderma coloniale HOM05D006017 ORTHO05D007821 1.7e-151 540.0 457 59.1
TPR.G22540 Trifolium pratense HOM05D006017 ORTHO05D007821 1.9e-150 536.6 376 68.6
MD03G1237500 Malus domestica HOM05D006017 ORTHO05D007821 3.1e-145 519.2 296 79.7
Glyma.06G234200 Glycine max HOM05D006017 ORTHO05D007821 2.5e-126 456.4 276 75.7
BcaC04g20394 Brassica carinata HOM05D006017 ORTHO05D007821 3.7e-93 346.3 434 50.5
C09p44170 Brassica napus HOM05D006017 ORTHO05D017343 3.3e-78 296.6 302 56.6
CSS0003418 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 2.8e-77 293.5 196 71.9
MD03G1237300 Malus domestica HOM05D006017 ORTHO05D007821 3.0e-71 273.5 159 78.0
FAN25G2436 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.8e-68 264.2 132 88.6
SEGI_01915 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 3.4e-67 260.0 205 60.0
Oeu061326.1 Olea europaea HOM05D006017 ORTHO05D007821 7.4e-62 242.3 133 82.7
Rhsim07G0153900 Rhododendron simsii HOM05D006017 ORTHO05D000252 8.2e-61 238.8 237 53.2
Glyma.06G234050 Glycine max HOM05D006017 ORTHO05D007821 4.5e-59 233.0 133 78.9
TAR436G0001 Trochodendron aralioides HOM05D006017 ORTHO05D007821 7.7e-59 232.3 132 78.8
Nitab4.5_0004022g0010 Nicotiana tabacum HOM05D006017 ORTHO05D007821 1.2e-56 224.9 120 85.8
A10p11370 Brassica napus HOM05D006017 ORTHO05D007821 4.2e-49 199.9 249 49.4
CSS0021316 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 2.2e-45 187.6 114 69.3
TWI38G1497 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 6.3e-45 186.0 119 72.3
BolC9t57289H Brassica oleracea HOM05D006017 ORTHO05D104628 3.5e-35 153.7 182 50.5
SEGI_25954 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 9.8e-30 135.6 100 64.0
FAN25G2983 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.0e-23 115.5 90 58.9
arahy.Tifrunner.gnm1.ann1.EZ2Q4B Arachis hypogaea HOM05D006004 ORTHO05D006976 6.4e-21 106.3 61 75.4
SEGI_23248 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 6.4e-21 106.3 84 59.5
TWI38G0821 Tripterygium wilfordii HOM05D006017 ORTHO05D413584 4.6e-19 100.1 55 76.4
CSS0031230 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 5.0e-18 96.7 103 47.6
BraA10t43231Z Brassica rapa HOM05D006017 ORTHO05D017343 1.6e-16 91.7 68 63.2
HPP92_003866 Vanilla planifolia HOM05D006017 ORTHO05D007821 3.3e-09 67.4 54 61.1
Mapoly0432s0001 Marchantia polymorpha HOM05D019566 ORTHO05D017343 3.6e-08 63.9 43 65.1


User provided reference genes

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